Python PipelineGeneset.buildGeneRegions Examples

Example #1

File: pipeline_polyphen.py Project: yangjl/cgat

def buildGeneRegions(infile, outfile):
    '''annotate genomic regions with reference gene set.

    Only considers protein coding genes. In case of overlapping
    genes, only take the longest (in genomic coordinates).
    Genes not on UCSC contigs are removed.
    '''
    PGeneset.buildGeneRegions(infile, outfile)

Example #2

File: pipeline_polyphen.py Project: jmadzo/cgat

def buildGeneRegions(infile, outfile):
    '''annotate genomic regions with reference gene set.

    Only considers protein coding genes. In case of overlapping
    genes, only take the longest (in genomic coordinates).
    Genes not on UCSC contigs are removed.
    '''
    PGeneset.buildGeneRegions(infile, outfile)