def RegionScanTest(x_size, y_size):
rs = MicroscopeModules.RegionScan()
try:
print "Running RegionScanTest"
rs.SetRelativeRoi(x_size, y_size)
rs.Start(action, "C:", "", "")
except Exception, e:
print e
print "hello"
print "Could not run regionscan", e
# Name: Region Multicube
# Description: Aquire regions with all cubes, uses UI cube options for exposure and Z offset
# Author: Fluorescence Acq
# Category: Regions
import microscope, MicroscopeModules, os, time
# Specify the whether the region scan saves images, SAVE_DISPLAY, or just displays them, DISPLAY_ONLY
action = MicroscopeModules.RegionScan.SAVE_DISPLAY
aborted = False
rs = MicroscopeModules.RegionScan()
cube_data = {}
# OnStart is called once when the user presses start to begin the timelapse.
def OnStart():
print "Start: Region Multicube"
global output, cube_data
data_dir = microscope.GetUserDataDirectory()
output = microscope.ShowSimpleFileSequenceSaveDialog(
data_dir
) # This is really geared to regions and does not have the %. options
if output != None:
print "Saving to directory ", output[0]
print "Filename Format ", output[1]
else:
print "Aborting Timelapse"
microscope.AbortTimeLapseVisitPoints()
# Move Perform spc and Save
import MicroscopeModules, microscope, time
output = ()
spc = MicroscopeModules.Spc()
# OnStart is called once when the user presses start to begin the timelapse.
def OnStart():
global output
print "Stage Position, ", microscope.GetStagePosition()
print microscope.GetTimeLapsePoints()
data_dir = microscope.GetUserDataDirectory()
output = microscope.ShowFileSequenceSaveDialog(data_dir)
print "Saving to directory ", output[0]
print "Filename Format ", output[1]
def OnAbort():
print "OnAbort()"
# Called once at the start of each cycle of points. Should contain at least one call to microscope.MicroscopeVisitPoints() to start the cycle.
def OnCycleStart():
print "Back to start."
microscope.VisitPoints()
# Called each time the stage moves to a new point.