def __init__(self,**kw):
if 'prefetch' not in kw:
kw['prefetch'] = True
kw['iniFile'] = os.path.join(os.path.dirname(os.path.realpath(__file__)),"glycomotif.ini")
super(GlycoMotifTS,self).__init__(**kw)
for k in self.keys():
if k != 'query_motifs':
continue
self.modify_method(k,partitioner())
if self._prefetch:
self.modify_method(k,prefetcher(usecache=False))
def __init__(self, **kw):
if 'usecache' not in kw:
kw['usecache'] = True
if 'prefetch' not in kw:
kw['prefetch'] = True
if 'cachemode' not in kw:
kw['cachemode'] = 'c'
super(GlyCosmosTS, self).__init__(**kw)
for k in self.keys():
if 'hash' in self[k]:
self.modify_method(
k,
partitioner(kwarg="hash",
fmt="%%0%dx.*",
values='hexidecimal'))
elif 'accession' in self[k]:
self.modify_method(k, partitioner())
if self._prefetch:
if 'hash' in self[k]:
self.modify_method(
k, prefetcher("hash", usecache=self._usecache))
elif 'accession' in self[k]:
self.modify_method(k, prefetcher(usecache=self._usecache))
def __init__(self, **kw):
if 'usecache' not in kw:
kw['usecache'] = True
if 'prefetch' not in kw:
kw['prefetch'] = True
if 'cachemode' not in kw:
kw['cachemode'] = 'c'
super(GlyTouCanTS, self).__init__(**kw)
for k in self.keys():
if k == "query_hashedseq":
self.modify_method(
k,
partitioner(kwarg="hash",
fmt="%%0%dx.*",
values='hexidecimal'))
else:
self.modify_method(k, partitioner())
if self._prefetch:
if k == "query_hashedseq":
self.modify_method(
k, prefetcher("hash", usecache=self._usecache))
else:
self.modify_method(k, prefetcher(usecache=self._usecache))