def name_filter(sum_dict, align_dict, name_list):
"""Accepts a list of names. Returns a new Summary block and Alignment block which
contain the info only for those names passed."""
new_sum_dict = FSSP.FSSPSumDict()
new_align_dict = copy.deepcopy(align_dict)
for cur_pdb_name in name_list:
for prot_num in sum_dict:
if sum_dict[prot_num].pdb2 + sum_dict[prot_num].chain2 == cur_pdb_name:
new_sum_dict[prot_num] = sum_dict[prot_num]
prot_numbers = sorted(new_sum_dict)
for pos_num in new_align_dict.abs_res_dict:
new_align_dict.abs(pos_num).pos_align_dict = {}
for prot_num in prot_numbers:
new_align_dict.abs(pos_num).pos_align_dict[prot_num] = \
align_dict.abs(pos_num).pos_align_dict[prot_num]
return new_sum_dict, new_align_dict
def filter(sum_dict, align_dict, filter_attribute, low_bound, high_bound):
"""Filter a passed summary section and alignment section.
Filter according to a numeric attribute in the summary section.
Return new summary and alignment sections.
"""
new_sum_dict = FSSP.FSSPSumDict()
new_align_dict = copy.deepcopy(align_dict)
for prot_num in sum_dict:
attr_value = getattr(sum_dict[prot_num], filter_attribute)
if attr_value >= low_bound and attr_value <= high_bound:
new_sum_dict[prot_num] = sum_dict[prot_num]
prot_numbers = sorted(new_sum_dict)
for pos_num in new_align_dict.abs_res_dict:
new_align_dict.abs(pos_num).pos_align_dict = {}
for prot_num in prot_numbers:
new_align_dict.abs(pos_num).pos_align_dict[
prot_num] = align_dict.abs(pos_num).pos_align_dict[prot_num]
return new_sum_dict, new_align_dict
def filter(sum_dict, align_dict, filter_attribute, low_bound, high_bound):
"""filters a passed summary section and alignment section according to a numeric
attribute in the summary section. Returns new summary and alignment sections"""
new_sum_dict = FSSP.FSSPSumDict()
new_align_dict = copy.deepcopy(align_dict)
# for i in align_dict:
# new_align_dict[i] = copy.copy(align_dict[i])
# new_align_dict = copy.copy(align_dict)
for prot_num in sum_dict:
attr_value = getattr(sum_dict[prot_num], filter_attribute)
if attr_value >= low_bound and attr_value <= high_bound:
new_sum_dict[prot_num] = sum_dict[prot_num]
prot_numbers = new_sum_dict.keys()
prot_numbers.sort()
for pos_num in new_align_dict.abs_res_dict:
new_align_dict.abs(pos_num).pos_align_dict = {}
for prot_num in prot_numbers:
new_align_dict.abs(pos_num).pos_align_dict[prot_num] = \
align_dict.abs(pos_num).pos_align_dict[prot_num]
return new_sum_dict, new_align_dict