def testLoadSpikeListWithTime(self):
spk = spikes.load_spikelist("tmp2.txt",
id_list=range(30, 40),
t_start=0,
t_stop=100)
assert (len(spk)
== 10) and (spk.mean_rate() > 0) and (spk.time_parameters()
== (0, 100))
def get_N_non_silent(fname,s=None,N=0):
if s==None: s=spk.load_spikelist(fname)
idl=s.id_list
ids=idl[np.transpose(s.mean_rates(1))>0]
print len(ids)
if N==0:
return s.id_slice(ids)
elif len(ids)<N: return s.id_slice(ids)
else:
np.random.shuffle(ids)
return s.id_slice(ids[0:N])
def testSaveAndLoadPickleTimePart(self):
file = io.StandardPickleFile("tmp.pickle")
self.spk.save(file)
spk2 = spikes.load_spikelist(file, t_start = 0, t_stop= 50)
assert (spk2.t_start == 0) and (spk2.t_stop == 50)
def testLoadSpikeList(self):
spk = spikes.load_spikelist("tmp2.txt")
assert (len(spk) == 50) and (spk.mean_rate() > 0)
def testSaveAndLoadTxtIdsPartInt(self):
file = io.StandardTextFile("tmp.txt")
self.spk.save(file)
spk2 = spikes.load_spikelist(file, id_list=5)
assert numpy.all(spk2.id_list == [0,1,2,3,4])
def testSaveAndLoadPickle(self):
file = io.StandardPickleFile("tmp.pickle")
self.spk.save(file)
spk2 = spikes.load_spikelist(file)
assert len(spk2) == len(self.spk)
def testSaveAndLoadTxtTimePart(self):
self.spk.save("tmp.txt")
spk2 = spikes.load_spikelist("tmp.txt", t_start = 0, t_stop= 50)
assert (spk2.t_start == 0) and (spk2.t_stop == 50)
def testSaveAndLoadTxtIdsPart(self):
self.spk.save("tmp.txt")
spk2 = spikes.load_spikelist("tmp.txt", id_list=[1,2,3])
assert numpy.all(spk2.id_list == [1,2,3])
def testSaveAndLoadTxt(self):
self.spk.save("tmp.txt")
spk2 = spikes.load_spikelist("tmp.txt")
assert len(spk2) == len(self.spk)
def testSaveAndLoadTxtIdsPart(self):
self.spk.save("tmp.txt")
spk2 = spikes.load_spikelist("tmp.txt", id_list=[1, 2, 3])
assert numpy.all(spk2.id_list == [1, 2, 3])
def testLoadSpikeList(self):
spk = spikes.load_spikelist("tmp2.txt")
assert (len(spk) == 50) and (spk.mean_rate() > 0)
def testLoadSpikeListWithIds(self):
spk = spikes.load_spikelist("tmp2.txt", id_list=range(30, 40))
assert (len(spk) == 10) and (spk.mean_rate() > 0)
def testSaveAndLoadPickleTimePart(self):
file = io.StandardPickleFile("tmp.pickle")
self.spk.save(file)
spk2 = spikes.load_spikelist(file, t_start=0, t_stop=50)
assert (spk2.t_start == 0) and (spk2.t_stop == 50)
def testSaveAndLoadPickle(self):
file = io.StandardPickleFile("tmp.pickle")
self.spk.save(file)
spk2 = spikes.load_spikelist(file)
assert len(spk2) == len(self.spk)
def testSaveAndLoadTxtIdsPartInt(self):
file = io.StandardTextFile("tmp.txt")
self.spk.save(file)
spk2 = spikes.load_spikelist(file, id_list=5)
assert numpy.all(spk2.id_list == [0, 1, 2, 3, 4])
def testLoadSpikeListWithIds(self):
spk = spikes.load_spikelist("tmp2.txt", id_list=range(30,40))
assert (len(spk) == 10) and (spk.mean_rate() > 0)
def testSaveAndLoadTxt(self):
self.spk.save("tmp.txt")
spk2 = spikes.load_spikelist("tmp.txt")
assert len(spk2) == len(self.spk)
def testLoadSpikeListWithTime(self):
spk = spikes.load_spikelist("tmp2.txt", id_list=range(30,40), t_start=0, t_stop=100)
assert (len(spk) == 10) and (spk.mean_rate() > 0) and (spk.time_parameters() == (0,100))
def testSaveAndLoadTxtTimePart(self):
self.spk.save("tmp.txt")
spk2 = spikes.load_spikelist("tmp.txt", t_start=0, t_stop=50)
assert (spk2.t_start == 0) and (spk2.t_stop == 50)
