def eps_sig_fij_sort(i=1, j=1, ipb=[1,2,3,4], opt=1, iph=1, difn=None):
"""
Sorting the result from fij for ipb based on psi
regardless of the detector it comes from.
Arguments
=========
i = 1
j = 1
ipb = [1,2,3,4]
opt = 1 (1: sort based on sin2psi, 2: sort based on psi)
iph = 1
# examples
psi, sin2psi, eps, sigma = \
eps_sig_fij_sort(i=1,j=1,ipb=[1,2,3], opt=1, iph=1)
"""
# import the shell sort f2py-wrapped binary module
fc(difn)
from MP import ssort
ssort = ssort.shellSort
# from sort import shellsort as ssort
phi = []; beta = []
psi = []; sigma = []
eps = []
for k in xrange(len(ipb)):
p, b, e1, e2, s = eps_sig_fij(i=i,j=j,ipb=ipb[k], iph=iph, difn=difn)
phi.append(p); beta.append(beta)
psi1 = b - 11.8; psi2 = b + 11.8
psi.append(psi1); psi.append(psi2)
sigma.append(s); sigma.append(s)
eps.append(e1); eps.append(e2)
# sort
sin2psi = sin(np.array(psi)*pi/180.)**2
if opt==1:
sorted, ind = ssort(sin2psi, len(sin2psi))
elif opt==2:
sorted, ind = ssort(psi, len(psi))
else: raise IOError, 'Wrong option'
temp1 = []
temp2 = []
temp3 = []
for k in xrange(len(sorted)):
temp1.append(sigma[ind[k]-1])
temp2.append(eps[ind[k]-1])
temp3.append(psi[ind[k]-1])
sigma = temp1
eps = temp2
psi = temp3
return psi, sin2psi, eps, sigma
def fij(i=1, j=1, iph=1, difn=None):
"""
Arguments
=========
i = 1
j = 1
iph = 1
Fij (step, phi, psi)
psi (step, phi)
"""
fc(difn)
from MP import ssort
ssort = ssort.shellSort
# from ssort import shellSort as ssort
istep = 1
Psi = []
F = []
while True:
print "istep:", istep
try:
psi, f = fijstep(i, j, istep, iph, difn=difn)
except:
break
else:
## -- sorting block starts --
# f(phi, psi)
ft = f.T
x = psi
sortedpsi, ind = ssort(x)
temp = []
for k in xrange(len(sortedpsi)):
temp.append(ft[ind[k] - 1])
ft = np.array(temp)
f = ft.T
psi = sortedpsi
## -- sorting block ends --
F.append(f)
Psi.append(psi)
istep = istep + 1
# F(step, phi, psi)
# Psi(step, phi)
if len(F) == 0 or len(Psi) == 0:
print "Something fishy happened: len(F)==0 or len(Psi)==0"
print len(F), len(Psi)
return np.array(F), np.array(Psi)
def fij(i=1, j=1, iph=1, difn=None):
"""
Arguments
=========
i = 1
j = 1
iph = 1
Fij (step, phi, psi)
psi (step, phi)
"""
fc(difn)
from MP import ssort
ssort = ssort.shellSort
#from ssort import shellSort as ssort
istep = 1
Psi = []
F = []
while True:
print 'istep:', istep
try: psi, f = fijstep(i, j, istep, iph, difn=difn)
except: break
else:
## -- sorting block starts --
#f(phi, psi)
ft = f.T
x = psi
sortedpsi, ind = ssort(x)
temp = []
for k in xrange(len(sortedpsi)):
temp.append(ft[ind[k]-1])
ft = np.array(temp)
f = ft.T
psi = sortedpsi
## -- sorting block ends --
F.append(f)
Psi.append(psi)
istep = istep + 1
# F(step, phi, psi)
# Psi(step, phi)
if len(F)==0 or len(Psi)==0:
print "Something fishy happened: len(F)==0 or len(Psi)==0"
print len(F), len(Psi)
return np.array(F), np.array(Psi)
def intepsphiout(istep=0, phi=0, iphi=0, iph=1, isort=False, iopt=0):
"""
Arguments
=========
istep = 0 (starts from 0)
phi = -90 or iphi as index for iopt 4 and 5.
iph = 1 (phase starts from 1)
isort = False
iopt =
0: ('int_eps_ph%i.out') - at unloads,
1: ('int_els_ph%i.out') - at loads
2: ('igstrain_load_ph%i.out') - at
3: ('igstrain_unload_ph%i.out') - at
4: ('igstrain_unloads_avg.out') at unloads
5: ('igstrain_loads_avg.out') at loads
"""
from MP import ssort
sh = ssort.sh
ind_swap = ssort.ind_swap
ssort = ssort.shellSort
# from ssort import shellSort as ssort
# from ssort import sh
# from ssort import ind_swap
eps, sig, psi = [], [], []
if iopt == 0:
filename = "int_eps_ph%i.out" % iph
elif iopt == 1:
filename = "int_els_ph%i.out" % iph
elif iopt == 2:
filename = "igstrain_load_ph%i.out" % iph
elif iopt == 3:
filename = "igstrain_unload_ph%i.out" % iph
elif iopt == 4:
filename = "igstrain_unloads_avg.out"
elif iopt == 5:
filename = "igstrain_loads_avg.out"
fc(filename)
if iopt < 4:
dl = open(filename, "r").readlines()
npb = int(dl[1].split()[0])
dat = dl[2:]
dat = dat[(istep) * npb : (istep) * npb + npb]
if len(dat) == 0:
raise IOError, "empty dat is returned .."
for i in xrange(len(dat)):
temp = map(float, dat[i].split())
step, p, beta, psi1, psi2, eps1, eps2, sig1, sig2, n1, n2, v1, v2 = temp[:13]
ms11, ms22, ms33, ms23, ms13, ms12 = temp[13:19]
me11, me22, me33, me23, me13, me12 = temp[19:25]
if p == phi:
eps.append(eps1)
eps.append(eps2)
sig.append(sig1)
sig.append(sig2)
psi.append(psi1) # detector 1
psi.append(psi2) # detector 2
if isort:
temp1, temp2 = [], []
sortedarray, ind = ssort(psi) # , len(psi))
for k in xrange(len(sortedarray)):
temp1.append(eps[ind[k] - 1])
temp2.append(sig[ind[k] - 1])
eps = temp1
sigma = temp2
psi = sortedarray
return np.array(psi), np.array(eps), np.array(sig), ms11, ms22, ms33, ms23, ms13, ms12
if iopt == 4 or iopt == 5:
from sff_converter import condition
from pepshkl import reader3 as reader
difl, nphi, phis, nbeta, neps, eps = condition()
tdat, psi = reader(filename, isort) # [ist,iphi,ipsi]
sin2psi = np.sin(psi * np.pi / 180.0) ** 2
npsi = len(psi)
eps = tdat[istep, iphi]
return psi, eps
raise IOError, "Unexpected ioption give in intepsphiout"
def eps_sig_fij_sort(i=1, j=1, ipb=[1, 2, 3, 4], opt=1, iph=1, difn=None):
"""
Sorting the result from fij for ipb based on psi
regardless of the detector it comes from.
Arguments
=========
i = 1
j = 1
ipb = [1,2,3,4]
opt = 1 (1: sort based on sin2psi, 2: sort based on psi)
iph = 1
# examples
psi, sin2psi, eps, sigma = \
eps_sig_fij_sort(i=1,j=1,ipb=[1,2,3], opt=1, iph=1)
"""
# import the shell sort f2py-wrapped binary module
fc(difn)
from MP import ssort
ssort = ssort.shellSort
# from sort import shellsort as ssort
phi = []
beta = []
psi = []
sigma = []
eps = []
for k in xrange(len(ipb)):
p, b, e1, e2, s = eps_sig_fij(i=i, j=j, ipb=ipb[k], iph=iph, difn=difn)
phi.append(p)
beta.append(beta)
psi1 = b - 11.8
psi2 = b + 11.8
psi.append(psi1)
psi.append(psi2)
sigma.append(s)
sigma.append(s)
eps.append(e1)
eps.append(e2)
# sort
sin2psi = sin(np.array(psi) * pi / 180.0) ** 2
if opt == 1:
sorted, ind = ssort(sin2psi, len(sin2psi))
elif opt == 2:
sorted, ind = ssort(psi, len(psi))
else:
raise IOError, "Wrong option"
temp1 = []
temp2 = []
temp3 = []
for k in xrange(len(sorted)):
temp1.append(sigma[ind[k] - 1])
temp2.append(eps[ind[k] - 1])
temp3.append(psi[ind[k] - 1])
sigma = temp1
eps = temp2
psi = temp3
return psi, sin2psi, eps, sigma
def intepsphiout(istep=0, phi=0, iphi=0, iph=1, isort=False, iopt=0):
"""
Arguments
=========
istep = 0 (starts from 0)
phi = -90 or iphi as index for iopt 4 and 5.
iph = 1 (phase starts from 1)
isort = False
iopt =
0: ('int_eps_ph%i.out') - at unloads,
1: ('int_els_ph%i.out') - at loads
2: ('igstrain_load_ph%i.out') - at
3: ('igstrain_unload_ph%i.out') - at
4: ('igstrain_unloads_avg.out') at unloads
5: ('igstrain_loads_avg.out') at loads
"""
from MP import ssort
sh=ssort.sh
ind_swap=ssort.ind_swap
ssort=ssort.shellSort
#from ssort import shellSort as ssort
#from ssort import sh
#from ssort import ind_swap
eps, sig, psi = [], [], []
if iopt==0: filename='int_eps_ph%i.out'%iph
elif iopt==1: filename='int_els_ph%i.out'%iph
elif iopt==2: filename='igstrain_load_ph%i.out'%iph
elif iopt==3: filename='igstrain_unload_ph%i.out'%iph
elif iopt==4: filename='igstrain_unloads_avg.out'
elif iopt==5: filename='igstrain_loads_avg.out'
fc(filename)
if iopt<4:
dl = open(filename, 'r').readlines()
npb = int(dl[1].split()[0])
dat = dl[2:]
dat = dat[(istep)*npb: (istep)*npb + npb]
if len(dat)==0: raise IOError, 'empty dat is returned ..'
for i in xrange(len(dat)):
temp = map(float, dat[i].split())
step, p, beta, psi1, psi2, eps1, eps2,\
sig1, sig2, n1, n2, v1, v2 = temp[:13]
ms11, ms22, ms33, ms23, ms13, ms12 = temp[13:19]
me11, me22, me33, me23, me13, me12 = temp[19:25]
if p==phi:
eps.append(eps1); eps.append(eps2)
sig.append(sig1); sig.append(sig2)
psi.append(psi1) # detector 1
psi.append(psi2) # detector 2
if isort:
temp1, temp2 = [], []
sortedarray, ind = ssort(psi)#, len(psi))
for k in xrange(len(sortedarray)):
temp1.append(eps[ind[k]-1])
temp2.append(sig[ind[k]-1])
eps = temp1
sigma = temp2
psi = sortedarray
return np.array(psi), np.array(eps), np.array(sig),\
ms11, ms22, ms33, ms23, ms13, ms12
if iopt==4 or iopt==5:
from sff_converter import condition
from pepshkl import reader3 as reader
difl, nphi, phis, nbeta, neps, eps = condition()
tdat, psi = reader(filename,isort) #[ist,iphi,ipsi]
sin2psi = np.sin(psi*np.pi/180.)**2
npsi = len(psi)
eps = tdat[istep, iphi]
return psi, eps
raise IOError, 'Unexpected ioption give in intepsphiout'
