Example #1
0
 def test_find_frame(self):
     '''As in the name. Frame is 1 based'''
     read = 'GTCGTCGTCCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTT'
     assert LS.find_frame(read) == 1, read
     read = 'AGTCGTCGTCCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTT'
     assert LS.find_frame(read) == 2, read
     read = 'TCGTCGTCCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTT'
     assert LS.find_frame(read) == 3, read