Python PipelineRrbs.runBiSeq Examples

Example #1

def runBiSeq_germline(infiles, outfile):
    job_options = "-l mem_free=10G -pe dedicated 10"
    RRBS.runBiSeq(infiles,
                  outfile,
                  "Germline",
                  submit=True,
                  job_options=job_options)

Example #2

def runBiSeq_liver(infiles, outfile):
    job_options = "-l mem_free=10G -pe dedicated 10"
    RRBS.runBiSeq(infiles,
                  outfile,
                  "Liver",
                  submit=True,
                  job_options=job_options)

Example #3

File: pipeline_rrbs.py Project: CGATOxford/CGATPipelines

def runBiSeq_germline(infiles, outfile):
    job_options = "-l mem_free=10G -pe dedicated 10"
    RRBS.runBiSeq(infiles, outfile, "Germline",
                  submit=True, job_options=job_options)

Example #4

File: pipeline_rrbs.py Project: CGATOxford/CGATPipelines

def runBiSeq_liver(infiles, outfile):
    job_options = "-l mem_free=10G -pe dedicated 10"
    RRBS.runBiSeq(infiles, outfile, "Liver",
                  submit=True, job_options=job_options)