The Bio.PDB.NeighborSearch module in Python is a useful tool that allows users to search for nearby atoms within a specified radius in a protein structure. This module is part of the Biopython library and provides a convenient interface for searching neighboring atoms based on their spatial coordinates. It efficiently and quickly retrieves atoms that are within a given distance of a reference atom or a specific location in 3D space. This functionality is particularly useful in tasks such as identifying interacting residues or determining the proximity of ligands to specific binding sites in protein structures.
Python PDB.NeighborSearch - 26 examples found. These are the top rated real world Python examples of Bio.PDB.NeighborSearch extracted from open source projects. You can rate examples to help us improve the quality of examples.