Example #1
0
File: run.py Project: nscherf/linus
            tgmmPath,
            resampleTo=resampleTo,
            minTrackLength=skipSmallerThan,
        )
        if addState2 is not None:
            loaderState2 = dc.TgmmLoader(
                addState2,
                resampleTo=resampleTo,
                minTrackLength=skipSmallerThan,
            )

    if biotracksPath is not None:
        print("Load from Biotracks...")
        loader = dc.BiotracksLoader(
            biotracksPath,
            resampleTo=resampleTo,
            minTrackLength=skipSmallerThan,
        )
        if addState2 is not None:
            loaderState2 = dc.BiotracksLoader(
                addState2,
                resampleTo=resampleTo,
                minTrackLength=skipSmallerThan,
            )

    if svfPath is not None:
        print("Load from SVF...")
        loader = dc.SvfLoader(svfPath,
                              resampleTo=resampleTo,
                              minTrackLength=skipSmallerThan,
                              csvSeparator=csvSep)