def test_hash_ids_edges(monkeypatch, pb_resources, hf, pb_odd_resources):
class MockRandom(object):
def __init__(self):
self.values = [
"YCva8wcKxN", "r5iHz5XItJ", "b0dfUBWelI", "Tv0XxZziIQ",
"hkwU50UQfq", "Jbn4JWgxXy", "OeGgev9Mdu", "pQRpDbjomQ",
"z9JvFAa1vZ", "vHwNvExi6A", "i6tluyP88x", "mXvIO8GYAg",
"clDGuGrku8", "atmvoy1uN6", "0R59tE6LgP", "eOUHJPbVaf",
"2U0FarU2Lv", "4tITUmacIV", "UND58iKTiH", "aqQWMJnjeu",
"rOFRXh4ftJ", "HeAcnkJ8LV", "bdWtyB4OP4", "L0aFqF3oMc",
"4HN9dP8uqL", "TtdeGIxxY6", "s4S1RfO9sO", "mIScdjmMzq",
"ohGB7fpJGq", "CtLTzCg6RB", "QufRP2p8jN", "NA98oE9g9u",
"6IbtWWrdDr", "ZqnxsFXwpT", "hZd46Bc15s", "iL936ARfV9",
"iOcjJIWv7Y", "yVkDeDhFpK", "d2amahGHzt", "H9VzjZZdbW",
"kxFL0xMfFx", "glhRhmReup", "kxFL0xMfFx"
]
self.current_value = self.values.pop()
def choice(self, *args):
if not self.current_value:
self.current_value = self.values.pop()
next_char = self.current_value[0]
self.current_value = self.current_value[1:]
return next_char
with pytest.raises(TypeError) as e:
Pb.hash_ids(Pb.PhyloBuddy, hash_length="foo")
assert "Hash length argument must be an integer, not <class 'str'>" in str(
e)
with pytest.raises(ValueError) as e:
Pb.hash_ids(Pb.PhyloBuddy, hash_length=0)
assert "Hash length must be greater than 0" in str(e)
with pytest.raises(ValueError) as e:
Pb.hash_ids(pb_resources.get_one("m n"), hash_length=1)
assert "Insufficient number of hashes available to cover all sequences." in str(
e)
tester = Pb.PhyloBuddy(pb_odd_resources['node_lables'])
test_hash = hf.buddy2hash(tester)
tester = Pb.hash_ids(tester, hash_length=5, nodes=True)
assert hf.buddy2hash(tester) != test_hash
monkeypatch.setattr(Pb.random, "Random", MockRandom)
tester = Pb.hash_ids(pb_resources.get_one("o n"))
assert hf.buddy2hash(tester) == "48b1b2b0e1f7012ea1a964269300ac6b"
def test_hash_ids_edges():
with pytest.raises(TypeError) as e:
Pb.hash_ids(Pb.PhyloBuddy, hash_length="foo")
assert "Hash length argument must be an integer, not <class 'str'>" in str(e)
with pytest.raises(ValueError) as e:
Pb.hash_ids(Pb.PhyloBuddy, hash_length=0)
assert "Hash length must be greater than 0" in str(e)
with pytest.raises(ValueError) as e:
Pb.hash_ids(pb_resources.get_one("m n"), hash_length=1)
assert "Insufficient number of hashes available to cover all sequences." in str(e)
tester = Pb.PhyloBuddy(resource("tree_with_node_lables.nwk"))
test_hash = phylo_to_hash(tester)
tester = Pb.hash_ids(tester, hash_length=5, nodes=True)
assert phylo_to_hash(tester) != test_hash
def test_hash_ids(phylobuddy):
orig_hash = phylo_to_hash(phylobuddy)
Pb.hash_ids(phylobuddy)
assert phylo_to_hash(phylobuddy) != orig_hash
def test_hash_ids(pb_resources, hf):
for phylobuddy in pb_resources.get_list("m o k n l"):
orig_hash = hf.buddy2hash(phylobuddy)
Pb.hash_ids(phylobuddy)
assert hf.buddy2hash(phylobuddy) != orig_hash
