def createPackedOutputSandbox(output_patterns, filter, dest_dir): """Get all files matching output patterns except filtered with filter and put them to the Sandbox tarball in destination directory. This function is called by wrapper script at the run time. Arguments: 'output_patterns': list of filenames or patterns. 'filter': function to filter files (return True to except) 'dest_dir': destination directory for tarball """ tgzfile = os.path.join(dest_dir, OUTPUT_TARBALL_NAME) try: from Ganga.Utility.files import multi_glob, recursive_copy except IOError as e: import sys print("Failed to import files") print("sys:") print(sys.path) print("env:") print(os.environ) print("ls:") print(os.listdir(".")) print("pattern:") print(output_patterns) print("destdir:") print(dest_dir) try: import traceback traceback.print_stack() except: pass print("Trying fix") sys.path.insert(0, os.path.join(os.getcwd(), PYTHON_DIR)) try: from Ganga.Utility.files import multi_glob, recursive_copy print("Success!") except IOError as e: print("Fail!") raise e outputlist = multi_glob(output_patterns, filter) if outputlist: with closing(tarfile.open(tgzfile, "w:gz")) as tf: tf.dereference = True for f in outputlist: tf.add(f)
def createOutputSandbox(output_patterns, filter, dest_dir): """Get all files matching output patterns except filtered with filter and write them to the destination directory. This function is called by wrapper script at the run time. Arguments: 'output_patterns': list of filenames or patterns. 'filter': function to filter files (return True to except) 'dest_dir': destination directory for output files """ try: from Ganga.Utility.files import multi_glob, recursive_copy except IOError as e: import sys print("Failed to import files") print("sys:") print(sys.path) print("env:") print(os.environ) print("ls:") print(os.listdir(".")) print("pattern:") print(output_patterns) print("destdir:") print(dest_dir) try: import traceback traceback.print_stack() except: pass print("Trying fix") sys.path.insert(0, os.path.join(os.getcwd(), PYTHON_DIR)) try: from Ganga.Utility.files import multi_glob, recursive_copy print("Success!") except IOError as e: print("Fail!") raise e for f in multi_glob(output_patterns, filter): try: if not os.path.exists(dest_dir): os.makedirs(dest_dir) recursive_copy(f, dest_dir) except Exception as x: print("ERROR: (job ###JOBID### createOutput )", x)
def createOutputSandbox(output_patterns,filter,dest_dir): """Get all files matching output patterns except filtered with filter and write them to the destination directory. This function is called by wrapper script at the run time. Arguments: 'output_patterns': list of filenames or patterns. 'filter': function to filter files (return True to except) 'dest_dir': destination directory for output files """ from Ganga.Utility.files import multi_glob,recursive_copy for f in multi_glob(output_patterns,filter): try: recursive_copy(f,dest_dir) except Exception,x: print "ERROR: (job ###JOBID### createOutput )",x
def _getmatches(self, patterns): """Return a list of paths matching the list of path patterns. Keyword arguments: patterns -- A list of path patterns, identifying exported job files. Relative paths are evaluated against the current working directory and against the Ganga python root, i.e. ganga/python/. Duplicate matches are removed (based on absolute file name). """ # expand patterns patterns = [files.expandfilename(p) for p in patterns] # add local patterns absolute or relative to cwd cwd = os.getcwd() localpatterns = [os.path.join(cwd, p) for p in patterns] # add local patterns absolute or relative to Ganga python root gangapythonroot = config['System']['GANGA_PYTHONPATH'] syspatterns = [os.path.join(gangapythonroot, p) for p in patterns] # find all matches removing duplicates matches = files.multi_glob(localpatterns + syspatterns) return matches
def createPackedOutputSandbox(output_patterns,filter,dest_dir): """Get all files matching output patterns except filtered with filter and put them to the Sandbox tarball in destination directory. This function is called by wrapper script at the run time. Arguments: 'output_patterns': list of filenames or patterns. 'filter': function to filter files (return True to except) 'dest_dir': destination directory for tarball """ tgzfile = os.path.join(dest_dir,OUTPUT_TARBALL_NAME) from Ganga.Utility.files import multi_glob,recursive_copy outputlist = multi_glob(output_patterns,filter) # ## Curent release with os module # if len(outputlist) > 0: if os.system("tar czf %s %s"%(tgzfile," ".join(outputlist))) != 0: print "ERROR: (job ###JOBID### createPackedOutput ) can't creat tarball"