By consequence, to manipulate fields of a SQL row, you just need to read/write a Python variable (class member).
"""
import sys
sys.path.append('..')
if __name__ == '__main__':
from OpenElectrophy import open_db
# connection to a DB
url = 'sqlite:///test.sqlite'
open_db(url=url, myglobals=globals(), use_global_session=True)
# create an empty segment variable
seg1 = Segment()
# fill attributes (=columns in SQL)
seg1.name = 'My first segment'
seg1.description = 'This is just a test'
seg1.index = 3
# TEXT field in SQL = str in python
print(seg1.name)
print(type(seg1.name))
print(seg1.id)
# give None
"""
import sys
sys.path.append('..')
if __name__== '__main__':
from OpenElectrophy import open_db, sql, neo_to_oe, TryItIO
import datetime
import numpy
# connection to a DB
open_db( url = 'sqlite:///test.sqlite', myglobals= globals(), use_global_session = True)
# create 5 Blocks with different dates
for i in range(5):
neo_bl = TryItIO().read(nb_segment = 2, duration = 2)
bl = neo_to_oe(neo_bl, cascade = True)
bl.rec_datetime = datetime.datetime(2012, 06, 1+i, 12,30,40)
bl.name = 'test sql %d' %i
bl.save()
print bl
# select all Block.id after 3 june 2012 and Segment name is 1
query = """
SELECT Block.id, Segment.id, AnalogSignal.id
"""
Update
------------------
If you want to update a row, it is easy:
* Load an object
* modify its attributes
* Save the object
"""
import sys
sys.path.append('..')
if __name__== '__main__':
from OpenElectrophy import open_db
# connection to a DB
open_db( url = 'sqlite:///test.sqlite', myglobals= globals(), use_global_session = True)
# I know the ID
id= 2
seg = Segment.load(id)
# Modify attribute
seg.name = 'modified name'
# save
seg.save()
"""
import sys
sys.path.append('..')
if __name__== '__main__':
from OpenElectrophy import open_db, OEBase
from OpenElectrophy.io import TryItIO # come from neo
import numpy as np
import quantities as pq
# connection to a DB 1
dbinfo1 = open_db( url = 'sqlite:///test1.sqlite', myglobals=None, use_global_session = False)
session1 = dbinfo1.Session() # create a sqlalchemy session
classes1 = { }
for c in dbinfo1.mapped_classes:
classes1[c.__name__] = c
# You can do this
Block = classes1['Block']
bl = Block(name = 'yep')
# or this
bl = classes1['Block'](name = 'yep')
# This allow you to play with 2 databases
# connection to a DB 2
dbinfo2 = open_db( url = 'sqlite:///test2.sqlite', myglobals=None, use_global_session = False)
classes2 = { }
for c in dbinfo2.mapped_classes:
By consequence, to manipulate fields of a SQL row, you just need to read/write a Python variable (class member).
"""
import sys
sys.path.append("..")
if __name__ == "__main__":
from OpenElectrophy import open_db
# connection to a DB
url = "sqlite:///test.sqlite"
open_db(url=url, myglobals=globals(), use_global_session=True)
# create an empty segment variable
seg1 = Segment()
# fill attributes (=columns in SQL)
seg1.name = "My first segment"
seg1.description = "This is just a test"
seg1.index = 3
# TEXT field in SQL = str in python
print seg1.name
print type(seg1.name)
print seg1.id
# give None
"""
import sys
sys.path.append("..")
if __name__ == "__main__":
from OpenElectrophy import open_db, OEBase
from OpenElectrophy.io import TryItIO # come from neo
import numpy as np
import quantities as pq
# connection to a DB 1
dbinfo1 = open_db(url="sqlite:///test1.sqlite", myglobals=None, use_global_session=False)
session1 = dbinfo1.Session() # create a sqlalchemy session
classes1 = {}
for c in dbinfo1.mapped_classes:
classes1[c.__name__] = c
# You can do this
Block = classes1["Block"]
bl = Block(name="yep")
# or this
bl = classes1["Block"](name="yep")
# This allow you to play with 2 databases
# connection to a DB 2
dbinfo2 = open_db(url="sqlite:///test2.sqlite", myglobals=None, use_global_session=False)
classes2 = {}
for c in dbinfo2.mapped_classes:
For more detail see open_db.
"""
import sys
sys.path.append('..')
if __name__== '__main__':
from OpenElectrophy import open_db
# connection to a DB
#url = 'sqlite:////home/sgarcia/test.db'
#url = 'sqlite:///C:/Users/sgarcia/Desktop/test.db'
#url = 'sqlite:///test.db'
#open_db( url = url)
# this open mysql
url = 'mysql://*****:*****@neuro001.univ-lyon1.fr/test_dev_1'
open_db( url = url, myglobals= globals(), use_global_session = True)
# this open sqlite
open_db( url = 'sqlite:///test.db', myglobals= globals(), use_global_session = True)
# this open sqlite + pytables (hdf5)
url = 'mysql://*****:*****@neuro001.univ-lyon1.fr/test_dev_1'
open_db( url = url, myglobals= globals(), use_global_session = True, hdf5_filename = 'test1.h5')
