def do_insert(config="default.conf", logging=False):
if config:
if isinstance(config, P.Configure):
pass
elif isinstance(config, str):
config = P.Configure.open(config)
elif isinstance(config, dict):
config = P.Configure().copy(config)
else:
raise Exception("Invalid configuration object " + str(config))
P.connect(conf=config, do_logging=logging)
try:
w = P.Worm()
net = P.Network()
w.neuron_network(net)
w.save()
upload_neurons()
upload_muscles()
upload_lineage_and_descriptions()
upload_synapses()
upload_receptors_and_innexins()
upload_types()
serialize_as_n3()
#infer()
except:
traceback.print_exc()
finally:
P.disconnect()
def do_insert(config="default.conf", logging=False):
global SQLITE_EVIDENCE
global WORM
global NETWORK
if config:
if isinstance(config, P.Configure):
pass
elif isinstance(config, str):
config = P.Configure.open(config)
elif isinstance(config, dict):
config = P.Configure().copy(config)
else:
raise Exception("Invalid configuration object " + str(config))
P.connect(conf=config, do_logging=logging)
SQLITE_EVIDENCE = P.Evidence(key="C_elegans_SQLite_DB",
title="C. elegans sqlite database")
try:
WORM = P.Worm()
NETWORK = P.Network()
WORM.neuron_network(NETWORK)
NETWORK.worm(WORM)
upload_neurons()
upload_muscles()
upload_lineage_and_descriptions()
upload_connections()
upload_receptors_types_neurotransmitters_neuropeptides_innexins()
upload_additional_receptors_neurotransmitters_neuropeptides_innexins()
print("Saving...")
WORM.save()
#infer()
print("Serializing...")
serialize_as_n3()
except Exception:
traceback.print_exc()
finally:
P.disconnect()
