def run():
    """
    Analyze data from the MICE experiment
    This reads in and processes data taken from the MICE
    experiment.
    """
    # Set up data cards.
    data_cards_list = []
    # batch mode = runs ROOT in batch mode so that canvases are not displayed
    # 1 = True, Batch Mode
    # 0 = False, Interactive Mode
    # setting it to false/0 will cause canvases to pop up on screen and
    # will get refreshed every N spills set by the refresh_rate data
    # card.
    data_cards_list.append("root_batch_mode=%d\n" % 1)
    # refresh_rate = once in how many spills should canvases be updated
    data_cards_list.append("refresh_rate=%d\n" % 5)
    # Add auto-numbering to the image tags. If False then each
    # histogram output for successive spills will have the same tag
    # so there are no spill-specific histograms. This is the
    # recommended use for online reconstruction.
    data_cards_list.append("histogram_auto_number=%s\n" % False)
    # Default image type is eps. For online use, use PNG.
    data_cards_list.append("histogram_image_type=\"png\"\n")
    # Directory for images. Default: $MAUS_WEB_MEDIA_RAW if set
    # else the current directory is used.
    # Uncomment and change the following if you want to hard
    # code a different default path.
    #data_cards_list.append("image_directory='%s'\n" % os.getcwd())

    # Convert data_cards to string.
    data_cards = io.StringIO(unicode("".join(data_cards_list)))

    # Set up the input that reads from DAQ
    #    my_input = MAUS.InputCppDAQData()
    my_input = MAUS.InputCppDAQOfflineData()
    #    my_input = MAUS.InputCppDAQOnlineData() # pylint: disable = E1101

    # Create an empty array of mappers, then populate it
    # with the functionality you want to use.
    my_map = MAUS.MapPyGroup()
    my_map.append(MAUS.MapCppReconSetup())
    my_map.append(MAUS.MapCppEMRPlaneHits())
    my_map.append(MAUS.MapCppEMRSpacePoints())
    my_map.append(MAUS.MapCppEMRRecon())

    # Histogram reducer.
    #reducer = MAUS.ReducePyDoNothing()
    reducer = MAUS.ReduceCppEMRPlot()

    # Save images as eps and meta-data as JSON.
    #output_worker = MAUS.OutputPyDoNothing()
    output_worker = MAUS.OutputPyRootImage()

    # Run the workflow.
    MAUS.Go(my_input, my_map, reducer, output_worker, data_cards)
def run():
    """
    Analyze data from the MICE experiment
    """

    # Set up the input that reads from DAQ
    my_input = MAUS.InputCppDAQOfflineData()

    # Create an empty array of mappers, then populate it
    # with the functionality you want to use.
    my_map = MAUS.MapPyGroup()

    # Trigger
    my_map.append(MAUS.MapCppReconSetup())

    # Detectors
    my_map.append(MAUS.MapCppTOFDigits())
    my_map.append(MAUS.MapCppTOFSlabHits())
    my_map.append(MAUS.MapCppTOFSpacePoints())

    my_map.append(MAUS.MapCppCkovDigits())

    my_map.append(MAUS.MapCppKLDigits())
    my_map.append(MAUS.MapCppKLCellHits())

    my_map.append(MAUS.MapCppTrackerDigits()) # SciFi real data digitization
    my_map.append(MAUS.MapCppTrackerClusterRecon()) # SciFi channel clustering
    my_map.append(MAUS.MapCppTrackerSpacePointRecon()) # SciFi spacepoint recon
    my_map.append(MAUS.MapCppTrackerPatternRecognition()) # SciFi track finding
    my_map.append(MAUS.MapCppTrackerPRSeed()) # Set the Seed from PR
    my_map.append(MAUS.MapCppTrackerTrackFit()) # SciFi track fit

    my_map.append(MAUS.MapCppEMRPlaneHits())
    my_map.append(MAUS.MapCppEMRSpacePoints())
    my_map.append(MAUS.MapCppEMRRecon())

    my_reduce = MAUS.ReducePyDoNothing()

    #  The Go() drives all the components you pass in then put all the output
    #  into a file called 'mausput'
    MAUS.Go(my_input, my_map, my_reduce, MAUS.OutputCppRoot())
def run():
    """
    Analyze data from the MICE experiment
    """

    # Set up the input that reads from DAQ
    my_input = MAUS.InputCppDAQOnlineData()

    # Create an empty array of mappers, then populate it
    # with the functionality you want to use.
    my_map = MAUS.MapPyGroup()

    # Trigger
    my_map.append(MAUS.MapCppReconSetup())

    # Detectors
    my_map.append(MAUS.MapCppTOFDigits())
    my_map.append(MAUS.MapCppTOFSlabHits())
    my_map.append(MAUS.MapCppTOFSpacePoints())

    my_map.append(MAUS.MapCppCkovDigits())

    my_map.append(MAUS.MapCppKLDigits())
    my_map.append(MAUS.MapCppKLCellHits())

    my_map.append(MAUS.MapCppTrackerDigits())
    my_map.append(MAUS.MapCppTrackerRecon())

    my_map.append(MAUS.MapCppEMRPlaneHits())
    my_map.append(MAUS.MapCppEMRRecon())

    my_reduce = MAUS.ReducePyDoNothing()

    #  The Go() drives all the components you pass in then put all the output
    #  into a file called 'mausput'
    MAUS.Go(my_input, my_map, my_reduce, MAUS.OutputCppRoot())
 def setUpClass(cls): # pylint: disable = C0103
     """Sets a mapper and configuration"""
     cls.mapper = MAUS.MapCppEMRPlaneHits()
     cls.c = Configuration()