def createManualAnnotationsGivenConfigFile(configFile):
"""
Assumes a config file as:
[manual_annotations]
# annotation3 has blank ('') value
override:annotation1=value1,annotation2=value2,annotation3=,annotation4=value4
Returns a dictionary:
{annotation1:value1,annotation2:value2,annotation3:'',annotation4=value4}
"""
if (configFile is None) or (configFile.strip() == ""):
return dict()
if not os.path.exists(configFile):
logging.getLogger(__name__).warn(
"Could not find annotation config file: " + configFile + " ... Proceeding without it."
)
return dict()
config = ConfigUtils.createConfigParser(configFile)
opts = config.get("manual_annotations", "override").split(",")
result = dict()
for optTmp in opts:
opt = optTmp.split("=")
if (len(opt) == 1) or (opt[1] is None):
opt[1] = ""
result[opt[0]] = opt[1]
return result
def createManualAnnotationsGivenConfigFile(configFile):
"""
Assumes a config file as:
[manual_annotations]
# annotation3 has blank ('') value
override:annotation1=value1,annotation2=value2,annotation3=,annotation4=value4
Returns a dictionary:
{annotation1:value1,annotation2:value2,annotation3:'',annotation4=value4}
"""
if (configFile is None) or (configFile.strip() == ''):
return dict()
if not os.path.exists(configFile):
logging.getLogger(
__name__).warn("Could not find annotation config file: " +
configFile + " ... Proceeding without it.")
return dict()
config = ConfigUtils.createConfigParser(configFile)
opts = config.get('manual_annotations', 'override').split(',')
result = dict()
for optTmp in opts:
opt = optTmp.split('=')
if (len(opt) == 1) or (opt[1] is None):
opt[1] = ''
result[opt[0]] = opt[1]
return result
