def test_make_core_model_fail_4(self):
#Unused variable
__model__ = {
'system_type': ['pyTestModel', 'Dummy'],
'states': ['mRNA', 'Pep', 'UnsedDummy'],
'parameters': ['syn_mRNA', 'deg_mRNA', 'syn_Pep', 'deg_Pep', 'Ki'],
'inputs': ['Ind'],
'equations': [
'dmRNA = syn_mRNA*Ind/(Ind + Ki) - deg_mRNA*mRNA',
'dPep = syn_Pep*mRNA - deg_Pep/0'
],
'ia':
'ia_result_bmss01001.csv'
}
core_model = mh.make_core_model(**__model__)
def test_make_core_model(self):
global core_model_1
__model__ = {
'system_type': ['pyTestModel', 'Dummy'],
'states': ['mRNA', 'Pep'],
'parameters': ['syn_mRNA', 'deg_mRNA', 'syn_Pep', 'deg_Pep', 'Ki'],
'inputs': ['Ind'],
'equations': [
'dmRNA = syn_mRNA*Ind/(Ind + Ki) - deg_mRNA*mRNA',
'dPep = syn_Pep*mRNA - deg_Pep'
],
'ia':
'ia_result_bmss01001.csv'
}
core_model = mh.make_core_model(**__model__)
#Assert here
for key in __model__:
assert core_model[key] is not None
#Save for reuse
core_model_1 = core_model
#Read a .ini file and return a core_model
core_model_1 = mh.from_config(filename)
for key in core_model_1:
print(key)
print(core_model_1[key])
print()
'''
BMSS also provides a constructor that allows you construct core models on the fly.
IMPORTANT: When in doubt, always use the constructor to ensure that your data
is formatted correctly.
'''
core_model_2 = mh.make_core_model(system_type=core_model_1['system_type'],
states=core_model_1['states'],
parameters=core_model_1['parameters'],
inputs=core_model_1['inputs'],
equations=core_model_1['equations'],
ia=core_model_1['ia'])
'''
Once the core model has been created. We can create callable functions that can be used for integration.
'''
#Convert the model into code
#Open the file named TestModel_Dummy.py
code = mh.model_to_code(
core_model_1, local=True) #Don't touch the local argument for now.
#Note that all functions by this code are standardized to accept inputs in the form y, t, params