def test_fromNumbers(self):
fastqString = "~~~KKBB!!"
values = [93, 93, 93, 42, 42, 33, 33, 0, 0]
qvs = PacBioBam.QualityValues()
for value in values:
qvs.append(PacBioBam.QualityValue(value))
self.assertEqual(fastqString, qvs.Fastq())
def test_fromNumber(self):
zero = PacBioBam.QualityValue(0)
thirtythree = PacBioBam.QualityValue(33)
normal = PacBioBam.QualityValue(42)
maxQV = PacBioBam.QualityValue(93)
tooHigh = PacBioBam.QualityValue(94)
max8bit = PacBioBam.QualityValue(126)
self.assertEqual(0, int(zero))
self.assertEqual(33, int(thirtythree))
self.assertEqual(42, int(normal))
self.assertEqual(93, int(maxQV))
self.assertEqual(93, int(tooHigh))
self.assertEqual(93, int(max8bit))
self.assertEqual('!', zero.Fastq())
self.assertEqual('B', thirtythree.Fastq())
self.assertEqual('K', normal.Fastq())
self.assertEqual('~', maxQV.Fastq())
self.assertEqual('~', tooHigh.Fastq())
self.assertEqual('~', max8bit.Fastq())
def test_defaults(self):
value = PacBioBam.QualityValue()
self.assertEqual(0, int(value))
self.assertEqual('!', value.Fastq())