def drawConsensusTreeBioNexus(self):
if self.path1 != '' and self.path2 != '':
#get files extensions
self.fileExtension1 = (os.path.splitext(self.path1)[1])[1:]
self.fileExtension2 = (os.path.splitext(self.path2)[1])[1:]
#open tree files
self.trees = []
#first tree
self.f = open(self.path1, 'r')
self.tree1 = Trees.Tree(self.f.read())
self.trees.append(self.tree1)
self.f.close()
#second tree
self.f = open(self.path2, 'r')
self.tree2 = Trees.Tree(self.f.read())
self.trees.append(self.tree2)
self.f.close()
#generate consensus tree
self.consensus_tree = Trees.consensus(self.trees)
#draw tree
self.handle = StringIO(self.consensus_tree.to_string(plain_newick=True))
self.tree = Phylo.read(self.handle, 'newick')
self.tree.root.color = '#808080'
Phylo.draw(self.tree)
def showConsensusTreeBio(self):
if self.path1 != '' and self.path2 != '':
# odczytaj rozszerzenie
self.fileEx1 = (os.path.splitext(self.path1)[1])[1:]
self.fileEx2 = (os.path.splitext(self.path2)[1])[1:]
self.trees = []
# pierwsze
self.f = open(self.path1, 'r')
self.tree1 = Trees.Tree(self.f.read())
self.trees.append(self.tree1)
self.f.close()
# drugie
self.f = open(self.path2, 'r')
self.tree2 = Trees.Tree(self.f.read())
self.trees.append(self.tree2)
self.f.close()
self.consensus_tree = Trees.consensus(self.trees)
# SHOWTIME
# rysuj
self.handle = StringIO(
self.consensus_tree.to_string(plain_newick=True))
self.tree = Phylo.read(self.handle, 'newick')
#self.tree.root.color = '#808080'
self.OpenInfoWindow()
else:
print "Nie wybrano punktow"
# WYSWIETLA INFORMACJE
img = pylab.imread('img/wally.png', 'rb')
pylab.imshow(img)
pylab.plot(0, 0)
# DAJE CZYSTY OBRAZ BEZ OSI ** PEWNIE MOZNA PROSCIEJ
frame1 = pylab.gca()
for xlabel_i in frame1.axes.get_xticklabels():
xlabel_i.set_visible(False)
xlabel_i.set_fontsize(0.0)
for xlabel_i in frame1.axes.get_yticklabels():
xlabel_i.set_fontsize(0.0)
xlabel_i.set_visible(False)
for tick in frame1.axes.get_xticklines():
tick.set_visible(False)
for tick in frame1.axes.get_yticklines():
tick.set_visible(False)
# SHOWTIME
pylab.show()
def showConsensusTreeBio(self):
if self.path1 != '' and self.path2 != '':
# odczytaj rozszerzenie
self.fileEx1 = (os.path.splitext(self.path1)[1])[1:]
self.fileEx2 = (os.path.splitext(self.path2)[1])[1:]
self.trees = []
# pierwsze
self.f = open(self.path1, 'r')
self.tree1 = Trees.Tree(self.f.read())
self.trees.append(self.tree1)
self.f.close()
# drugie
self.f = open(self.path2, 'r')
self.tree2 = Trees.Tree(self.f.read())
self.trees.append(self.tree2)
self.f.close()
self.consensus_tree = Trees.consensus(self.trees)
# SHOWTIME
# rysuj
self.handle = StringIO(self.consensus_tree.to_string(plain_newick=True))
self.tree = Phylo.read(self.handle, 'newick')
#self.tree.root.color = '#808080'
self.OpenInfoWindow()
else:
print "Nie wybrano punktow"
# WYSWIETLA INFORMACJE
img = pylab.imread('img/wally.png', 'rb')
pylab.imshow(img)
pylab.plot(0, 0)
# DAJE CZYSTY OBRAZ BEZ OSI ** PEWNIE MOZNA PROSCIEJ
frame1 = pylab.gca()
for xlabel_i in frame1.axes.get_xticklabels():
xlabel_i.set_visible(False)
xlabel_i.set_fontsize(0.0)
for xlabel_i in frame1.axes.get_yticklabels():
xlabel_i.set_fontsize(0.0)
xlabel_i.set_visible(False)
for tick in frame1.axes.get_xticklines():
tick.set_visible(False)
for tick in frame1.axes.get_yticklines():
tick.set_visible(False)
# SHOWTIME
pylab.show()
