except:
print "ERROR: problem parsing cluster%% filter values '%s'" % opts['-p']
usage()
exit(1)
if '-s' in opts:
pattern = opts['-s']
if DEBUG: print "Pattern : |%s|" % pattern
if '-f' in opts:
files = [ opts['-f'] ]
elif '-d' in opts:
if '-R' in opts:
recursive = True
files = pathToList( path = opts['-d'], recursive = recursive, pattern = pattern )
if not files:
print "WARNING: no VS results in the dir:", opts['-d']
exit(1)
elif '-F' in opts:
try:
files = getLines(opts['-F'], doStrip = True)
print "%d files from list file %s" % (len(files), opts['-F'])
except:
print "ERROR opening the input list: " , opts['-F']
exit(1)
else:
print "ERROR: Either file (-f), directory (-d) or list file (-F) input options must be specified"
usage()
exit(1)
pattern = opts['-p']
#print "PATTERN", pattern
if DEBUG: print "File pattern:", pattern
if '-f' in opts:
input_files = opts['-f'].split(",")
if DEBUG: print "[ file mode:", input_files, "]"
elif '-d' in opts:
dir_root = opts['-d']
if DEBUG: print "[ directory mode: %s ]" % dir_root
if recursive:
print "- scanning sub-directories of [ %s ]..." % dir_root
else:
print "- scanning directory [ %s ]" % dir_root
#print recursive, pattern
input_files = pathToList(dir_root,
recursive=recursive,
pattern=pattern)
print "- %d results found" % (len(input_files))
#print input
else:
print "ERROR: Missing input source: specify either file or directories"
usage()
exit(2)
if not input_files:
print "No input files found."
exit(0)
if '-r' in opts: # TODO caching could occur here?
receptor = opts['-r']
if not os.path.isfile(opts['-r']):
print "ERROR! the specified filename is not accessible:", receptor
pattern = opts['-p']
#print "PATTERN", pattern
pattern = pattern.replace('\\', '')
if DEBUG: print "File pattern:", pattern
if '-f' in opts:
input_files = opts['-f'].split(",")
if DEBUG: print "[ file mode:", input_files,"]"
elif '-d' in opts:
dir_root = opts['-d']
if DEBUG: print "[ directory mode: %s ]" % dir_root
if recursive:
print "- scanning sub-directories of [ %s ]..." % dir_root
else:
print "- scanning directory [ %s ]" % dir_root
#print recursive, pattern
input_files = pathToList(dir_root, recursive = recursive, pattern = pattern)
print "- %d results found" % (len(input_files))
#print input
else:
print "ERROR: Missing input source: specify either file or directories"
usage()
exit(2)
if not input_files:
print "No input files found."
exit(0)
if '-r' in opts: # TODO caching could occur here?
receptor = opts['-r']
if not os.path.isfile(opts['-r']):
