bwin_eod = fish._eod[inx:max_inx]
fish_type = fish.type_detector()
print 'Fish No. ' + fish_file_number + ' is ' + fish_type + ' type!'
s[current_fish].append(odml.Property("Fish_type", fish_type))
fig = plt.figure(num='Fish # ' + fish_file_number, figsize=(11, 7))
ax1 = fig.add_subplot(2, 2, 1)
ax2 = fig.add_subplot(2, 2, 2)
ax3 = fig.add_subplot(2, 1, 2)
lowp_filter = 4 # This number multiplied by the fundamental frequency of the fish
# sets the low pass filter (not valid for pulse fishes!).
fish.plot_eodform(ax=ax1, filtr=lowp_filter)
fish.plot_spectogram(ax=ax2)
fish.plot_wavenvelope(ax=ax3, win_edges=window_edges)
plt.savefig(new_dir + '/' + new_mod_filename[:-7] + '.pdf')
s[current_fish].append(odml.Property("Figure_file", new_mod_filename[:-7] + '.pdf'))
doc = odml.Document()
doc.append(s)
# doc.author("Juan Sehuanes")
writer = odml.tools.xmlparser.XMLWriter(doc)
writer.write_file(new_dir + '/' + 'odml_file_from_' + str(sys.argv[-1]) + '.xml')
print '\n Your analyze is done! Thank you for using thunderFish!'
except:
print """
