def sort_by_weighted_edit_dist(self):
"""
Sort by weighted edit distance from scTIM
again from John
"""
self.clear_weight()
leve = LeveDist(5, 5, 3)
for seq in self.__sequence:
seq.weight = leve.computeDistance(seq.seq, self.__scTIM.seq)
self.__sequence.sort(key=lambda seq:seq.weight, reverse = True)
def sort_by_edit_dist(self):
"""
Sort by edit distance from scTIM
Original from John Wenskovitch in Java
"""
self.clear_weight()
leve = LeveDist(1, 1, 1)
for seq in self.__sequence:
seq.weight = leve.computeDistance(seq.seq, self.__scTIM.seq)
self.__sequence.sort(key=lambda seq:seq.weight, reverse = True)
def sort_by_edit_dist(self):
"""
Sort by edit distance from scTIM
Original from John Wenskovitch in Java
"""
self.clear_weight()
leve = LeveDist(1, 1, 1)
for seq in self.__sequence:
seq.weight = leve.computeDistance(seq.seq, self.__scTIM.seq)
self.__sequence.sort(key=lambda seq:seq.weight, reverse = True)
def sort_by_weighted_edit_dist(self):
"""
Sort by weighted edit distance from scTIM
again from John
"""
self.clear_weight()
leve = LeveDist(5, 5, 3)
for seq in self.__sequence:
seq.weight = leve.computeDistance(seq.seq, self.__scTIM.seq)
# set the dTIM_core's weight to a large number, so that it will alway the top one
self.__sequence[0].weight += 9999999999
self.__sequence[-1].weight = self.__sequence[0].weight - 1
# myp = ""
# for seq in self.__sequence:
# myp += str(seq._sequence__name) + " "
# print myp
self.__sequence.sort(key=lambda seq: seq.weight, reverse = True)
