def Permittivity(self,StrainTensors,ElectricDisplacementx,elem=0,gcounter=0):
mu1 = self.mu1
mu2 = self.mu2
mue = self.mue
lamb = self.lamb
eps_1 = self.eps_1
eps_2 = self.eps_2
eps_e = self.eps_e
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
D = ElectricDisplacementx.reshape(self.ndim,1)
Dx = D.reshape(self.ndim)
DD = np.dot(D.T,D)[0,0]
D0D = np.dot(D,D.T)
if self.ndim==2:
trb = trace(b) + 1
else:
trb = trace(b)
self.dielectric_tensor = J/eps_1*np.linalg.inv(b) + 1./eps_2*I + \
4.*J/eps_e*trb*I + \
8.*J**3/mue/eps_e**2*(D0D + 0.5*DD*I)
# TRANSFORM TENSORS TO THEIR ENTHALPY COUNTERPART
H_Voigt = -np.linalg.inv(self.dielectric_tensor)
return H_Voigt
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
mu1 = self.mu1
mu2 = self.mu2
lamb = self.lamb
eps_1 = self.eps_1
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
D = ElectricDisplacementx.reshape(self.ndim, 1)
if self.ndim == 2:
trb = trace(b) + 1
else:
trb = trace(b)
simga_mech = 2.0*mu1/J*b + \
2.0*mu2/J*(trb*b - np.dot(b,b)) -\
2.0*(mu1+2*mu2)/J*I +\
lamb*(J-1)*I
sigma_electric = J / eps_1 * np.dot(D, D.T)
sigma = simga_mech + sigma_electric
return sigma
def CauchyStress(self,StrainTensors,ElectricDisplacementx,elem=0,gcounter=0):
mu1 = self.mu1
mu2 = self.mu2
mue = self.mue
lamb = self.lamb
eps_2 = self.eps_2
eps_e = self.eps_e
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
D = ElectricDisplacementx.reshape(self.ndim,1)
DD = np.dot(D.T,D)[0,0]
D0D = np.dot(D,D.T)
if self.ndim==2:
trb = trace(b) + 1
else:
trb = trace(b)
sigma_mech = 2.0*mu1/J*b + \
2.0*mu2/J*(trb*b - np.dot(b,b)) -\
2.0*(mu1+2*mu2+6*mue)/J*I +\
lamb*(J-1)*I +\
4.*mue/J*trb*b
sigma_electric = 1./eps_2*(D0D - 0.5*DD*I)
# REGULARISATION TERMS
sigma_reg = 4.*J/eps_e*(DD*b + trb*D0D) + \
4.0*J**3/mue/eps_e**2*DD*D0D
sigma = sigma_mech + sigma_electric + sigma_reg
return sigma
def CauchyStress(self,StrainTensors,ElectricFieldx=None,elem=0,gcounter=0):
kappa = self.kappa
mu = self.mu
k1 = self.k1
k2 = self.k2
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
if self.ndim == 3:
trb = trace(b)
elif self.ndim == 2:
trb = trace(b) + 1
stress = mu*J**(-5./3.)*(b - 1./3.*trb*I)
if self.is_nearly_incompressible:
stress += self.pressure*I
else:
stress += kappa*(J-1.)*I
# Anisotropic contibution
nfibres = self.anisotropic_orientations.shape[1]
for i_fibre in range(nfibres):
N = self.anisotropic_orientations[elem,i_fibre,:,None]
FN = np.dot(F,N)[:,0]
innerFN = einsum('i,i',FN,FN)
outerFN = einsum('i,j',FN,FN)
expo = np.exp(k2*(innerFN-1.)**2)
stress += 2.*k1/J*(innerFN-1.)*expo*outerFN
return stress
def Hessian(self, StrainTensors, ElectricFieldx=None, elem=0, gcounter=0):
"""Hessian split into isochoroic and volumetric parts"""
I = StrainTensors['I']
b = StrainTensors['b'][gcounter]
J = StrainTensors['J'][gcounter]
mu = self.mu
kappa = self.kappa
# ISOCHORIC
H_Voigt = 2*mu*J**(-5./3.)*(1./9.*trace(b)*einsum('ij,kl',I,I) - \
1./3.*(einsum('ij,kl',b,I) + einsum('ij,kl',I,b)) +\
1./6.*trace(b)*(einsum('ik,jl',I,I) + einsum('il,jk',I,I)) )
# VOLUMETRIC CHANGES
if self.is_nearly_incompressible:
H_Voigt += self.pressure * (
einsum('ij,kl', I, I) -
(einsum('ik,jl', I, I) + einsum('il,jk', I, I)))
else:
H_Voigt += kappa * (
(2. * J - 1.) * einsum('ij,kl', I, I) - (J - 1.) *
(einsum('ik,jl', I, I) + einsum('il,jk', I, I)))
H_Voigt = Voigt(H_Voigt, 1)
self.H_VoigtSize = H_Voigt.shape[0]
return H_Voigt
def CauchyStress(self, StrainTensors, ElectricFieldx, elem=0, gcounter=0):
alpha = self.alpha
beta = self.beta
kappa = self.kappa
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
H = J * np.linalg.inv(F).T
g = np.dot(H, H.T)
bcross = trace(b) * b - np.dot(b, b)
# b=np.dot(F,F.T)
# stress = 2.*alpha*J**(-5/3.)*b - 2./3.*alpha*J**(-5/3.)*trace(b)*I + \
# beta*J**(-3)*trace(g)**(3./2.)*I - 3*beta*J**(-3)*trace(g)**(1./2.)*g + \
# +(kappa*(J-1.0))*I #####
if self.ndim == 2:
trb = trace(b) + 1
trg = trace(g) + J**2
elif self.ndim == 3:
trb = trace(b)
trg = trace(g)
stress = 2.*alpha*J**(-5/3.)*b - 2./3.*alpha*J**(-5/3.)*(trb)*I + \
beta*J**(-3)*(trg)**(3./2.)*I - 3*beta*J**(-3)*(trg)**(1./2.)*g + \
+(kappa*(J-1.0))*I
return stress
def CauchyStress(self, StrainTensors, ElectricFieldx, elem=0, gcounter=0):
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
H = J * np.linalg.inv(F).T
N = self.anisotropic_orientations[elem][:, None]
FN = np.dot(F, N)
HN = np.dot(H, N)[:, 0]
innerFN = np.dot(FN.T, FN)[0][0]
innerHN = einsum('i,i', HN, HN)
outerHN = einsum('i,j', HN, HN)
E = self.E
E_A = self.E_A
v = self.nu
gamma = self.gamma
lamb = -(E_A * E * v) / (2. * E * v**2 + E_A * v - E_A)
ut = (E**2 * v**2 + E_A * E * v**2 + E_A * E * v -
E_A * E) / (2 * (v + 1) * (2 * E * v**2 + E_A * v - E_A))
beta = 0.
eta_1 = (E_A**2 * v**2 - E_A**2 - 2 * E_A * E * v**2 + E_A * E +
E**2 * v**2) / (4 * (gamma - 1) * (v + 1) *
(2 * E * v**2 + E_A * v - E_A))
eta_2 = -(E_A**2 * v - E_A**2 + E_A * E - E_A * E * v) / (
4 * (gamma - 1) * (2 * E * v**2 + E_A * v - E_A))
alpha = ut - 4 * gamma * beta - 2 * (1 - gamma) * eta_1 - 2 * (
1 - gamma) * eta_2
alpha = alpha / 2. / gamma
eta = [eta_1, eta_2]
if self.ndim == 3:
trb = trace(b)
elif self.ndim == 2:
trb = trace(b) + 1
stress = 2. * gamma * alpha / J * b + 2. * gamma * beta / J * (
trb * b - np.dot(b, b)) - ut / J * I + lamb * (J - 1.) * I
# n=1
# m=2
# stressNCN_1 = self.CauchyStressNCN(StrainTensors,m,eta,gamma,FN,innerFN,elem,gcounter)
# stressNGN_1 = self.CauchyStressNGN(StrainTensors,n,eta,gamma,innerHN,outerHN,elem,gcounter)
# stress += stressNCN_1
# stress += stressNGN_1
for m in range(2, 4):
stress += self.CauchyStressNCN(StrainTensors, m, eta[m - 2], gamma,
FN, innerFN, elem, gcounter)
stress += self.CauchyStressNGN(StrainTensors, 1., eta_1, gamma,
innerHN, outerHN, elem, gcounter)
stress += self.CauchyStressNGN(StrainTensors, 1., eta_2, gamma,
innerHN, outerHN, elem, gcounter)
# print stress
return stress
def CauchyStress(self,
StrainTensors,
ElectricFieldx=None,
elem=0,
gcounter=0):
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
strain = StrainTensors['strain'][gcounter]
# mu = self.mu
# lamb = self.lamb
# return 1.0*mu/J*b + (lamb*(J-1.0)-mu/J)*I
mu = self.mu
lamb = self.lamb
# Jb = 1.27168554933
Jb = self.Jbar[elem]
# CHECK IF THIS IS NECESSARY
if self.ndim == 3:
tre = trace(strain)
elif self.ndim == 2:
tre = trace(strain) + 1
sigma_linear = 2. * mu * strain + lamb * tre * I
simga_nonlinear = 1.0 * mu / J * b + (lamb * (J - Jb) - mu / J) * I
alp = 0.1
# simga = (1-alp)*simga_nonlinear + alp*sigma_linear
simga = simga_nonlinear
return simga
def Hessian(self,StrainTensors,ElectricDisplacementx,elem=0,gcounter=0):
mu1 = self.mu1
mu2 = self.mu2
mue = self.mue
lamb = self.lamb
eps_1 = self.eps_1
eps_2 = self.eps_2
eps_e = self.eps_e
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
D = ElectricDisplacementx.reshape(self.ndim,1)
Dx = D.reshape(self.ndim)
DD = np.dot(D.T,D)[0,0]
D0D = np.dot(D,D.T)
if self.ndim==2:
trb = trace(b) + 1
else:
trb = trace(b)
C_mech = 2.*mu2/J*(2*einsum('ij,kl',b,b) - einsum('ik,jl',b,b) - einsum('il,jk',b,b)) +\
2.*(mu1+2.*mu2+6*mue)/J*( einsum("ik,jl",I,I)+einsum("il,jk",I,I) ) + \
lamb*(2.*J-1.)*einsum("ij,kl",I,I) - lamb*(J-1)*( einsum("ik,jl",I,I)+einsum("il,jk",I,I) ) +\
8.*mue/J*einsum('ij,kl',b,b)
C_elect = 1./eps_2*(0.5*DD*(einsum('ik,jl',I,I) + einsum('il,jk',I,I) + einsum('ij,kl',I,I) ) - \
einsum('ij,k,l',I,Dx,Dx) - einsum('i,j,kl',Dx,Dx,I))
# REGULARISATION TERMS
C_reg = 8.*J/eps_e*( einsum('ij,k,l',b,Dx,Dx) + einsum('i,j,kl',Dx,Dx,b) ) + \
8.*J**3/mue/eps_e**2*einsum('i,j,k,l',Dx,Dx,Dx,Dx)
self.elasticity_tensor = C_mech + C_elect + C_reg
self.coupling_tensor = 1./eps_2*(einsum('ik,j',I,Dx) + einsum('i,jk',Dx,I) - einsum('ij,k',I,Dx)) + \
8*J/eps_e*einsum('ij,k',b,Dx) + 4*J/eps_e*trb*( einsum('ik,j',I,Dx) + einsum('i,jk',Dx,I) ) +\
4.*J**3/mue/eps_e**2*DD* ( einsum('ik,j',I,Dx) + einsum('i,jk',Dx,I) ) + 8.*J**3/mue/eps_e**2*einsum('i,j,k',Dx,Dx,Dx)
self.dielectric_tensor = J/eps_1*np.linalg.inv(b) + 1./eps_2*I + \
4.*J/eps_e*trb*I + \
8.*J**3/mue/eps_e**2*(D0D + 0.5*DD*I)
# TRANSFORM TENSORS TO THEIR ENTHALPY COUNTERPART
E_Voigt, P_Voigt, C_Voigt = self.legendre_transform.InternalEnergyToEnthalpy(self.dielectric_tensor,
self.coupling_tensor, self.elasticity_tensor)
# BUILD HESSIAN
factor = -1.
H1 = np.concatenate((C_Voigt,factor*P_Voigt),axis=1)
H2 = np.concatenate((factor*P_Voigt.T,E_Voigt),axis=1)
H_Voigt = np.concatenate((H1,H2),axis=0)
return H_Voigt
def InternalEnergy(self,StrainTensors,ElectricFieldx,elem=0,gcounter=0):
mu = self.mu
lamb = self.lamb
strain = StrainTensors['strain'][gcounter]
if self.ndim == 3:
tre = trace(strain)
elif self.ndim == 2:
tre = trace(strain) + 1
energy = lamb/2.*tre**2 + mu*np.einsum("ij,ij",strain,strain)
return energy
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
mu = self.mu
lamb = self.lamb
d = self.ndim
I = StrainTensors['I']
F = StrainTensors['F'][gcounter]
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
u, s, vh = svd(F, full_matrices=True)
vh = vh.T
R = u.dot(vh.T)
S = np.dot(vh, np.dot(np.diag(s), vh.T))
J2 = J**2
J3 = J**3
I1 = trace(S)
I2 = trace(b)
if self.ndim == 2:
sigma = 2. * (1. + 1. / J2) * F - 2. * (1. + 1. / J) * R + (
2. / J2) * (I1 - I2 / J) * dJdF(F)
else:
djdf = dJdF(F)
C = np.dot(F.T, F)
IC = trace(C)
IIC = trace(C.dot(C))
IIStarC = 0.5 * (IC * IC - IIC)
IS = trace(S)
# IIS = trace(S.dot(S));
IIS = I2
IIStarS = 0.5 * (IS * IS - IIS)
# % here's symmetric dirichlet
dIIStarC = 2 * IC * F - 2. * b.dot(F)
P = 2 * F + dIIStarC / J2 - (2. / J3) * IIStarC * djdf
P = P - 2 * ((1 + IS / J) * R - (IIStarS / J2) * djdf -
(1. / J) * F)
P = P / 2.
sigma = P
makezero(sigma, 1e-12)
# print(sigma)
return sigma
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
mu1 = self.mu1s[elem]
mu2 = self.mu2s[elem]
mu3 = self.mu3s[elem]
lamb = self.lambs[elem]
eps_1 = self.eps_1s[elem]
eps_2 = self.eps_2s[elem]
eps_3 = self.eps_3s[elem]
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
H = J * np.linalg.inv(F).T
N = self.anisotropic_orientations[elem][:, None]
FN = np.dot(F, N)[:, 0]
HN = np.dot(H, N)[:, 0]
outerFN = einsum('i,j', FN, FN)
innerHN = einsum('i,i', HN, HN)
outerHN = einsum('i,j', HN, HN)
D = ElectricDisplacementx.reshape(self.ndim, 1)
Dx = D.reshape(self.ndim)
DD = np.dot(D.T, D)[0, 0]
D0D = np.dot(D, D.T)
if self.ndim == 3:
trb = trace(b)
elif self.ndim == 2:
trb = trace(b) + 1.
sigma_mech = 2.*mu1/J*b + \
2.*mu2/J*(trb*b - np.dot(b,b)) - \
2.*(mu1+2*mu2+mu3)/J*I + \
lamb*(J-1)*I +\
2*mu3/J*outerFN +\
2*mu3/J*innerHN*I - 2*mu3/J*outerHN
sigma_electric = 1./eps_2*(D0D - 0.5*DD*I) +\
2.*J*sqrt(mu3/eps_3)*D0D + 2*sqrt(mu3/eps_3)*(einsum('i,j',Dx,FN) + einsum('i,j',FN,Dx))
sigma = sigma_mech + sigma_electric
return sigma
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
mu = self.mu
mu1 = self.mu1
mu2 = self.mu2
lamb = self.lamb
d = self.ndim
I = StrainTensors['I']
F = StrainTensors['F'][gcounter]
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
trb = trace(b) + 0
sigma = 2. / d * J**(-2. / d - 1.) * (-1. / d * trb * I + b)
sigma *= (1. / d * J**(-2 / d) * trb - 1)
sigma = mu * sigma
sigma += 2.0*mu1/J*b + \
2.0*mu2/J*(trb*b - np.dot(b,b)) -\
2.0*(mu1+2*mu2)/J*I +\
lamb*(J-1)*I
return sigma
def CauchyStress(self,
StrainTensors,
ElectricFieldx=None,
elem=0,
gcounter=0):
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
C = np.dot(F.T, F)
if np.isclose(J, 0) or J < 0:
delta = np.sqrt(0.04 * J * J + 1e-8)
J = 0.5 * (J + np.sqrt(J**2 + 4 * delta**2))
mu = self.mu
lamb = self.lamb
E = 0.5 * (C - I)
stress = lamb * trace(E) * I + 2. * mu * E
stress = 1. / J * np.dot(F, np.dot(stress, F.T))
# buggy
# stress = mu/J*np.dot((b - I),b) + lamb/2./J * trace(b - I)*I
return stress
def Hessian(self, StrainTensors, ElectricFieldx=0, elem=0, gcounter=0):
"""Hessian split into isochoroic and volumetric parts"""
I = StrainTensors['I']
b = StrainTensors['b'][gcounter]
J = StrainTensors['J'][gcounter]
if np.isclose(J, 0) or J < 0:
delta = np.sqrt(0.04 * J * J + 1e-8)
# J = 0.5 * (J + np.sqrt(J**2 + 4 *delta**2))
mu = self.mu
trb = trace(b)
if self.ndim == 2:
trb += 1.
# ISOCHORIC
H_Voigt = 2*mu*J**(-5./3.)*(1./9.*trb*einsum('ij,kl',I,I) - \
1./3.*(einsum('ij,kl',b,I) + einsum('ij,kl',I,b)) +\
1./6.*trb*(einsum('ik,jl',I,I) + einsum('il,jk',I,I)) )
# VOLUMETRIC
# H_Voigt += self.pressure[elem]*(einsum('ij,kl',I,I) - (einsum('ik,jl',I,I) + einsum('il,jk',I,I)))
H_Voigt += self.lamb * (2 * J - 1) * einsum(
'ij,kl', I, I) - self.lamb * (J - 1) * (einsum('ik,jl', I, I) +
einsum('il,jk', I, I))
H_Voigt = Voigt(H_Voigt, 1)
self.H_VoigtSize = H_Voigt.shape[0]
return H_Voigt
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
d = self.ndim
I = StrainTensors['I']
F = StrainTensors['F'][gcounter]
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
if np.isclose(J, 0) or J < 0:
delta = np.sqrt(0.04 * J * J + 1e-8)
# J = 0.5 * (J + np.sqrt(J**2 + 4 *delta**2))
# J = 1.
trb = trace(b) + 0
sigma = 2. / d * J**(-2. / d - 1.) * (-1. / d * trb * I + b)
# sigma *= np.exp(1./d * J**(-2./d) * trb - 1)
# print(F)
# exit()
return sigma
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
mu = self.mu
lamb = self.lamb
d = self.ndim
I = StrainTensors['I']
F = StrainTensors['F'][gcounter]
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
u, s, vh = svd(F, full_matrices=True)
vh = vh.T
R = u.dot(vh.T)
S = np.dot(vh, np.dot(np.diag(s), vh.T))
IS = trace(S)
sigma = 2. * (F - R) + (IS - self.ndim) * R
# sigma = 2. * mu * (F - R) + 1 * lamb * (IS - 2) * R
# print(sigma)
# exit()
return sigma
def Hessian(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
d = self.ndim
I = StrainTensors['I']
F = StrainTensors['F'][gcounter]
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
if np.isclose(J, 0) or J < 0:
delta = np.sqrt(0.04 * J * J + 1e-8)
# J = 0.5 * (J + np.sqrt(J**2 + 4 *delta**2))
# J = 1.
trb = trace(b) + 0
C_Voigt = 4./d * J**(-1) * einsum("ij,kl", (-1./d * trb * I + b), (-1./d) * J**(-2./d) * I ) +\
4./d**2 * J**(-1) * J**(-2./d) * (-einsum("ij,kl", I, b) + 0.5 * trb * (einsum("ik,jl",I,I)+einsum("il,jk",I,I)) )
# factor = np.exp(1./d * J**(-2./d) * trb - 1.)
# sigma = 2./d * J**(-2./d - 1.) * (-1./d * trb * I + b)
# C_Voigt = factor * (np.einsum("ij,kl", sigma, sigma) + C_Voigt)
C_Voigt = Voigt(C_Voigt, 1)
# s = np.linalg.svd(C_Voigt)[1]
# if np.any(s < 0):
# print(s)
return C_Voigt
def InternalEnergy(self, StrainTensors, elem=0, gcounter=0):
J = StrainTensors['J'][gcounter]
F = StrainTensors['F'][gcounter]
trc = trace(F.T.dot(F))
# self.delta = np.sqrt(1e-8 + min(self.minJ, 0.)**2 * 0.04)
d = self.ndim
delta = self.delta
Jr = 0.5 * (J + np.sqrt(J**2 + delta**2))
if np.isclose(Jr, 0):
Jr = 1e-10
energy = (1. / d * Jr**(-2. / d) * trc - 1.)
# Neffs
# energy += 0.02*(Jr**5 + 1./Jr**5 - 2.)
# Garanzha
# energy += (0.5*Jr - 1.0 + 0.5/Jr) * self.lamb
# standard
# energy += self.lamb * 0.5 * (Jr - 1.)**2
energy += self.lamb * LocallyInjectiveFunction(Jr)
return energy
def CauchyStress(self,
StrainTensors,
ElectricDisplacementx,
elem=0,
gcounter=0):
mu1 = self.mu1
mu2 = self.mu2
lamb = self.lamb
eps_2 = self.eps_2
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
D = ElectricDisplacementx.reshape(self.ndim, 1)
DD = np.dot(D.T, D)[0, 0]
trb = trace(b)
if self.ndim == 2:
trb += 1.
simga_mech = 2.0*mu1/J*b + \
2.0*mu2/J*(trb*b - np.dot(b,b)) -\
2.0*(mu1+2*mu2)/J*I +\
lamb*(J-1.)*I
sigma_electric = 1. / eps_2 * (np.dot(D, D.T) - 0.5 * DD * I)
sigma = simga_mech + sigma_electric
return sigma
def CauchyStress(self,StrainTensors,ElectricFieldx,elem=0,gcounter=0):
mu = self.mu
lamb = self.lamb
eta = self.eta
piezoelectric_tensor = self.P
flexoelectric_tensor = self.f
I = StrainTensors['I']
e = StrainTensors['strain'][gcounter]
E = ElectricFieldx.reshape(self.ndim,1)
tre = trace(e)
if self.ndim==2:
tre +=1.
# REQUIRES CHECKS
if self.ndim == 3:
sigma_f = np.dot(flexoelectric_tensor,E)
sigma_f = np.array([
[0.,-sigma_f[2],sigma_f[1]],
[sigma_f[2],0.,-sigma_f[0]],
[-sigma_f[1],sigma_f[0],0.],
])
else:
# THIRD COMPONENT WHICH DOES NOT EXITS?
sigma_f = np.zeros((self.ndim,self.ndim))
sigma = lamb*tre*I + 2.0*mu*e - UnVoigt(np.dot(piezoelectric_tensor,E)) + sigma_f
return sigma
def CauchyStress(self, StrainTensors, ElectricFieldx, elem=0, gcounter=0):
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
H = J * np.linalg.inv(F).T
# N = np.array([-1.,0.]).reshape(2,1)
N = self.anisotropic_orientations[elem, :, None]
FN = np.dot(F, N)
# HN = np.dot(H,N)[:,0]
innerFN = np.dot(FN.T, FN)[0][0]
outerFN = np.dot(FN, FN.T)
# innerFN = einsum('i,i',FN,FN)
# outerFN = einsum('i,j',FN,FN)
bFN = np.dot(b, FN)
E = self.E
E_A = self.E_A
G_A = self.G_A
v = self.nu
mu = self.mu
alpha = E / 8.0 / (1. + v)
beta = E / 8.0 / (1. + v)
eta_1 = 4. * alpha - G_A
lamb = -(3 * E) / (2 * (v + 1)) - (E * (-E * v**2 + E_A)) / (
(v + 1) * (2 * E * v**2 + E_A * v - E_A))
eta_2 = E/(4*(v + 1)) - (E_A*E*v)/(4*(2*E*v**2 + E_A*v - E_A)) + \
(E*(- E*v**2 + E_A))/(4*(v + 1)*(2*E*v**2 + E_A*v - E_A))
gamma = (E_A**2*(v - 1))/(8*(2*E*v**2 + E_A*v - E_A)) - G_A/2 + \
(E_A*E*v)/(4*(2*E*v**2 + E_A*v - E_A)) - \
(E*(- E*v**2 + E_A))/(8*(v + 1)*(2*E*v**2 + E_A*v - E_A))
ut = 2 * alpha + 4 * beta
if self.ndim == 3:
trb = trace(b)
elif self.ndim == 2:
trb = trace(b) + 1
stress = 2.*alpha/J*b + 2.*beta/J*(trb*b - np.dot(b,b)) - ut/J*I + lamb*(J-1.)*I + \
2.*eta_1/J*outerFN + 2.*eta_2/J*(innerFN-1.)*b + 2.*eta_2/J*(trb-3.)*outerFN + \
4.*gamma/J*(innerFN-1.)*outerFN - eta_1/J *(np.dot(bFN,FN.T)+np.dot(FN,bFN.T))
return stress
def Hessian(self, StrainTensors, ElectricFieldx=0, elem=0, gcounter=0):
alpha = self.alpha
beta = self.beta
kappa = self.kappa
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
# b=np.dot(F,F.T)
H = J * np.linalg.inv(F).T
g = np.dot(H, H.T)
if self.ndim == 2:
trb = trace(b) + 1
trg = trace(g) + J**2
elif self.ndim == 3:
trb = trace(b)
trg = trace(g)
H_Voigt = -4/3.*alpha*J**(-5/3.)*( einsum('ij,kl',b,I) + einsum('ij,kl',I,b) ) + \
4.*alpha/9.*J**(-5/3.)*trb*einsum('ij,kl',I,I) + \
2/3.*alpha*J**(-5/3.)*trb*( einsum('il,jk',I,I) + einsum('ik,jl',I,I) ) + \
beta*J**(-3)*trg**(3./2.)* ( einsum('ij,kl',I,I) - einsum('ik,jl',I,I) - einsum('il,jk',I,I) ) - \
3.*beta*J**(-3)*trg**(1./2.)*( einsum('ij,kl',I,g) + einsum('ij,kl',g,I) ) + \
6.*beta*J**(-3)*trg**(1./2.)*( einsum('ik,jl',I,g) + einsum('il,jk',g,I) ) + \
3.*beta*J**(-3)*trg**(-1./2.)*( einsum('ij,kl',g,g) ) + \
kappa*(2.0*J-1)*einsum('ij,kl',I,I) - kappa*(J-1)*(einsum('ik,jl',I,I)+einsum('il,jk',I,I)) # #
# # WITH PRE-COMPUTED IDENTITY TENSORS
# H_Voigt = -4/3.*alpha*J**(-5/3.)*( einsum('ij,kl',b,I) + einsum('ij,kl',I,b) ) + \
# 4.*alpha/9.*J**(-5/3.)*trb*self.Iijkl + \
# 2/3.*alpha*J**(-5/3.)*trb*self.Iikjl + \
# beta*J**(-3)*trg**(3./2.)*( self.Iijkl - self.Iikjl ) - \
# 3.*beta*J**(-3)*trg**(1./2.)*( einsum('ij,kl',I,g) + einsum('ij,kl',g,I) ) + \
# 6.*beta*J**(-3)*trg**(1./2.)*( einsum('ik,jl',I,g) + einsum('il,jk',g,I) ) + \
# 3.*beta*J**(-3)*trg**(-1./2.)*( einsum('ij,kl',g,g) ) + \
# kappa*(2.0*J-1)*self.Iijkl - kappa*(J-1)*self.Iikjl
H_Voigt = Voigt(H_Voigt, 1)
self.H_VoigtSize = H_Voigt.shape[0]
return H_Voigt
def CauchyStress(self,StrainTensors,ElectricFieldx,elem=0,gcounter=0):
lamb = self.lamb
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
if self.ndim == 3:
trb = trace(b)
elif self.ndim == 2:
trb = trace(b) + 1
# stress = 2.0*alpha/J*b+2.0*beta/J*(trace(b)*b - np.dot(b,b)) + (lamb*(J-1.0)-4.0*beta-2.0*alpha/J)*I
stress = 2.0*self.alpha/J*b+2.0*self.beta/J*(trb*b - np.dot(b,b)) + (lamb*(J-1.0)-4.0*self.beta-2.0*self.alpha/J)*I
# print stress
return stress
def CauchyStress(self, StrainTensors, ElectricFieldx, elem=0, gcounter=0):
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
mu = self.mu
stress = mu * J**(-5. / 3.) * (b - 1. / 3. * trace(b) * I)
stress += self.pressure[elem] * I
return stress
def Hessian(self, StrainTensors, ElectricFieldx=0, elem=0, gcounter=0):
"""Hessian split into isochoroic and volumetric parts"""
I = StrainTensors['I']
b = StrainTensors['b'][gcounter]
J = StrainTensors['J'][gcounter]
mu = self.mu
# ISOCHORIC
H_Voigt = 2*mu*J**(-5./3.)*(1./9.*trace(b)*einsum('ij,kl',I,I) - \
1./3.*(einsum('ij,kl',b,I) + einsum('ij,kl',I,b)) +\
1./6.*trace(b)*(einsum('ik,jl',I,I) + einsum('il,jk',I,I)) )
# VOLUMETRIC
H_Voigt += self.pressure[elem]*(einsum('ij,kl',I,I) - (einsum('ik,jl',I,I) + einsum('il,jk',I,I)))
H_Voigt = Voigt(H_Voigt,1)
self.H_VoigtSize = H_Voigt.shape[0]
return H_Voigt
def CauchyStress(self, StrainTensors, ElectricFieldx, elem=0, gcounter=0):
strain = StrainTensors['strain'][gcounter]
I = StrainTensors['I']
mu = self.mu
lamb = self.lamb
tre = trace(strain)
if self.ndim == 2:
tre += 1.
return 2 * mu * strain + lamb * tre * I
def Hessian(self,StrainTensors,ElectricFieldx=None,elem=0,gcounter=0):
kappa = self.kappa
mu = self.mu
k1 = self.k1
k2 = self.k2
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
F = StrainTensors['F'][gcounter]
if self.ndim == 3:
trb = trace(b)
elif self.ndim == 2:
trb = trace(b) + 1
H_Voigt = 2.*mu*J**(-5./3.) * (1./9.*trb*einsum('ij,kl',I,I) - \
1./3.*einsum('ij,kl',I,b) - 1./3.*einsum('ij,kl',b,I) + \
1./6.*trb*(einsum('il,jk',I,I) + einsum('ik,jl',I,I)) )
if self.is_nearly_incompressible:
H_Voigt += self.pressure*(einsum('ij,kl',I,I) - (einsum('ik,jl',I,I) + einsum('il,jk',I,I)))
else:
H_Voigt += kappa*((2.*J-1.)*einsum('ij,kl',I,I) - (J-1.)*(einsum('ik,jl',I,I) + einsum('il,jk',I,I)))
# Anisotropic contibution
nfibres = self.anisotropic_orientations.shape[1]
for i_fibre in range(nfibres):
N = self.anisotropic_orientations[elem,i_fibre,:,None]
FN = np.dot(F,N)[:,0]
innerFN = einsum('i,i',FN,FN)
outerFN = einsum('i,j',FN,FN)
expo = np.exp(k2*(innerFN-1.)**2)
H_Voigt += 4.*k1/J*(1.+2.*k2*(innerFN-1.)**2)*expo*einsum('ij,kl',outerFN,outerFN)
H_Voigt = Voigt(H_Voigt ,1)
return H_Voigt
def CauchyStress(self,StrainTensors,ElectricDisplacementx,elem=0,gcounter=0):
mu_v = self.mu_v
mu1 = self.mu1
mu2 = self.mu2
lamb = self.lamb
eps_2 = self.eps_2
I = StrainTensors['I']
J = StrainTensors['J'][gcounter]
b = StrainTensors['b'][gcounter]
strain = StrainTensors['strain'][gcounter]
D = ElectricDisplacementx.reshape(self.ndim,1)
DD = np.dot(D.T,D)[0,0]
trb = trace(b)
if self.ndim==2:
trb += 1.
simga_mech = 2.0*mu1/J*b + \
2.0*mu2/J*(trb*b - np.dot(b,b)) -\
2.0*(mu1+2*mu2)/J*I +\
lamb*(J-1.)*I
sigma_electric = 1./eps_2*(np.dot(D,D.T) - 0.5*DD*I)
# CHECK IF THIS IS NECESSARY
if self.ndim == 3:
tre = trace(strain)
elif self.ndim == 2:
tre = trace(strain) + 1
# USE FASTER TRACE FUNCTION
sigma_linear = 2.*mu_v*strain + lamb*tre*I
sigma = simga_mech + sigma_electric + sigma_linear
return sigma
def CauchyStress(self,StrainTensors,ElectricFieldx,elem=0,gcounter=0):
mu = self.mu
lamb = self.lamb
eta = self.eta
piezoelectric_tensor = self.P
flexoelectric_tensor = self.f
I = StrainTensors['I']
e = StrainTensors['strain'][gcounter]
E = ElectricFieldx.reshape(self.ndim,1)
tre = trace(e)
if self.ndim==2:
tre +=1.
