Python CycleBondSelector.select Examples

Example #1

File: test_bondSelector.py Project: 8848/Pymol-script-repo

 def test_CycleBondSelector_select_none(self):
     """
      test CycleBondSelector select: no bonds
     """
     cbSel = CycleBondSelector()
     ats = self.mol.allAtoms[4:8]
     bnds = ats.bonds[0]
     resultBnds = cbSel.select(bnds)
     #print 'no_cb_bonds:len(resultBnds)=', len(resultBnds)
     self.assertEqual(len(resultBnds) , 0)

Example #2

File: test_bondSelector.py Project: peach-eater/pymol-scripts

 def test_CycleBondSelector_select_none(self):
     """
      test CycleBondSelector select: no bonds
     """
     cbSel = CycleBondSelector()
     ats = self.mol.allAtoms[4:8]
     bnds = ats.bonds[0]
     resultBnds = cbSel.select(bnds)
     #print 'no_cb_bonds:len(resultBnds)=', len(resultBnds)
     self.assertEqual(len(resultBnds), 0)

Example #3

File: test_bondSelector.py Project: 8848/Pymol-script-repo

 def test_CycleBondSelector_select_all(self):
     """
      test CycleBondSelector select: all bonds
     """
     cbSel = CycleBondSelector()
     ats = self.mol.allAtoms
     bnds = ats.bonds[0]
     resultBnds = cbSel.select(bnds)
     #print 'all_cb_bonds:len(resultBnds)=', len(resultBnds)
     #self.assertEqual(len(resultBnds) , 43)
     #because of di-sulfide bridges:
     #when increase RingFinder parameter "maxSize"
     self.assertEqual(len(resultBnds) , 165)

Example #4

File: test_bondSelector.py Project: peach-eater/pymol-scripts

 def test_CycleBondSelector_select_all(self):
     """
      test CycleBondSelector select: all bonds
     """
     cbSel = CycleBondSelector()
     ats = self.mol.allAtoms
     bnds = ats.bonds[0]
     resultBnds = cbSel.select(bnds)
     #print 'all_cb_bonds:len(resultBnds)=', len(resultBnds)
     #self.assertEqual(len(resultBnds) , 43)
     #because of di-sulfide bridges:
     #when increase RingFinder parameter "maxSize"
     self.assertEqual(len(resultBnds), 165)