def compute(self):
myNet, state = Implicit.generateReactions(self.model)
myNet.printReactions(self.reactions)
self.len_reactions.config(text="Reactions: " + str(myNet.getNumOfReactions()))
states, edges, orderedAgents = Gen.generateStateSpace(myNet, state, int(self.bound.get()))
self.len_states.config(text="States: " + str(len(states)))
self.len_edges.config(text="Edges: " + str(len(edges)))
Gen.printStateSpace(states, edges, orderedAgents, self.vertices, self.edges)
self.compute.config(text="Finish")
self.compute.config(command=root.destroy)
print
print "Processing..."
starttime = time()
print
################################################
print "Example 1:"
bound = 1
sys.stdout.write("Reaction network ... ")
sys.stdout.flush()
myNet, state = Implicit.generateReactions("inputs/model1.bcs")
print "DONE"
sys.stdout.write("State space ... ")
sys.stdout.flush()
states, edges, orderedAgents = Gen.generateStateSpace(myNet, state, bound)
Gen.printStateSpace(states, edges, orderedAgents, "outputs/vertices1.txt", "outputs/edges1.txt")
print "DONE"
print "---------------------------"
################################################
print "Example 2"
bound = 2
sys.stdout.write("Reaction network ... ")
sys.stdout.flush()
myNet, state = Implicit.generateReactions("inputs/model2.bcs")
print "DONE"
sys.stdout.write("State space ... ")
sys.stdout.flush()
states, edges, orderedAgents = Gen.generateStateSpace(myNet, state, bound)
import os
import sys
sys.path.append(os.path.abspath('../Core/'))
import State_space_generator as Gen
import Implicit_reaction_network_generator as Implicit
inputFile = sys.argv[-4]
bound = sys.argv[-3]
statesFile = sys.argv[-2]
edgesFile = sys.argv[-1]
myNet, state = Implicit.generateReactions(inputFile)
states, edges, orderedAgents = Gen.generateStateSpace(myNet, state, bound)
Gen.printStateSpace(states, edges, orderedAgents, statesFile, edgesFile)