def test_grid(): gmPersonSearch.ask_for_patient() app = wx.PyWidgetTester(size = (500, 300)) # lab_grid = cMeasurementsGrid(app.frame, -1) # lab_grid.patient = pat app.frame.Show() app.MainLoop()
def run_monitor():
print("starting up backend notifications monitor")
def monitoring_callback(*args, **kwargs):
try:
kwargs['originated_in_database']
print('==> got notification from database "%s":' % kwargs['signal'])
except KeyError:
print('==> received signal from client: "%s"' % kwargs['signal'])
del kwargs['signal']
for key in kwargs.keys():
print(' [%s]: %s' % (key, kwargs[key]))
gmDispatcher.connect(receiver = monitoring_callback)
listener = gmBackendListener(conn = gmPG2.get_raw_connection())
print("listening for the following notifications:")
print("1) unspecific:")
for sig in listener.unspecific_notifications:
print(' - %s' % sig)
while True:
pat = gmPersonSearch.ask_for_patient()
if pat is None:
break
print("found patient", pat)
gmPerson.set_active_patient(patient=pat)
print("now waiting for notifications, hit <ENTER> to select another patient")
raw_input()
print("cleanup")
listener.shutdown()
print("shutting down backend notifications monitor")
def run_monitor():
print("starting up backend notifications monitor")
def monitoring_callback(*args, **kwargs):
try:
kwargs['originated_in_database']
print('==> got notification from database "%s":' % kwargs['signal'])
except KeyError:
print('==> received signal from client: "%s"' % kwargs['signal'])
del kwargs['signal']
for key in kwargs.keys():
print(' [%s]: %s' % (key, kwargs[key]))
gmDispatcher.connect(receiver = monitoring_callback)
listener = gmBackendListener(conn = gmPG2.get_raw_connection())
print("listening for the following notifications:")
print("1) unspecific:")
for sig in listener.unspecific_notifications:
print(' - %s' % sig)
while True:
pat = gmPersonSearch.ask_for_patient()
if pat is None:
break
print("found patient", pat)
gmPerson.set_active_patient(patient=pat)
print("now waiting for notifications, hit <ENTER> to select another patient")
raw_input()
print("cleanup")
listener.shutdown()
print("shutting down backend notifications monitor")
def test_person_comms_pnl(): pat = gmPersonSearch.ask_for_patient() app = wx.PyWidgetTester(size = (600, 400)) widget = cCommChannelsManagerPnl(app.frame, -1) widget.identity = pat app.frame.Show(True) app.MainLoop()
def test_person_comms_pnl():
pat = gmPersonSearch.ask_for_patient()
app = wx.PyWidgetTester(size=(600, 400))
widget = cCommChannelsManagerPnl(app.frame, -1)
widget.identity = pat
app.frame.Show(True)
app.MainLoop()
def test_test_ea_pnl(): pat = gmPersonSearch.ask_for_patient() gmPatSearchWidgets.set_active_patient(patient=pat) app = wx.PyWidgetTester(size = (500, 300)) # ea = cMeasurementEditAreaPnl(app.frame, -1) app.frame.Show() app.MainLoop()
def test_select_narrative_from_episodes():
pat = gmPersonSearch.ask_for_patient()
set_active_patient(patient = pat)
app = wx.PyWidgetTester(size = (200, 200))
sels = select_narrative_from_episodes_new()
print("selected:")
for sel in sels:
print(sel)
def test_select_narrative():
pat = gmPersonSearch.ask_for_patient()
set_active_patient(patient=pat)
app = wx.PyWidgetTester(size=(200, 200))
sels = select_narrative(parent=None, soap_cats=None)
print("selected:")
for sel in sels:
print(sel)
def test_select_narrative():
pat = gmPersonSearch.ask_for_patient()
set_active_patient(patient = pat)
app = wx.PyWidgetTester(size = (200, 200))
sels = select_narrative(parent=None, soap_cats = None)
print("selected:")
for sel in sels:
print(sel)
def test_select_narrative_from_episodes():
pat = gmPersonSearch.ask_for_patient()
set_active_patient(patient=pat)
app = wx.PyWidgetTester(size=(200, 200))
sels = select_narrative_from_episodes_new()
print("selected:")
for sel in sels:
print(sel)
def test_cSoapPluginPnl():
patient = gmPersonSearch.ask_for_patient()
if patient is None:
print("No patient. Exiting gracefully...")
return
set_active_patient(patient=patient)
application = wx.PyWidgetTester(size=(800,500))
soap_input = cSoapPluginPnl(application.frame, -1)
application.frame.Show(True)
soap_input._schedule_data_reget()
application.MainLoop()
def test_cSoapPluginPnl():
patient = gmPersonSearch.ask_for_patient()
if patient is None:
print("No patient. Exiting gracefully...")
return
set_active_patient(patient=patient)
application = wx.PyWidgetTester(size=(800,500))
soap_input = cSoapPluginPnl(application.frame, -1)
application.frame.Show(True)
soap_input._schedule_data_reget()
application.MainLoop()
#======================================================================
# main
#----------------------------------------------------------------------
if __name__ == "__main__":
# 3rd party
import wx
# GNUmed
from Gnumed.business import gmPersonSearch
_log.info("starting Notebooked progress notes input plugin...")
# obtain patient
patient = gmPersonSearch.ask_for_patient()
if patient is None:
print("None patient. Exiting gracefully...")
sys.exit(0)
gmPatSearchWidgets.set_active_patient(patient=patient)
# display standalone multisash progress notes input
application = wx.wx.PyWidgetTester(size=(800, 600))
multisash_notes = gmSOAPWidgets.cNotebookedProgressNoteInputPanel(
application.frame, -1)
application.frame.Show(True)
application.MainLoop()
# clean up
if patient is not None:
def run_tool():
tool = _cfg.get(option='--tool', source_order=[('cli', 'return')])
if tool is None:
# not running a tool
return None
if tool not in _known_tools:
_log.error('unknown tool requested: %s', tool)
print('GNUmed startup: Unknown tool [%s] requested.' % tool)
print('GNUmed startup: Known tools: %s' % _known_tools)
return -1
print('')
print('==============================================')
print('Running tool: %s' % tool)
print('----------------------------------------------')
print('')
if tool == 'check_enc_epi_xref':
from Gnumed.business import gmEMRStructItems
return gmEMRStructItems.check_fk_encounter_fk_episode_x_ref()
if tool == 'export_pat_emr_structure':
# setup praxis
from Gnumed.business import gmPraxis
praxis = gmPraxis.gmCurrentPraxisBranch(
branch=gmPraxis.get_praxis_branches()[0])
# get patient
from Gnumed.business import gmPersonSearch
pat = gmPersonSearch.ask_for_patient()
# setup exporters
from Gnumed.business import gmEMRStructItems
from Gnumed.exporters import gmTimelineExporter
from Gnumed.exporters import gmPatientExporter
while pat is not None:
print('patient:', pat['description_gender'])
# as EMR structure
fname = os.path.expanduser('~/gnumed/gm-emr_structure-%s.txt' %
pat.subdir_name)
print(
'EMR structure:',
gmEMRStructItems.export_emr_structure(patient=pat,
filename=fname))
# as timeline
fname = os.path.expanduser('~/gnumed/gm-emr-%s.timeline' %
pat.subdir_name)
try:
print(
'EMR timeline:',
gmTimelineExporter.create_timeline_file(
patient=pat,
filename=fname,
include_documents=True,
include_vaccinations=True,
include_encounters=True))
finally:
pass
# as journal by encounter
exporter = gmPatientExporter.cEMRJournalExporter()
fname = os.path.expanduser(
'~/gnumed/gm-emr-journal_by_encounter-%s.txt' %
pat.subdir_name)
print(
'EMR journal (by encounter):',
exporter.save_to_file_by_encounter(patient=pat,
filename=fname))
# as journal by mod time
fname = os.path.expanduser(
'~/gnumed/gm-emr-journal_by_mod_time-%s.txt' % pat.subdir_name)
print(
'EMR journal (by mod time):',
exporter.save_to_file_by_mod_time(patient=pat, filename=fname))
# as statistical summary
fname = os.path.expanduser('~/gnumed/gm-emr-statistics-%s.txt' %
pat.subdir_name)
output_file = io.open(fname,
mode='wt',
encoding='utf8',
errors='replace')
emr = pat.emr
output_file.write(emr.format_statistics())
output_file.close()
print('EMR statistics:', fname)
# as text file
exporter = gmPatientExporter.cEmrExport(patient=pat)
fname = os.path.expanduser('~/gnumed/gm-emr-text_export-%s.txt' %
pat.subdir_name)
output_file = io.open(fname,
mode='wt',
encoding='utf8',
errors='replace')
exporter.set_output_file(output_file)
exporter.dump_constraints()
exporter.dump_demographic_record(True)
exporter.dump_clinical_record()
exporter.dump_med_docs()
output_file.close()
print('EMR text file:', fname)
# another patient ?
pat = gmPersonSearch.ask_for_patient()
return 0
# tool export_patient_as (vcf, gdt, ...)
#if tool == 'export_pat_demographics':
# should not happen (because checked against _known_tools)
return -1
# main
#----------------------------------------------------------------------
if __name__ == "__main__":
# 3rd party
import wx
# GNUmed
from Gnumed.business import gmPersonSearch
from Gnumed.wxpython import gmSOAPWidgets
_log.info("starting Notebooked progress notes input plugin...")
try:
# obtain patient
patient = gmPersonSearch.ask_for_patient()
if patient is None:
print "None patient. Exiting gracefully..."
sys.exit(0)
gmPatSearchWidgets.set_active_patient(patient=patient)
# display standalone multisash progress notes input
application = wx.wx.PyWidgetTester(size = (800,600))
multisash_notes = gmSOAPWidgets.cNotebookedProgressNoteInputPanel(application.frame, -1)
application.frame.Show(True)
application.MainLoop()
# clean up
if patient is not None:
try:
def run_tool():
"""Run a console tool.
Exit codes as per man page:
0: normal termination of the client
< 0: some error occurred while trying to run a console tool
-1: an unknown console tool was requested
< -1: an error occurred while a console tool was run
-999: hard abort of the client
One of these needs to be returned from this function (and,
by extension from the tool having been run, if any).
"""
tool = _cfg.get(option='--tool', source_order=[('cli', 'return')])
if tool is None:
# not running a tool
return None
if tool not in _known_tools:
_log.error('unknown tool requested: %s', tool)
print('GNUmed startup: Unknown tool [%s] requested.' % tool)
print('GNUmed startup: Known tools: %s' % _known_tools)
return -1
print('')
print('==============================================')
print('Running tool: %s' % tool)
print('----------------------------------------------')
print('')
if tool == 'generate_man_page':
man_page_fname = os.path.abspath(os.path.join('.', 'gnumed.1'))
man_page_file = open(man_page_fname, mode='wt', encoding='utf8')
man_page_file.write(__doc__ % datetime.date.today().strftime('%x'))
man_page_file.close()
print('MAN page saved as:', man_page_fname)
return 0
login, creds = gmPG2.request_login_params()
pool = gmConnectionPool.gmConnectionPool()
pool.credentials = creds
print('')
if tool == 'read_all_rows_of_table':
result = gmPG2.read_all_rows_of_table()
if result in [None, True]:
print('Success.')
return 0
print('Failed. Check the log for details.')
return -2
if tool == 'check_mimetypes_in_archive':
from Gnumed.business import gmDocuments
return gmDocuments.check_mimetypes_in_archive()
if tool == 'check_enc_epi_xref':
from Gnumed.business import gmEMRStructItems
return gmEMRStructItems.check_fk_encounter_fk_episode_x_ref()
if tool == 'fingerprint_db':
fname = 'db-fingerprint.txt'
result = gmPG2.get_db_fingerprint(fname=fname, with_dump=True)
if result == fname:
print('Success: %s' % fname)
return 0
print('Failed. Check the log for details.')
return -2
if tool == 'export_pat_emr_structure':
# setup praxis
from Gnumed.business import gmPraxis
praxis = gmPraxis.gmCurrentPraxisBranch(
branch=gmPraxis.get_praxis_branches()[0])
# get patient
from Gnumed.business import gmPersonSearch
pat = gmPersonSearch.ask_for_patient()
# setup exporters
from Gnumed.business import gmEMRStructItems
from Gnumed.exporters import gmTimelineExporter
from Gnumed.exporters import gmPatientExporter
while pat is not None:
print('patient:', pat.description_gender)
# as EMR structure
fname = os.path.expanduser('~/gnumed/gm-emr_structure-%s.txt' %
pat.subdir_name)
print(
'EMR structure:',
gmEMRStructItems.export_emr_structure(patient=pat,
filename=fname))
# as timeline
fname = os.path.expanduser('~/gnumed/gm-emr-%s.timeline' %
pat.subdir_name)
try:
print(
'EMR timeline:',
gmTimelineExporter.create_timeline_file(
patient=pat,
filename=fname,
include_documents=True,
include_vaccinations=True,
include_encounters=True))
finally:
pass
# as journal by encounter
exporter = gmPatientExporter.cEMRJournalExporter()
fname = os.path.expanduser(
'~/gnumed/gm-emr-journal_by_encounter-%s.txt' %
pat.subdir_name)
print(
'EMR journal (by encounter):',
exporter.save_to_file_by_encounter(patient=pat,
filename=fname))
# as journal by mod time
fname = os.path.expanduser(
'~/gnumed/gm-emr-journal_by_mod_time-%s.txt' % pat.subdir_name)
print(
'EMR journal (by mod time):',
exporter.save_to_file_by_mod_time(patient=pat, filename=fname))
# as statistical summary
fname = os.path.expanduser('~/gnumed/gm-emr-statistics-%s.txt' %
pat.subdir_name)
output_file = open(fname,
mode='wt',
encoding='utf8',
errors='replace')
emr = pat.emr
output_file.write(emr.format_statistics())
output_file.close()
print('EMR statistics:', fname)
# as text file
exporter = gmPatientExporter.cEmrExport(patient=pat)
fname = os.path.expanduser('~/gnumed/gm-emr-text_export-%s.txt' %
pat.subdir_name)
output_file = open(fname,
mode='wt',
encoding='utf8',
errors='replace')
exporter.set_output_file(output_file)
exporter.dump_constraints()
exporter.dump_demographic_record(True)
exporter.dump_clinical_record()
exporter.dump_med_docs()
output_file.close()
print('EMR text file:', fname)
# another patient ?
pat = gmPersonSearch.ask_for_patient()
return 0
# tool export_patient_as (vcf, gdt, ...)
#if tool == 'export_pat_demographics':
# should not happen (because checked against _known_tools)
return -1
def run_tool():
tool = _cfg.get(option = '--tool', source_order = [('cli', 'return')])
if tool is None:
# not running a tool
return None
if tool not in _known_tools:
_log.error('unknown tool requested: %s', tool)
print('GNUmed startup: Unknown tool [%s] requested.' % tool)
print('GNUmed startup: Known tools: %s' % _known_tools)
return -1
print('')
print('==============================================')
print('Running tool: %s' % tool)
print('----------------------------------------------')
print('')
if tool == 'check_enc_epi_xref':
from Gnumed.business import gmEMRStructItems
return gmEMRStructItems.check_fk_encounter_fk_episode_x_ref()
if tool == 'export_pat_emr_structure':
# setup praxis
from Gnumed.business import gmPraxis
praxis = gmPraxis.gmCurrentPraxisBranch(branch = gmPraxis.get_praxis_branches()[0])
# get patient
from Gnumed.business import gmPersonSearch
pat = gmPersonSearch.ask_for_patient()
# setup exporters
from Gnumed.business import gmEMRStructItems
from Gnumed.exporters import gmTimelineExporter
from Gnumed.exporters import gmPatientExporter
while pat is not None:
print('patient:', pat['description_gender'])
# as EMR structure
fname = os.path.expanduser('~/gnumed/gm-emr_structure-%s.txt' % pat.subdir_name)
print('EMR structure:', gmEMRStructItems.export_emr_structure(patient = pat, filename = fname))
# as timeline
fname = os.path.expanduser('~/gnumed/gm-emr-%s.timeline' % pat.subdir_name)
try:
print('EMR timeline:', gmTimelineExporter.create_timeline_file (
patient = pat,
filename = fname,
include_documents = True,
include_vaccinations = True,
include_encounters = True
))
finally:
pass
# as journal by encounter
exporter = gmPatientExporter.cEMRJournalExporter()
fname = os.path.expanduser('~/gnumed/gm-emr-journal_by_encounter-%s.txt' % pat.subdir_name)
print('EMR journal (by encounter):', exporter.save_to_file_by_encounter(patient = pat, filename = fname))
# as journal by mod time
fname = os.path.expanduser('~/gnumed/gm-emr-journal_by_mod_time-%s.txt' % pat.subdir_name)
print('EMR journal (by mod time):', exporter.save_to_file_by_mod_time(patient = pat, filename = fname))
# as statistical summary
fname = os.path.expanduser('~/gnumed/gm-emr-statistics-%s.txt' % pat.subdir_name)
output_file = io.open(fname, mode = 'wt', encoding = 'utf8', errors = 'replace')
emr = pat.emr
output_file.write(emr.format_statistics())
output_file.close()
print('EMR statistics:', fname)
# as text file
exporter = gmPatientExporter.cEmrExport(patient = pat)
fname = os.path.expanduser('~/gnumed/gm-emr-text_export-%s.txt' % pat.subdir_name)
output_file = io.open(fname, mode = 'wt', encoding = 'utf8', errors = 'replace')
exporter.set_output_file(output_file)
exporter.dump_constraints()
exporter.dump_demographic_record(True)
exporter.dump_clinical_record()
exporter.dump_med_docs()
output_file.close()
print('EMR text file:', fname)
# another patient ?
pat = gmPersonSearch.ask_for_patient()
return 0
# tool export_patient_as (vcf, gdt, ...)
#if tool == 'export_pat_demographics':
# should not happen (because checked against _known_tools)
return -1