Example #1
0
    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None

        self.layout = QtGui.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)
        self.vb = ViewBox()
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(52)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left',
                             linkView=self.vb,
                             maxTickLength=-10,
                             showValues=False)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
Example #2
0
 def __init__(self, image=None, fillHistogram=True):
     """
     If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
     By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
     """
     GraphicsWidget.__init__(self)
     self.lut = None
     self.imageItem = None
     
     self.layout = QtGui.QGraphicsGridLayout()
     self.setLayout(self.layout)
     self.layout.setContentsMargins(1,1,1,1)
     self.layout.setSpacing(0)
     self.vb = ViewBox()
     self.vb.setMaximumWidth(152)
     self.vb.setMinimumWidth(52)
     self.vb.setMouseEnabled(x=False, y=True)
     self.gradient = GradientEditorItem()
     self.gradient.setOrientation('right')
     self.gradient.loadPreset('grey')
     self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
     self.region.setZValue(1000)
     self.vb.addItem(self.region)
     self.axis = AxisItem('left', linkView=self.vb, maxTickLength=-10, showValues=False)
     self.layout.addItem(self.axis, 0, 0)
     self.layout.addItem(self.vb, 0, 1)
     self.layout.addItem(self.gradient, 0, 2)
     self.range = None
     self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
     self.vb.setFlag(self.gradient.ItemStacksBehindParent)
     
     #self.grid = GridItem()
     #self.vb.addItem(self.grid)
     
     self.gradient.sigGradientChanged.connect(self.gradientChanged)
     self.region.sigRegionChanged.connect(self.regionChanging)
     self.region.sigRegionChangeFinished.connect(self.regionChanged)
     self.vb.sigRangeChanged.connect(self.viewRangeChanged)
     self.plot = PlotDataItem()
     self.plot.rotate(90)
     self.fillHistogram(fillHistogram)
         
     self.vb.addItem(self.plot)
     self.autoHistogramRange()
     
     if image is not None:
         self.setImageItem(image)
Example #3
0
class HistogramLUTItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.
    Includes:
       - Image histogram 
       - Movable region over histogram to select black/white levels
       - Gradient editor to define color lookup table for single-channel images
    """

    sigLookupTableChanged = QtCore.Signal(object)
    sigLevelsChanged = QtCore.Signal(object)
    sigLevelChangeFinished = QtCore.Signal(object)

    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None

        self.layout = QtGui.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)
        self.vb = ViewBox()
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(52)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left',
                             linkView=self.vb,
                             maxTickLength=-10,
                             showValues=False)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
        #self.setSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Expanding)

    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setFillBrush(color)
        else:
            self.plot.setFillLevel(None)

    #def sizeHint(self, *args):
    #return QtCore.QSizeF(115, 200)

    def paint(self, p, *args):
        pen = self.region.lines[0].pen
        rgn = self.getLevels()
        p1 = self.vb.mapFromViewToItem(
            self, Point(self.vb.viewRect().center().x(), rgn[0]))
        p2 = self.vb.mapFromViewToItem(
            self, Point(self.vb.viewRect().center().x(), rgn[1]))
        gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
        for pen in [fn.mkPen('k', width=3), pen]:
            p.setPen(pen)
            p.drawLine(p1, gradRect.bottomLeft())
            p.drawLine(p2, gradRect.topLeft())
            p.drawLine(gradRect.topLeft(), gradRect.topRight())
            p.drawLine(gradRect.bottomLeft(), gradRect.bottomRight())
        #p.drawRect(self.boundingRect())

    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.YAxis, False)
        self.vb.setYRange(mn, mx, padding)

        #d = mx-mn
        #mn -= d*padding
        #mx += d*padding
        #self.range = [mn,mx]
        #self.updateRange()
        #self.vb.setMouseEnabled(False, True)
        #self.region.setBounds([mn,mx])

    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XYAxes)
        #self.range = None
        #self.updateRange()
        #self.vb.setMouseEnabled(False, False)

    #def updateRange(self):
    #self.vb.autoRange()
    #if self.range is not None:
    #self.vb.setYRange(*self.range)
    #vr = self.vb.viewRect()

    #self.region.setBounds([vr.top(), vr.bottom()])

    def setImageItem(self, img):
        self.imageItem = img
        img.sigImageChanged.connect(self.imageChanged)
        img.setLookupTable(
            self.getLookupTable)  ## send function pointer, not the result
        #self.gradientChanged()
        self.regionChanged()
        self.imageChanged(autoLevel=True)
        #self.vb.autoRange()

    def viewRangeChanged(self):
        self.update()

    def gradientChanged(self):
        if self.imageItem is not None:
            if self.gradient.isLookupTrivial():
                self.imageItem.setLookupTable(
                    None)  #lambda x: x.astype(np.uint8))
            else:
                self.imageItem.setLookupTable(
                    self.getLookupTable
                )  ## send function pointer, not the result

        self.lut = None
        #if self.imageItem is not None:
        #self.imageItem.setLookupTable(self.gradient.getLookupTable(512))
        self.sigLookupTableChanged.emit(self)

    def getLookupTable(self, img=None, n=None, alpha=None):
        if n is None:
            if img.dtype == np.uint8:
                n = 256
            else:
                n = 512
        if self.lut is None:
            self.lut = self.gradient.getLookupTable(n, alpha=alpha)
        return self.lut

    def regionChanged(self):
        #if self.imageItem is not None:
        #self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelChangeFinished.emit(self)
        #self.update()

    def regionChanging(self):
        if self.imageItem is not None:
            self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoLevel=False, autoRange=False):
        prof = debug.Profiler('HistogramLUTItem.imageChanged', disabled=True)
        h = self.imageItem.getHistogram()
        prof.mark('get histogram')
        if h[0] is None:
            return
        self.plot.setData(*h)
        prof.mark('set plot')
        if autoLevel:
            mn = h[0][0]
            mx = h[0][-1]
            self.region.setRegion([mn, mx])
            prof.mark('set region')
        prof.finish()

    def getLevels(self):
        return self.region.getRegion()

    def setLevels(self, mn, mx):
        self.region.setRegion([mn, mx])
Example #4
0
class HistogramLUTItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.
    Includes:
       - Image histogram 
       - Movable region over histogram to select black/white levels
       - Gradient editor to define color lookup table for single-channel images
    """
    
    sigLookupTableChanged = QtCore.Signal(object)
    sigLevelsChanged = QtCore.Signal(object)
    sigLevelChangeFinished = QtCore.Signal(object)
    
    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None
        
        self.layout = QtGui.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1,1,1,1)
        self.layout.setSpacing(0)
        self.vb = ViewBox()
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(52)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left', linkView=self.vb, maxTickLength=-10, showValues=False)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        
        #self.grid = GridItem()
        #self.vb.addItem(self.grid)
        
        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)
            
        self.vb.addItem(self.plot)
        self.autoHistogramRange()
        
        if image is not None:
            self.setImageItem(image)
        #self.setSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Expanding)
        
    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setFillBrush(color)
        else:
            self.plot.setFillLevel(None)
        
    #def sizeHint(self, *args):
        #return QtCore.QSizeF(115, 200)
        
    def paint(self, p, *args):
        pen = self.region.lines[0].pen
        rgn = self.getLevels()
        p1 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[0]))
        p2 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[1]))
        gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
        for pen in [fn.mkPen('k', width=3), pen]:
            p.setPen(pen)
            p.drawLine(p1, gradRect.bottomLeft())
            p.drawLine(p2, gradRect.topLeft())
            p.drawLine(gradRect.topLeft(), gradRect.topRight())
            p.drawLine(gradRect.bottomLeft(), gradRect.bottomRight())
        #p.drawRect(self.boundingRect())
        
        
    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.YAxis, False)
        self.vb.setYRange(mn, mx, padding)
        
        #d = mx-mn
        #mn -= d*padding
        #mx += d*padding
        #self.range = [mn,mx]
        #self.updateRange()
        #self.vb.setMouseEnabled(False, True)
        #self.region.setBounds([mn,mx])
        
    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XYAxes)
        #self.range = None
        #self.updateRange()
        #self.vb.setMouseEnabled(False, False)
            
    #def updateRange(self):
        #self.vb.autoRange()
        #if self.range is not None:
            #self.vb.setYRange(*self.range)
        #vr = self.vb.viewRect()
        
        #self.region.setBounds([vr.top(), vr.bottom()])

    def setImageItem(self, img):
        self.imageItem = img
        img.sigImageChanged.connect(self.imageChanged)
        img.setLookupTable(self.getLookupTable)  ## send function pointer, not the result
        #self.gradientChanged()
        self.regionChanged()
        self.imageChanged(autoLevel=True)
        #self.vb.autoRange()
        
    def viewRangeChanged(self):
        self.update()
    
    def gradientChanged(self):
        if self.imageItem is not None:
            if self.gradient.isLookupTrivial():
                self.imageItem.setLookupTable(None) #lambda x: x.astype(np.uint8))
            else:
                self.imageItem.setLookupTable(self.getLookupTable)  ## send function pointer, not the result
            
        self.lut = None
        #if self.imageItem is not None:
            #self.imageItem.setLookupTable(self.gradient.getLookupTable(512))
        self.sigLookupTableChanged.emit(self)

    def getLookupTable(self, img=None, n=None, alpha=None):
        if n is None:
            if img.dtype == np.uint8:
                n = 256
            else:
                n = 512
        if self.lut is None:
            self.lut = self.gradient.getLookupTable(n, alpha=alpha)
        return self.lut

    def regionChanged(self):
        #if self.imageItem is not None:
            #self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelChangeFinished.emit(self)
        #self.update()

    def regionChanging(self):
        if self.imageItem is not None:
            self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoLevel=False, autoRange=False):
        prof = debug.Profiler('HistogramLUTItem.imageChanged', disabled=True)
        h = self.imageItem.getHistogram()
        prof.mark('get histogram')
        if h[0] is None:
            return
        self.plot.setData(*h)
        prof.mark('set plot')
        if autoLevel:
            mn = h[0][0]
            mx = h[0][-1]
            self.region.setRegion([mn, mx])
            prof.mark('set region')
        prof.finish()
            
    def getLevels(self):
        return self.region.getRegion()
        
    def setLevels(self, mn, mx):
        self.region.setRegion([mn, mx])