def __init__(self, _strPluginName=None, _strConfigurationFileName=None, _ccp4DataInputControlPipelineCalcDiffMap=None):
"""
@param _strPluginName: name of control plugin to load
@type _strPluginName: string
@param _strConfigurationFileName: the configuration file to use
@type _strConfigurationFileName: string
@param _ccp4DataInputControlPipelineCalcDiffMap: the input object to use
@type _ccp4DataInputControlPipelineCalcDiffMap: CCP4DataInputControlPipelineCalcDiffMap
"""
EDApplication.__init__(self, _strName=EDApplicationDimplev0.APPLICATION_NAME, \
_strVersion=EDApplicationDimplev0.APPLICATION_VERSION, \
_strPluginName=_strPluginName, \
_strConfigurationFileName=_strConfigurationFileName)
self.colLabelI = None
self.colLabelSIGI = None
self.strPDBIn = None
self.strPDBOut = None
self.strMTZIn = None
self.strMTZOut = None
self.inputXMLFile = None
self.inputXMLFileName = None
self.ccp4DataInputControlPipelineCalcDiffMap = _ccp4DataInputControlPipelineCalcDiffMap
self.strPluginName = _strPluginName
self.strDatasetFileName = None
self.xsDataOutput = None
def configure(self):
"""
Configuration step of the plugin: mainly extend the timeout by 5 seconds to let the plugin finish.
"""
self.DEBUG("EDPluginWaitFile.configure : %s" % self.getClassName())
xsPluginItem = self.getConfiguration()
if xsPluginItem is None:
xsPluginItem = EDApplication.getApplicationPluginConfiguration(self.getPluginName())
if (xsPluginItem is None):
# No application wide configuration file found! Try to find a project specific config file:
xsPluginItem = EDApplication.getProjectPluginConfiguration(self.getPluginName())
if (xsPluginItem is None):
self.DEBUG("EDPlugin.execute: No plugin configuration found for " + self.getPluginName())
xsPluginItem = XSPluginItem()
else:
self.setConfiguration(xsPluginItem)
# Try to get time out from plugin configuration
iTimeOut = EDConfiguration.getIntegerParamValue(xsPluginItem, EDPlugin.CONF_TIME_OUT)
if iTimeOut is not None:
self.DEBUG("EDPlugin.configure: Setting time out to %d s from plugin configuration." % iTimeOut)
self.__timeout = iTimeOut
self.setTimeOut(iTimeOut + EDPluginWaitFile.EXTRA_TIME)
def __init__(self, _strTestName=None):
EDTestCasePluginExecute.__init__(self, _strTestName)
self.setConfigurationFile(self.getRefConfigFile())
edPluginMOSFLM = self.createPlugin()
xsPluginItem = edPluginMOSFLM.getConfiguration()
if xsPluginItem is None:
xsPluginItem = EDApplication.getApplicationPluginConfiguration(self.getPluginName())
if xsPluginItem is None:
# No application wide configuration file found! Try to find a project specific config file:
xsPluginItem = EDApplication.getProjectPluginConfiguration(self.getPluginName())
if xsPluginItem is None:
EDVerbose.DEBUG("EDPlugin.configure: No plugin configuration found for " + self.getPluginName())
xsPluginItem = XSPluginItem()
else:
edPluginMOSFLM.setConfiguration(xsPluginItem)
# edPluginMOSFLM.configure()
strMOSFLMVersion = edPluginMOSFLM.getStringConfigurationParameterValue("execProcessScriptVersionString")
if strMOSFLMVersion.find("7.0.1") != -1:
strResultDir = "executionTestResult_v701_20070820"
elif strMOSFLMVersion.find("7.0.5") != -1:
strResultDir = "executionTestResult_v706_20090812"
elif strMOSFLMVersion.find("7.0.6") != -1:
strResultDir = "executionTestResult_v706_20100126"
else:
strResultDir = "executionTestResult_v707_20101220"
strPluginTestDataHome = self.getPluginTestsDataHome()
self.strExecutionTestDataInputHome = os.path.join(strPluginTestDataHome, "executionTestInput")
self.strExecutionTestDataResultHome = os.path.join(strPluginTestDataHome, strResultDir)
def __init__(self, _strPluginName=None, _strConfigurationFileName=None):
"""
@param _strPluginName: name of control plugin to load
@type _strPluginName: string
@param _strConfigurationFileName: the configuration file to use
@type _strConfigurationFileName: string
"""
EDApplication.__init__(self, _strName=EDApplicationSASPipeline.APPLICATION_NAME, \
_strVersion=EDApplicationSASPipeline.APPLICATION_VERSION, \
_strPluginName=_strPluginName, \
_strConfigurationFileName=_strConfigurationFileName)
self.__strDatasetFileName = None
self.__strNxsQ = None
self.__strNxsData = None
self.__strDatasetFileName = None
self.__bProcess = True
self.__strPluginName = None
self.__strDataInputFilePath = None
self.__fRMaxStart = 10.0
self.__fRMaxStop = 200.0
self.__iRMaxIntervals = 10
self.__fRMaxAbsTol = 0.1
self.__strMode = "Fast"
self.__strSymmetry = "P1"
self.__bOnlyGnom = False
self.__bPlotFit = False
self.__iThreads = None
self.__iUnit = 1
self.__iColumns = 1
self.__fQMin = None
self.__fQMax = None
def __init__(self, _strPluginName=None, _strConfigurationFileName=None, _bUseWSGI=False):
"""
@param _strPluginName: name of control plugin to load
@type _strPluginName: string
@param _strConfigurationFileName: the configuration file to use
@type _strConfigurationFileName: string
"""
EDApplication.__init__(self, _strName=EDApplicationXAFSBatchProcessing.APPLICATION_NAME, \
_strVersion=EDApplicationXAFSBatchProcessing.APPLICATION_VERSION, \
_strPluginName=_strPluginName, \
_strConfigurationFileName=_strConfigurationFileName)
self.__strDatasetFileName = None
self.__strDataInputFilePath = None
self.__strNxsEnergy = '/entry1/counterTimer01/Energy'
self.__strNxsI0 = '/entry1/counterTimer01/I0'
self.__strNxsIref = '/entry1/counterTimer01/Iref'
self.__strNxsIt = '/entry1/counterTimer01/It'
self.__strNxsTime = '/entry1/counterTimer01/Time'
self.__strNxsLnI0Iref = '/entry1/counterTimer01/lnI0Iref'
self.__strNxsLnI0It = '/entry1/counterTimer01/lnI0It'
self.__strNxsScanIndex = '/entry1/entry_identifier'
self.__fRbkg = 1.0
self.__fftfKmin = 2.0
self.__fftfKmax = 17.0
self.__fftfDk = 1.0
self.__fftfKweight = 2.0
self.__bProcess = True
self.__bUseWSGI = _bUseWSGI
self.__edPlugin = None
def __init__(self,
_strPluginName=None,
_strConfigurationFileName=None,
_ccp4DataInputControlPipelineCalcDiffMap=None):
"""
@param _strPluginName: name of control plugin to load
@type _strPluginName: string
@param _strConfigurationFileName: the configuration file to use
@type _strConfigurationFileName: string
@param _ccp4DataInputControlPipelineCalcDiffMap: the input object to use
@type _ccp4DataInputControlPipelineCalcDiffMap: CCP4DataInputControlPipelineCalcDiffMap
"""
EDApplication.__init__(self, _strName=EDApplicationDimplev0.APPLICATION_NAME, \
_strVersion=EDApplicationDimplev0.APPLICATION_VERSION, \
_strPluginName=_strPluginName, \
_strConfigurationFileName=_strConfigurationFileName)
self.colLabelI = None
self.colLabelSIGI = None
self.strPDBIn = None
self.strPDBOut = None
self.strMTZIn = None
self.strMTZOut = None
self.inputXMLFile = None
self.inputXMLFileName = None
self.ccp4DataInputControlPipelineCalcDiffMap = _ccp4DataInputControlPipelineCalcDiffMap
self.strPluginName = _strPluginName
self.strDatasetFileName = None
self.xsDataOutput = None
def preProcess(self):
"""
Processes the command line, creates the plugins
"""
EDApplication.preProcess(self)
EDVerbose.DEBUG("EDApplicationXAFSDataProcessing.preProcess")
# Read command line parameters and check if they are ok
self.__bProcess = self.readAndProcessCommandLine()
def testSendEmail(self):
pluginMXCuBE = self.createPlugin()
strPathToTestConfig = os.path.join(self.getPluginTestsDataHome(),
"XSConfiguration.xml")
edConfiguration = EDConfiguration(strPathToTestConfig)
edConfiguration.load()
EDApplication.setConfiguration(edConfiguration)
pluginMXCuBE.configure()
pluginMXCuBE.sendEmail("EDTestCasePluginUnitControlInterfaceToMXCuBEv1_2sendEmail: Test subject", "EDTestCasePluginUnitControlInterfaceToMXCuBEv1_2sendEmail: Test message")
def preProcess(self):
"""
Processes the command line, creates the plugins
"""
EDApplication.preProcess(self)
EDVerbose.DEBUG("EDApplicationSASPipeline.preProcess")
# Read command line parameters and check if they are ok
self.__bProcess = self.readAndProcessCommandLine()
def preProcess(self):
"""
Processes the command line, creates the plugins
"""
EDApplication.preProcess(self)
EDVerbose.DEBUG("EDApplicationXAFSBatchProcessing.preProcess")
# Read command line parameters and check if they are ok
if not self.__bUseWSGI:
self.__bProcess = self.readAndProcessCommandLine()
def doFailureActionPlugin(self, _edPlugin=None):
"""
retrieve the potential warning messages
retrieve the potential error messages
"""
EDApplication.doFailureActionPlugin(self, _edPlugin)
EDVerbose.DEBUG("EDApplicationXAFSBatchProcessing.doFailureActionPlugin")
EDVerbose.screen("Execution of " + _edPlugin.getPluginName() + " failed.")
EDVerbose.screen("Please inspect the log file for further information.")
def testSendEmail(self):
pluginMXCuBE = self.createPlugin()
strPathToTestConfig = os.path.join(self.getPluginTestsDataHome(),
"XSConfiguration.xml")
edConfiguration = EDConfiguration(strPathToTestConfig)
edConfiguration.load()
EDApplication.setConfiguration(edConfiguration)
pluginMXCuBE.configure()
pluginMXCuBE.sendEmail(
"EDTestCasePluginUnitControlInterfaceToMXCuBEv1_2sendEmail: Test subject",
"EDTestCasePluginUnitControlInterfaceToMXCuBEv1_2sendEmail: Test message"
)
def doSuccessActionPlugin(self, _edPlugin=None):
"""
retrieve the potential warning messages
"""
EDApplication.doSuccessActionPlugin(self, _edPlugin)
EDVerbose.DEBUG("EDApplicationXAFSBatchProcessing.doSuccessActionPlugin")
if (_edPlugin.getListOfErrorMessages() != []):
self.doFailureActionPlugin(_edPlugin)
elif (_edPlugin.getListOfWarningMessages() != []):
EDVerbose.screen("XAFS data processing successful with warning messages, please check the log file.")
else:
EDVerbose.screen("XAFS data processing successful!")
def testGenerateXSDataResultPowderIntegration(self):
strReferenceInputFile = os.path.join(self.m_strDataPath, "XSDataResultFIT2DCake_reference.xml")
strXMLInput = EDUtilsTest.readAndParseFile(strReferenceInputFile)
EDApplication.loadModule("XSDataFIT2Dv1_0")
from XSDataFIT2Dv1_0 import XSDataResultFIT2DCake
xsDataResultFIT2DCake = XSDataResultFIT2DCake.parseString(strXMLInput)
from EDHandlerXSDataFIT2Dv1_0 import EDHandlerXSDataFIT2Dv1_0
edHandlerXSDataFIT2Dv1_0 = EDHandlerXSDataFIT2Dv1_0()
xsDataResultPowderDiffraction = edHandlerXSDataFIT2Dv1_0.getXSDataResultPowderIntegration(xsDataResultFIT2DCake)
strReferencePath = os.path.join(self.m_strDataPath, "XSDataResultPowderIntegration_reference.xml")
strXMLResultReference = EDUtilsTest.readAndParseFile(strReferencePath)
EDApplication.loadModule("XSDataDiffractionCTv1")
from XSDataDiffractionCTv1 import XSDataResultPowderIntegration
xsDataResultPowderIntegrationReference = XSDataResultPowderIntegration.parseString(strXMLResultReference)
EDAssert.equal(xsDataResultPowderIntegrationReference.marshal(), xsDataResultPowderDiffraction.marshal())
def doSuccessActionPlugin(self, _edPlugin=None):
"""
retrieve the potential warning messages and set the output
"""
EDApplication.doSuccessActionPlugin(self, _edPlugin)
EDVerbose.DEBUG("EDApplicationDimplev0.doSuccessActionPlugin")
xsDataOutput = _edPlugin.getDataOutput()
if (_edPlugin.getListOfErrorMessages() != []):
self.doFailureActionPlugin(_edPlugin)
elif (_edPlugin.getListOfWarningMessages() != []):
EDVerbose.screen("Dimplev0 successful with warning messages, please check the log file.")
else:
EDVerbose.screen("Dimplev0 successful!")
def __init__(self,
_strPluginName=None,
_strConfigurationFileName=None,
_xsDataInputCharacterisation=None,
_strComments=None,
_strShortComments=None):
"""
@param _strPluginName: name of control plugin to load
@type _strPluginName: string
@param _strConfigurationFileName: the configuration file to use
@type _strConfigurationFileName: string
@param _xsDataInputCharacterisation: the input characterisation object to use
@type _xsDataInputCharacterisation: XSDataInputCharacterisation
"""
EDApplication.__init__(self, _strName=EDApplicationMXv1Characterisation.APPLICATION_NAME, \
_strVersion=EDApplicationMXv1Characterisation.APPLICATION_VERSION, \
_strPluginName=_strPluginName, \
_strConfigurationFileName=_strConfigurationFileName)
self.__listImagePaths = None
self.__strDatasetFileName = None
self.__fFlux = None
self.__fMaxExposureTimePerDataCollection = 10000 # s, default MXv1 value
self.__fMinExposureTimePerImage = None
self.__fBeamSize = None
self.__bTemplateMode = False
self.__strGeneratedTemplateFile = None
self.__strComplexity = "none"
self.__strResultsFilePath = None
self.__strForcedSpaceGroup = None
self.__bAnomalousData = False
self.__fBeamPosX = None
self.__fBeamPosY = None
self.__strStrategyOption = None
self.__fDoseLimit = None
self.__fAimedResolution = None
self.__fAimedCompleteness = None
self.__fAimedMultiplicity = None
self.__bProcess = True
self.__iDataCollectionId = None
self.__xsDataInputCharacterisation = _xsDataInputCharacterisation
self.__strPluginName = None
self.__strDataInputFilePath = None
self.__strShortComments = _strShortComments
self.__strComments = _strComments
self.__fTransmission = None
def doSuccessActionPlugin(self, _edPlugin=None):
"""
retrieve the potential warning messages and set the output
"""
EDApplication.doSuccessActionPlugin(self, _edPlugin)
EDVerbose.DEBUG("EDApplicationDimplev0.doSuccessActionPlugin")
xsDataOutput = _edPlugin.getDataOutput()
if (_edPlugin.getListOfErrorMessages() != []):
self.doFailureActionPlugin(_edPlugin)
elif (_edPlugin.getListOfWarningMessages() != []):
EDVerbose.screen(
"Dimplev0 successful with warning messages, please check the log file."
)
else:
EDVerbose.screen("Dimplev0 successful!")
def preProcess(self):
"""
Processes the command line, creates the plugins
"""
EDApplication.preProcess(self)
EDVerbose.DEBUG("EDApplicationDimplev0.preProcess")
if self.ccp4DataInputControlPipelineCalcDiffMap == None:
# Read command line parameters and check if they are ok
self.__bProcess = self.readAndProcessCommandLine()
if (self.__bProcess) and not (self.strDatasetFileName is None):
# Check if XML data is given as input :
if (self.strDatasetFileName is not None):
try:
self.ccp4DataInputControlPipelineCalcDiffMap = CCP4DataInputControlPipelineCalcDiffMap.parseFile(self.strDatasetFileName)
except Exception:
errorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % ("EDApplicationDimplev0.process", self.strDatasetFileName)
EDVerbose.error(errorMessage)
raise RuntimeError, errorMessage
def testGenerateXSDataResultPowderIntegration(self):
strReferenceInputFile = os.path.join(
self.m_strDataPath, "XSDataResultFIT2DCake_reference.xml")
strXMLInput = EDUtilsTest.readAndParseFile(strReferenceInputFile)
EDApplication.loadModule("XSDataFIT2Dv1_0")
from XSDataFIT2Dv1_0 import XSDataResultFIT2DCake
xsDataResultFIT2DCake = XSDataResultFIT2DCake.parseString(strXMLInput)
from EDHandlerXSDataFIT2Dv1_0 import EDHandlerXSDataFIT2Dv1_0
edHandlerXSDataFIT2Dv1_0 = EDHandlerXSDataFIT2Dv1_0()
xsDataResultPowderDiffraction = edHandlerXSDataFIT2Dv1_0.getXSDataResultPowderIntegration(
xsDataResultFIT2DCake)
strReferencePath = os.path.join(
self.m_strDataPath, "XSDataResultPowderIntegration_reference.xml")
strXMLResultReference = EDUtilsTest.readAndParseFile(strReferencePath)
EDApplication.loadModule("XSDataDiffractionCTv1")
from XSDataDiffractionCTv1 import XSDataResultPowderIntegration
xsDataResultPowderIntegrationReference = XSDataResultPowderIntegration.parseString(
strXMLResultReference)
EDAssert.equal(xsDataResultPowderIntegrationReference.marshal(),
xsDataResultPowderDiffraction.marshal())
def preProcess(self):
"""
Processes the command line, creates the plugins
"""
EDApplication.preProcess(self)
EDVerbose.DEBUG("EDApplicationMXv1Characterisation.preProcess")
if self.__xsDataInputCharacterisation == None:
# Read command line parameters and check if they are ok
self.__bProcess = self.readAndProcessCommandLine()
if (self.__bProcess) and not (self.__strDatasetFileName is None):
# Check if XML data is given as input :
if (self.__strDatasetFileName is not None):
try:
self.__xsDataInputCharacterisation = XSDataInputCharacterisation.parseFile(self.__strDatasetFileName)
except:
errorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % ("EDApplicationMXv1Characterisation.process", self.__strDatasetFileName)
EDVerbose.error(errorMessage)
raise RuntimeError, errorMessage
def getPluginConfiguration(self, _strPluginName=None):
# Load the configuration file if provided
if _strPluginName == None:
_strPluginName = self.getPluginName()
if _strPluginName in self.__dictConfigurations :
xsConfiguration = self.__dictConfigurations[_strPluginName]
else:
xsConfiguration = None
if (self.__strConfigurationFile is not None):
edConfigurationTest = EDConfiguration(self.__strConfigurationFile)
edConfigurationTest.load()
if (edConfigurationTest is not None):
xsConfiguration = edConfigurationTest.getPluginItem(_strPluginName)
if xsConfiguration is None:
xsConfiguration = EDApplication.getApplicationPluginConfiguration(_strPluginName)
if xsConfiguration is None:
# No application wide configuration file found! Try to find a project specific config file:
xsConfiguration = EDApplication.getProjectPluginConfiguration(_strPluginName)
if xsConfiguration is None:
EDVerbose.WARNING("EDTestCasePlugin.getPluginConfiguration: xsConfiguration is still None after all guesses: Expect to fail soon")
self.__dictConfigurations[_strPluginName] = xsConfiguration
return xsConfiguration
def preProcess(self):
"""
Processes the command line, creates the plugins
"""
EDApplication.preProcess(self)
EDVerbose.DEBUG("EDApplicationDimplev0.preProcess")
if self.ccp4DataInputControlPipelineCalcDiffMap == None:
# Read command line parameters and check if they are ok
self.__bProcess = self.readAndProcessCommandLine()
if (self.__bProcess) and not (self.strDatasetFileName is None):
# Check if XML data is given as input :
if (self.strDatasetFileName is not None):
try:
self.ccp4DataInputControlPipelineCalcDiffMap = CCP4DataInputControlPipelineCalcDiffMap.parseFile(
self.strDatasetFileName)
except Exception:
errorMessage = EDMessage.ERROR_CANNOT_READ_FILE_02 % (
"EDApplicationDimplev0.process",
self.strDatasetFileName)
EDVerbose.error(errorMessage)
raise RuntimeError, errorMessage
def __init__(self, _strPluginName=None, _strConfigurationFileName=None, _xsDataInputCharacterisation=None, _strComments = None, _strShortComments = None):
"""
@param _strPluginName: name of control plugin to load
@type _strPluginName: string
@param _strConfigurationFileName: the configuration file to use
@type _strConfigurationFileName: string
@param _xsDataInputCharacterisation: the input characterisation object to use
@type _xsDataInputCharacterisation: XSDataInputCharacterisation
"""
EDApplication.__init__(self, _strName=EDApplicationMXv1Characterisation.APPLICATION_NAME, \
_strVersion=EDApplicationMXv1Characterisation.APPLICATION_VERSION, \
_strPluginName=_strPluginName, \
_strConfigurationFileName=_strConfigurationFileName)
self.__listImagePaths = None
self.__strDatasetFileName = None
self.__fFlux = None
self.__fMaxExposureTimePerDataCollection = 10000 # s, default MXv1 value
self.__fMinExposureTimePerImage = None
self.__fBeamSize = None
self.__bTemplateMode = False
self.__strGeneratedTemplateFile = None
self.__strComplexity = "none"
self.__strResultsFilePath = None
self.__strForcedSpaceGroup = None
self.__bAnomalousData = False
self.__fBeamPosX = None
self.__fBeamPosY = None
self.__strStrategyOption = None
self.__bProcess = True
self.__iDataCollectionId = None
self.__xsDataInputCharacterisation = _xsDataInputCharacterisation
self.__strPluginName = None
self.__strDataInputFilePath = None
self.__strShortComments = _strShortComments
self.__strComments = _strComments
self.__fTransmission = None
def getStringConfigurationParameterValue(self, _strConfigurationParameterName):
"""
This method returns a configuration parameter value if a corresponding configuration
parameter name can be found in the configuration file.
If an application wide configuration file is provided via EDApplication it will
override the product configuration file.
The configuration parameter is then searched in the configration file in following order:
- If a plugin configuration item exists and the configration parameter name is present it will be used.
- Otherwise if a product-wide (e.g. "mxPluginExec") configuration value exists it will be used.
"""
self.DEBUG("EDPlugin.getConfigurationParameterValue")
strParameteValue = None
xsPluginItem = self.getConfiguration()
bFoundConfigurationParameter = False
if xsPluginItem:
strParameteValue = EDConfiguration.getParamItem(xsPluginItem, _strConfigurationParameterName).getValue()
if strParameteValue:
bFoundConfigurationParameter = True
if not bFoundConfigurationParameter:
xsPluginItem = EDApplication.getApplicationPluginConfiguration(self.getPluginName())
if xsPluginItem:
strParameteValue = EDConfiguration.getParamItem(xsPluginItem, _strConfigurationParameterName).getValue()
if strParameteValue:
bFoundConfigurationParameter = True
if not bFoundConfigurationParameter:
xsPluginItem = EDApplication.getProjectPluginConfiguration(self.getPluginName())
if xsPluginItem:
strParameteValue = EDConfiguration.getParamItem(xsPluginItem, _strConfigurationParameterName).getValue()
if strParameteValue:
bFoundConfigurationParameter = True
return strParameteValue
def __init__(self, cl, name): PyTango.Device_3Impl.__init__(self, cl, name) EDTangoServer.init_device(self) # Initialise the plugin factory self.m_edFactoryPlugin = EDApplication.getFactoryPlugin() EDVerbose.setVerboseDebugOn()
import os, shutil
from EDVerbose import EDVerbose
from XSDataCommon import XSDataInput
from XSDataCommon import XSDataResult
from XSDataCommon import XSDataFile
from XSDataCommon import XSDataString
from EDMessage import EDMessage
from EDConfiguration import EDConfiguration
from EDPluginExecProcessScript import EDPluginExecProcessScript
from XSDataFIT2Dv1_0 import XSDataInputFIT2DCake
from XSDataFIT2Dv1_0 import XSDataResultFIT2DCake
# Use the EDF image header reader plugin for localising the EdfFile module
from EDApplication import EDApplication
EDApplication.loadModule("EDPluginEDFReadHeaderv1_0")
import EdfFile as EDF
import CIFfile
import numpy as NP
class EDPluginFIT2DCakev1_1(EDPluginExecProcessScript):
"""
The purpose of this plugin is to use FIT2D to do "cake" integration,
i.e. azimutal integration of powder diffraction images.
version 1.1 correspond to the first trial to get rid of the null-X-server
"""
def __init__(self):
"""
__authors__ = ["Olof Svensson", "Jerome Kieffer"] __contact__ = "*****@*****.**" __license__ = "GPLv3" __date__ = "2010-02-02" __copyright__ = "ESRF" # # Set up PYTHON path for the EDNA kernel # # First locate EDNA_HOME # import sys, os.path pyStrProgramPath = os.path.abspath(sys.argv[0]) pyStrBinPath = os.path.split(pyStrProgramPath)[0] pyStrKernelPath = os.path.split(pyStrBinPath)[0] pyStrEdnaHomePath = os.path.split(pyStrKernelPath)[0] os.environ["EDNA_HOME"] = pyStrEdnaHomePath # # Then add kernel/src to PYTHONPATH # sys.path.append(os.path.join(pyStrEdnaHomePath, "edna-kernel", "src")) # # Now the EDApplication can be imported and started # from EDApplication import EDApplication edApplication = EDApplication() edApplication.execute()
def __init__ (self):
EDApplication.__init__(self)
self.__edTestCase = None
EDVerbose.setTestOn()
def configure(self):
"""
Should be overridden by the Final Plugin If needed
This method should set its proper members attributes from a Plugin configuration Object
"""
self.DEBUG("EDPlugin.configure : %s" % self.getClassName())
xsPluginItem = self.getConfiguration()
if xsPluginItem is None:
xsPluginItem = EDApplication.getApplicationPluginConfiguration(self.getPluginName())
if (xsPluginItem is None):
# No application wide configuration file found! Try to find a project specific config file:
xsPluginItem = EDApplication.getProjectPluginConfiguration(self.getPluginName())
if (xsPluginItem is None):
self.DEBUG("EDPlugin.configure: No plugin configuration found for " + self.getPluginName())
xsPluginItem = XSPluginItem()
else:
self.setConfiguration(xsPluginItem)
# set Timeout if different from default one
if self.getTimeOut() == self.getDefaultTimeOut():
# Try to get time out from plugin configuration
iTimeOut = EDConfiguration.getIntegerParamValue(xsPluginItem, EDPlugin.CONF_TIME_OUT)
if iTimeOut is not None:
self.DEBUG("EDPlugin.configure: Setting time out to %d s from plugin configuration." % iTimeOut)
self.setTimeOut(iTimeOut)
else:
self.DEBUG("EDPlugin.configure: Working directory already set before plugin is configured.")
# Base directory
strBaseDirectory = self.getBaseDirectory()
if (strBaseDirectory is None):
# Try to get base directory from plugin configuration
strBaseDirectory = EDConfiguration.getStringParamValue(xsPluginItem, EDPlugin.CONF_BASE_DIR_LABEL)
if(strBaseDirectory is None):
# Try to get working directory from environment variable
strBaseDirectory = os.environ.get("EDNA_BASE_DIRECTORY")
if (strBaseDirectory is None):
self.DEBUG("EDPlugin.configure: Using current base directory as working directory.")
strBaseDirectory = os.getcwd()
else:
self.DEBUG("EDPlugin.configure: Setting base directory from $EDNA_WORKING_DIRECTORY.")
else:
if (strBaseDirectory == "."):
self.DEBUG("EDPlugin.configure: Using current base directory as working directory.")
strBaseDirectory = os.getcwd()
else:
strBaseDirectory = os.path.abspath(strBaseDirectory)
self.DEBUG("EDPlugin.configure: Setting base directory from plugin configuration.")
self.setBaseDirectory(strBaseDirectory)
else:
self.DEBUG("EDPlugin.configure: Base directory already set before plugin is configured.")
# Working directory
strWorkingDirectory = self.getWorkingDirectory()
if (strWorkingDirectory is None):
# Try to get working directory from plugin configuration
strWorkingDirectory = EDConfiguration.getStringParamValue(xsPluginItem, EDPlugin.CONF_WORKING_DIR_LABEL)
if(strWorkingDirectory is not None):
self.DEBUG("EDPlugin.configure: Setting working directory from plugin configuration.")
else:
self.DEBUG("EDPlugin.configure: Setting working directory as base directory + base name.")
strWorkingDirectory = os.path.join(self.getBaseDirectory(), self.getBaseName())
self.setWorkingDirectory(strWorkingDirectory)
else:
self.DEBUG("EDPlugin.configure: Working directory already set before plugin is configured.")
#
strWriteXMLInputOutput = EDConfiguration.getStringParamValue(xsPluginItem, EDPlugin.CONF_WRITE_XML_INPUT_OUTPUT)
if strWriteXMLInputOutput != None:
if strWriteXMLInputOutput.lower().strip() in ["false", "0"]:
self.__bWriteDataXMLInputOutput = False
else:
self.__bWriteDataXMLInputOutput = True
strWriteXMLOutput = EDConfiguration.getStringParamValue(xsPluginItem, EDPlugin.CONF_WRITE_XML_OUTPUT)
if strWriteXMLOutput != None:
if strWriteXMLOutput.lower().strip() in ["false", "0"]:
self.__bWriteDataXMLOutput = False
else:
self.__bWriteDataXMLOutput = True
strWriteXMLInput = EDConfiguration.getStringParamValue(xsPluginItem, EDPlugin.CONF_WRITE_XML_INPUT)
if strWriteXMLInput != None:
if strWriteXMLInput.lower().strip() in ["false", "0"]:
self.__bWriteDataXMLInput = False
else:
self.__bWriteDataXMLInput = True
# __authors__ = ["Olof Svensson", "Jerome Kieffer"] __contact__ = "*****@*****.**" __license__ = "GPLv3" __date__ = "2010-02-02" __copyright__ = "ESRF" # # Set up PYTHON path for the EDNA kernel # # First locate EDNA_HOME # import sys, os.path pyStrProgramPath = os.path.abspath(sys.argv[0]) pyStrBinPath = os.path.split(pyStrProgramPath)[0] pyStrKernelPath = os.path.split(pyStrBinPath)[0] pyStrEdnaHomePath = os.path.split(pyStrKernelPath)[0] os.environ["EDNA_HOME"] = pyStrEdnaHomePath # # Then add kernel/src to PYTHONPATH # sys.path.append(os.path.join(pyStrEdnaHomePath, "kernel", "src")) # # Now the EDApplication can be imported and started # from EDApplication import EDApplication edApplication = EDApplication() edApplication.execute()
def __init__(self, cl, name):
PyTango.Device_3Impl.__init__(self, cl, name)
EDTangoServer.init_device(self)
# Initialise the plugin factory
self.m_edFactoryPlugin = EDApplication.getFactoryPlugin()
EDVerbose.setVerboseDebugOn()
