# continue
# elif ephys_folder.find('m480') == 104:
# if 'm480.dat' not in os.listdir(ephys_folder):
# op.pack_2(ephys_folder,filename =ephys_folder +'/'+'m480'+'.dat', channels =channels_m486_m482_m480_m478, chprefix = 'CH', dref = 'ave')
# elif ephys_folder.find('m478') == 104:
# if 'm478.dat' not in os.listdir(ephys_folder):
# op.pack_2(ephys_folder, filename =ephys_folder +'/'+'m478'+'.dat', channels =channels_m486_m482_m480_m478, chprefix = 'CH', dref = 'ave')
# elif ephys_folder.find('m486') == 104:
# if 'm486.dat' not in os.listdir(ephys_folder):
# op.pack_2(ephys_folder, filename =ephys_folder +'/'+'m486'+'.dat', channels =channels_m486_m482_m480_m478, chprefix ='CH', dref = 'ave')
# elif ephys_folder.find('m482') == 104:
# if 'm482.dat' not in os.listdir(ephys_folder):
# op.pack_2(ephys_folder, filename =ephys_folder +'/'+'m482'+'.dat', channels =channels_m486_m482_m480_m478, chprefix ='CH', dref = 'ave')
# elif ephys_folder.find('m484') == 109:
# if 'm484.dat' not in os.listdir(ephys_folder):
# op.pack_2(ephys_folder, filename =ephys_folder +'/'+'m484'+'.dat', channels =channels_m484_m479, chprefix ='CH', dref = 'ave')
# elif ephys_folder.find('m479') == 109:
# if 'm479.dat' not in os.listdir(ephys_folder):
# op.pack_2(ephys_folder, filename =ephys_folder +'/'+'m479'+'.dat', channels =channels_m484_m479, chprefix ='CH', dref = 'ave')
#
for file in files:
ephys_folder = os.path.join(files_folder, file)
if ephys_folder.find('m480') == 104:
if 'm480.dat' not in os.listdir(ephys_folder):
op.pack_2(ephys_folder,
filename=ephys_folder + '/' + 'm480' + '.dat',
channels=channels_m486_m482_m480_m478_second_box,
chprefix='CH',
dref='ave')
# create shank1 and shank2 folders
os.makedirs(folderpath + '/shank1')
os.makedirs(folderpath + '/shank2')
# use channels ordered by intan headstage!!!
# shnk1chan = [6, 8, 7, 9, 12, 14, 1, 2, 10, 16, 4, 13, 5, 15, 3, 11]
# shnk1chan = [19, 18, 25, 24, 20, 17, 23, 31, 27, 32, 26, 30]
shnk1chan = [
22, 21, 28, 29, 19, 18, 25, 24, 20, 17, 23, 31, 27, 32, 26, 30
] # all channels
shnk2chan = [12, 5, 4, 14, 15, 13, 16, 2, 6, 1, 3] # all channels
# use the folder name to name individual dat files
datname1 = dfold + '_shank1.dat'
OpenEphys.pack_2(folderpath,
filename='shank1/' + datname1,
source='103',
channels=shnk1chan,
dref=None)
datname2 = dfold + '_shank2.dat'
OpenEphys.pack_2(folderpath,
filename='shank2/' + datname2,
source='103',
channels=shnk2chan,
dref=None)
#==============================================================================#
#=============================== GENERATE NEW PRM FILES =======================#
# Copy template prm file, edit relevant lines, produce specific prm file for each shank
# for shank1
