def __measureAll(self,img,measure,changeslice, name, noise) : """ Measures a characteristic for all the cells in a stack. """ dico=self.__dictCells[name] if changeslice == True : img.setSlice(1) for cellname in dico.keys() : roitemp=dico[cellname].getRoi(0) self.__dictMeasures[dico[cellname]][measure]=[] if isinstance(roitemp,Roi) : m=Morph(img,roitemp) if noise is not None : m.setNoise(noise) self.__dictMeasures[dico[cellname]][measure].append(m.__getattribute__(measure)) #self.__dictMeasures[dico[cellname]][measure].append(Morph(img,roitemp).__getattribute__(measure)) else : self.__dictMeasures[dico[cellname]][measure].append(Double.NaN) for i in range(2,img.getImageStackSize()+1) : if changeslice == True : img.setSlice(i) for cellname in dico.keys() : roitemp=dico[cellname].getRoi(i-1) if isinstance(roitemp,Roi) : m=Morph(img,roitemp) if noise is not None : m.setNoise(noise) self.__dictMeasures[dico[cellname]][measure].append(m.__getattribute__(measure)) #self.__dictMeasures[dico[cellname]][measure].append(Morph(img,roitemp).__getattribute__(measure)) else : self.__dictMeasures[dico[cellname]][measure].append(Double.NaN)
