def main(InputFile,ContrastName,Interleave,TR,Regressor):
print 'RunFillPipelineOnFile_SC.py'
STCFiles,Methods=STC.main(InputFile,TR,Interleave)
RMC.main(InputFile)
for stcfile,meth in zip(STCFiles,Methods):
GLM.main(stcfile,meth,Regressor,ContrastName)
Files,MethOrder=STC.main(target)
print 'STC Files:\n{}'.format(Files)
print 'Method:\t{MC}\n{ln}'.format(MC=MC,ln=ln)
for InputNii,meth in zip(Files,MethOrder):
if meth=='Filt':
Regressor='/share/studies/David_FS/Real/MotionCorrection/{}/{}/{}/20_Visual.txt'.format(motion,subID,MC)
else:
Regressor='/share/studies/David_FS/Real/MotionCorrection/{}/{}/{}/Visual.txt'.format(motion,subID,MC)
GLM.main(InputNii,meth,Regressor,con)
print 'Reg:\t{Regressor}\nFile:\t{InputNii}\nMeth:\t{meth}'.format(Regressor=Regressor,InputNii=InputNii,meth=meth)
elif MC=='STMC':
print 'Method:\t{MC}\n{ln}'.format(MC=MC,ln=ln)
Files,MethOrder=STC.main(target)
print 'STC Files:\n{}'.format(Files)
for InputNii,meth in zip(Files,MethOrder):