def get_MELC_files(self, path):
files, _ = myF.get_files(path, ('tif', 'TIF'))
files_pd = pd.DataFrame(files)
files_pd = files_pd.rename(columns={0: "path"})
def get_FID(x):
temp = x['path'].split(SEPARATOR)
_temp = temp[len(temp) - 1].split('.')[0].split('_')
return _temp[1] + '_' + _temp[2] + '_' + _temp[3] + '_' + _temp[4]
def get_order_index(x):
return int(x['path'].split(SEPARATOR)[-1].split('_')[-1][0:-4])
def get_filter(x):
temp = x['path'].split(SEPARATOR)[-1].split('_')
if len(temp) > 3:
return temp[-2]
else:
return ''
def get_integration_time(x):
temp = x['path'].split(SEPARATOR)[-1].split('_')
if len(temp) > 3:
return int(temp[-3])
else:
return 0
def get_antibody(x):
return x['path'].split(SEPARATOR)[-1].split('_')[1]
#def get_creation_time(x):
#return x['path'].split(SEPARATOR)[-1].split('_')[0]
files_pd = files_pd.rename(columns={0: "path"})
files_pd['fid'] = files_pd.apply(lambda x: get_FID(x), axis=1)
files_pd['order_index'] = files_pd.apply(lambda x: get_order_index(x),
axis=1)
files_pd['filter'] = files_pd.apply(lambda x: get_filter(x), axis=1)
files_pd['integration_time'] = files_pd.apply(
lambda x: get_integration_time(x), axis=1)
files_pd['antibody'] = files_pd.apply(lambda x: get_antibody(x),
axis=1)
#files_pd['creation_time'] = files_pd.apply(lambda x: get_creation_time(x), axis=1)
return files_pd
def __init__(self, calib_path):
files_tiff, _ = myF.get_files(calib_path, ('tif', 'TIF'))
files_pd = pd.DataFrame(files_tiff)
def get_FID(x):
temp = x['path'].split(SEPARATOR)
return temp[len(temp) - 1][11:-4]
def get_order_index(x):
return int(x['path'].split(SEPARATOR)[-1].split('_')[-1][0:-4])
def get_filter(x):
temp = x['path'].split(SEPARATOR)[-1].split('_')
if len(temp) > 3:
return temp[-2]
else:
return ''
def get_integration_time(x):
temp = x['path'].split(SEPARATOR)[-1].split('_')
if len(temp) > 3:
return int(temp[-3])
else:
return 0
def get_creation_time(x):
return x['path'].split(SEPARATOR)[-1].split('_')[0]
files_pd = files_pd.rename(columns={0: "path"})
files_pd['fid'] = files_pd.apply(lambda x: get_FID(x), axis=1)
files_pd['order_index'] = files_pd.apply(lambda x: get_order_index(x),
axis=1)
files_pd['filter'] = files_pd.apply(lambda x: get_filter(x), axis=1)
files_pd['integration_time'] = files_pd.apply(
lambda x: get_integration_time(x), axis=1)
files_pd['creation_time'] = files_pd.apply(
lambda x: get_creation_time(x), axis=1)
self.files_pd = files_pd
def get_dataFrame_MELCraw(self, path_raw_data):
files_png, creation_times = myF.get_files(path_raw_data, ('png'))
files_pd = pd.DataFrame(files_png)
creation_times = pd.DataFrame(creation_times)
return files_pd, creation_times