def saveResults(self):
try:
if SlicerUtil.isSlicerACILLoaded():
saveResultsRemotely = qt.QMessageBox.question(
slicer.util.mainWindow(), "Save volume remotely?",
"Do you want to save the results remotely?",
qt.QMessageBox.Yes
| qt.QMessageBox.No) == qt.QMessageBox.Yes
else:
saveResultsRemotely = False
# First, save locally to the results directory (as a backup)
labelmap = self.getCurrentLabelMapNode()
localPath = os.path.join(self.saveResultsDirectoryButton.directory,
labelmap.GetName() + ".nrrd")
if saveResultsRemotely:
self.caseNavigatorWidget.uploadVolume(
labelmap,
callbackFunction=self._uploadFileCallback_,
localPath=localPath)
else:
slicer.util.saveNode(labelmap, localPath)
slicer.util.infoDisplay(
"Results saved to '{}'".format(localPath))
except Exception as ex:
Util.print_last_exception()
slicer.util.errorDisplay(ex.message)
def restoreStateBeforeExitingModule(self):
"""Load the last state of the module when the user exited (labelmap, opacity, contrast window, etc.)
"""
try:
if self.savedVolumeID:
# There is a previously saved valid state.
SlicerUtil.setActiveVolumeIds(self.savedVolumeID)
SlicerUtil.changeContrastWindow(self.savedContrastLevel[0],
self.savedContrastLevel[1])
# if self.savedLabelmapID:
# print "Restoring active labelmap: " + self.savedLabelmapID
# # There was a valid labelmap. Restore it
# SlicerUtil.displayLabelmapVolume(self.savedLabelmapID)
# # Restore previous opacity
# SlicerUtil.changeLabelmapOpacity(self.savedLabelmapOpacity)
# else:
# # Hide labelmap
# print "No labelmap saved. Hide all"
# SlicerUtil.displayLabelmapVolume(None)
# else:
# # Hide labelmap
# print "No volume saved. Hide labelmap"
# SlicerUtil.displayLabelmapVolume(None)
# Restore layout
SlicerUtil.changeLayout(self.savedLayout)
except:
Util.print_last_exception()
pass
def saveResultsCurrentNode(self):
""" Get current active node and save the xml fiducials file
"""
try:
d = self.saveResultsDirectoryButton.directory
if not os.path.isdir(d):
# Ask the user if he wants to create the folder
if qt.QMessageBox.question(
slicer.util.mainWindow(), "Create directory?",
"The directory '{0}' does not exist. Do you want to create it?"
.format(d), qt.QMessageBox.Yes
| qt.QMessageBox.No) == qt.QMessageBox.Yes:
try:
os.makedirs(d)
# Make sure that everybody has write permissions (sometimes there are problems because of umask)
os.chmod(d, 0o777)
except:
qt.QMessageBox.warning(
slicer.util.mainWindow(), 'Directory incorrect',
'The folder "{0}" could not be created. Please select a valid directory'
.format(d))
return
else:
# Abort process
SlicerUtil.logDevelop("Saving results process aborted",
includePythonConsole=True)
return
# self.logic.saveCurrentFiducials(d, self.caseNavigatorWidget, self.uploadFileResult)
# qt.QMessageBox.information(slicer.util.mainWindow(), 'Results saved',
# "The results have been saved succesfully")
# else:
if SlicerUtil.isSlicerACILLoaded():
question = qt.QMessageBox.question(
slicer.util.mainWindow(), "Save results remotely?",
"Your results will be saved locally. Do you also want to save your results in your remote server? (MAD, etc.)",
qt.QMessageBox.Yes | qt.QMessageBox.No
| qt.QMessageBox.Cancel)
if question == qt.QMessageBox.Cancel:
return
saveInRemoteRepo = question == qt.QMessageBox.Yes
else:
saveInRemoteRepo = False
self.logic.saveCurrentFiducials(
d,
caseNavigatorWidget=self.caseNavigatorWidget,
callbackFunction=self.uploadFileResult,
saveInRemoteRepo=saveInRemoteRepo)
qt.QMessageBox.information(
slicer.util.mainWindow(), 'Results saved',
"The results have been saved succesfully")
except:
Util.print_last_exception()
qt.QMessageBox.critical(
slicer.util.mainWindow(), "Error when saving the results",
"Error when saving the results. Please review the console for additional info"
)
def refreshTextboxes(self, reset=False):
""" Update the information of the textboxes that give information about the measurements
"""
self.aortaTextBox.setText("0")
self.paTextBox.setText("0")
self.ratioTextBox.setText("0")
self.ratioTextBox.setStyleSheet(
" QLineEdit { background-color: white; color: black}")
volumeId = self.volumeSelector.currentNodeID
# if volumeId not in self.logic.currentVolumesLoaded:
# return
if volumeId:
self.logic.changeActiveRulersColor(volumeId,
self.logic.defaultColor)
aorta = None
pa = None
if not reset:
rulerAorta, newAorta = self.logic.getRulerNodeForVolumeAndStructure(
self.volumeSelector.currentNodeID,
self.logic.AORTA,
createIfNotExist=False)
rulerPA, newPA = self.logic.getRulerNodeForVolumeAndStructure(
self.volumeSelector.currentNodeID,
self.logic.PA,
createIfNotExist=False)
if rulerAorta:
aorta = rulerAorta.GetDistanceMeasurement()
self.aortaTextBox.setText(str(aorta))
if rulerPA:
pa = rulerPA.GetDistanceMeasurement()
self.paTextBox.setText(str(pa))
if pa is not None and aorta is not None and aorta != 0:
try:
ratio = pa / aorta
self.ratioTextBox.setText(str(ratio))
if ratio > 1.0:
# Switch colors ("alarm")
st = " QLineEdit {{ background-color: rgb({0}, {1}, {2}); color: white }}". \
format(int(self.logic.defaultWarningColor[0]*255),
int(self.logic.defaultWarningColor[1]*255),
int(self.logic.defaultWarningColor[2]*255))
self.ratioTextBox.setStyleSheet(st)
self.logic.changeActiveRulersColor(
volumeId, self.logic.defaultWarningColor)
except Exception:
Util.print_last_exception()
def refreshTextboxes(self, reset=False):
""" Update the information of the textboxes that give information about the measurements
"""
self.rvTextBox.setText("0")
self.lvTextBox.setText("0")
self.ratioTextBox.setText("0")
self.ratioTextBox.setStyleSheet(
" QLineEdit { background-color: white; color: black}")
volumeId = self.volumeSelector.currentNodeID
# if volumeId not in self.logic.currentVolumesLoaded:
# return
rv = None
lv = None
if not reset:
rulerRV, newRV = self.logic.getRulerNodeForVolumeAndStructure(
self.volumeSelector.currentNodeID,
self.logic.RV,
createIfNotExist=False)
rulerLV, newLV = self.logic.getRulerNodeForVolumeAndStructure(
self.volumeSelector.currentNodeID,
self.logic.LV,
createIfNotExist=False)
if rulerRV:
rv = rulerRV.GetDistanceMeasurement()
self.rvTextBox.setText(str(rv))
if rulerLV:
lv = rulerLV.GetDistanceMeasurement()
self.lvTextBox.setText(str(lv))
if lv is not None and rv is not None and rv != 0:
try:
ratio = lv / rv
self.ratioTextBox.setText(str(ratio))
if ratio > 1.0:
# Switch colors ("alarm")
st = " QLineEdit {{ background-color: rgb({0}, {1}, {2}); color: white }}". \
format(int(self.logic.defaultWarningColor[0]*255),
int(self.logic.defaultWarningColor[1]*255),
int(self.logic.defaultWarningColor[2]*255))
self.ratioTextBox.setStyleSheet(st)
except Exception:
Util.print_last_exception()
def saveResultsCurrentNode(self):
""" Get current active node and save the xml fiducials file
"""
try:
d = self.saveResultsDirectoryButton.directory
if not os.path.isdir(d):
# Ask the user if he wants to create the folder
if qt.QMessageBox.question(
slicer.util.mainWindow(), "Create directory?",
"The directory '{0}' does not exist. Do you want to create it?"
.format(d), qt.QMessageBox.Yes
| qt.QMessageBox.No) == qt.QMessageBox.Yes:
try:
os.makedirs(d)
# Make sure that everybody has write permissions (sometimes there are problems because of umask)
os.chmod(d, 0777)
except:
qt.QMessageBox.warning(
slicer.util.mainWindow(), 'Directory incorrect',
'The folder "{0}" could not be created. Please select a valid directory'
.format(d))
return
self.logic.saveCurrentFiducials(d,
self.caseNavigatorWidget,
self.uploadFileResult)
qt.QMessageBox.information(
slicer.util.mainWindow(), 'Results saved',
"The results have been saved succesfully")
else:
self.logic.saveCurrentFiducials(d, self.caseNavigatorWidget,
self.uploadFileResult)
qt.QMessageBox.information(
slicer.util.mainWindow(), 'Results saved',
"The results have been saved succesfully")
except:
Util.print_last_exception()
qt.QMessageBox.critical(
slicer.util.mainWindow(), "Error when saving the results",
"Error when saving the results. Please review the console for additional info"
)
def saveStateBeforeEnteringModule(self):
"""Save the state of the module regarding labelmap, etc. This state will be saved/loaded when
exiting/entering the module
"""
if self.preventSavingState:
# Avoid that the first time that the module loads, the state is saved twice
self.preventSavingState = False
return
# Save existing layout
self.savedLayout = None
if slicer.app.layoutManager() is not None:
self.savedLayout = slicer.app.layoutManager().layout
# Get the active volume (it it exists)
activeVolumeId = SlicerUtil.getFirstActiveVolumeId()
if activeVolumeId is None:
# Reset state
self.resetModuleState()
else:
# There is a Volume loaded. Save state
try:
self.savedVolumeID = activeVolumeId
displayNode = SlicerUtil.getNode(
activeVolumeId).GetDisplayNode()
self.savedContrastLevel = (displayNode.GetWindow(),
displayNode.GetLevel())
# activeLabelmapId = SlicerUtil.getFirstActiveLabelmapId()
# self.savedLabelmapID = activeLabelmapId
# if activeLabelmapId is None:
# self.savedLabelmapOpacity = None
# else:
# self.savedLabelmapOpacity = SlicerUtil.getLabelmapOpacity()
# # Hide any labelmap
# SlicerUtil.displayLabelmapVolume(None)
except:
Util.print_last_exception()
# Not action really needed
pass
def refreshTextboxes(self, reset=False):
""" Update the information of the textboxes that give information about the measurements
"""
self.aortaTextBox.setText("0")
self.paTextBox.setText("0")
self.ratioTextBox.setText("0")
self.ratioTextBox.setStyleSheet(" QLineEdit { background-color: white; color: black}")
volumeId = self.volumeSelector.currentNodeId
if volumeId not in self.logic.currentVolumesLoaded:
return
if volumeId:
self.logic.changeColor(volumeId, self.logic.defaultColor)
aorta = None
pa = None
if not reset:
rulerAorta, newAorta = self.logic.getRulerNodeForVolumeAndStructure(
self.volumeSelector.currentNodeId, self.logic.AORTA, createIfNotExist=False
)
rulerPA, newPA = self.logic.getRulerNodeForVolumeAndStructure(
self.volumeSelector.currentNodeId, self.logic.PA, createIfNotExist=False
)
if rulerAorta:
aorta = rulerAorta.GetDistanceMeasurement()
self.aortaTextBox.setText(str(aorta))
if rulerPA:
pa = rulerPA.GetDistanceMeasurement()
self.paTextBox.setText(str(pa))
if aorta is not None and aorta != 0:
try:
ratio = pa / aorta
self.ratioTextBox.setText(str(ratio))
if ratio > 1:
# Switch colors ("alarm")
self.ratioTextBox.setStyleSheet(" QLineEdit { background-color: rgb(255, 0, 0); color: white}")
self.logic.changeColor(volumeId, self.logic.defaultWarningColor)
except Exception:
Util.print_last_exception()
