Python CGenerator, consexpression Examples

Example #1

File: Test.py Project: jamesdanylik/gemini

def runBase(g_length,r_length):
	CGenerator.randomGenome('auto',g_length)
	CGenerator.makeHaplotypes('auto')
	CGenerator.makeReads('auto',r_length)
	baseline = HAssembler.readsToHaps('auto')
	return baseline

Example #2

File: Test.py Project: jamesdanylik/gemini

def runOpt(g_length,r_length):
	CGenerator.randomGenome('auto',g_length)
	CGenerator.makeHaplotypes('auto')
	CGenerator.makeReads('auto',r_length)
	optomized = HAssembler.rTH('auto',10)
	return optomized