def update_data(self, x_attr, y_attr, i, j):
"""
Update graph
:param x_attr: x attributes
:param y_attr: y attributes
:return: None
"""
OWScatterPlotGraph.update_data(self, x_attr, y_attr)
x_index, y_index = i, j
X = self.original_data[x_index]
Y = self.original_data[y_index]
valid = self.get_valid_list([x_index, y_index])
X = X[valid]
Y = Y[valid]
x_min, x_max = self.attr_values[x_attr]
X = numpy.array([numpy.ones_like(X), X]).T
try:
beta, _, _, _ = numpy.linalg.lstsq(X, Y)
except numpy.linalg.LinAlgError:
beta = [0, 0]
angle = atan2(beta[1], 1) * 180 / pi
ti = InfiniteLine((-999, beta[0] + -999 * beta[1]),
angle=angle,
pen='r') # TODO FIX
self.plot_widget.addItem(ti)
if self.last_line is not None:
self.plot_widget.removeItem(self.last_line)
self.last_line = ti
self.plot_widget.replot()
class OWScatterPlot(OWWidget):
"""Scatterplot visualization with explorative analysis and intelligent
data visualization enhancements."""
name = 'Scatter Plot'
description = "Interactive scatter plot visualization with " \
"intelligent data visualization enhancements."
icon = "icons/ScatterPlot.svg"
priority = 140
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table, Default),
("Other Data", Table),
("Features", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
auto_sample = Setting(True)
toolbar_selection = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
graph_name = "graph.plot_widget.plotItem"
class Information(OWWidget.Information):
sampled_sql = Msg("Large SQL table; showing a sample.")
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box, self, "attr_x", label="Axis x:",
callback=self.update_attr,
**common_options)
self.cb_attr_y = gui.comboBox(box, self, "attr_y", label="Axis y:",
callback=self.update_attr,
**common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter continuous values', callback=self.reset_graph_data)
self.sampling = gui.auto_commit(
self.controlArea, self, "auto_sample", "Sample", box="Sampling",
callback=self.switch_sampling, commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
box = gui.vBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(
box, self, "graph.attr_color", label="Color:",
emptyString="(Same color)", callback=self.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(
box, self, "graph.attr_label", label="Label:",
emptyString="(No labels)", callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(
box, self, "graph.attr_shape", label="Shape:",
emptyString="(Same shape)", callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(
box, self, "graph.attr_size", label="Size:",
emptyString="(Same size)", callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(
box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(
box, self, value='graph.class_density', label='Show class density',
callback=self.update_density)
gui.checkBox(
box, self, 'graph.label_only_selected',
'Label only selected points', callback=self.graph.update_labels)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.vBox(self.controlArea, "Zoom/Select"), nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction(
"Zoom in", self, triggered=lambda: zoom(1.25)
)
zoom_in.setShortcuts([QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))])
zoom_out = QtGui.QAction(
"Zoom out", self, shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25)
)
zoom_fit = QtGui.QAction(
"Fit in view", self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier | Qt.Key_0),
triggered=fit_to_view
)
self.addActions([zoom_in, zoom_out, zoom_fit])
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.update_graph()
def set_data(self, data):
self.Information.sampled_sql.clear()
self.__timer.stop()
self.sampling.setVisible(False)
self.sql_data = None
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.Information.sampled_sql()
self.sql_data = data
data_sample = data.sample_time(0.8, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.sampling.setVisible(True)
if self.auto_sample:
self.__timer.start()
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = (self.data and data and
data.domain.checksum() == self.data.domain.checksum())
self.data = data
self.data_metas_X = self.move_primitive_metas_to_X(data)
if not same_domain:
self.init_attr_values()
self.vizrank.initialize()
self.vizrank_button.setEnabled(
self.data is not None and self.data.domain.class_var is not None
and len(self.data.domain.attributes) > 1 and len(self.data) > 1)
if self.data is not None and self.data.domain.class_var is None \
and len(self.data.domain.attributes) > 1 and len(self.data) > 1:
self.vizrank_button.setToolTip(
"Data with a class variable is required.")
else:
self.vizrank_button.setToolTip("")
self.openContext(self.data)
def add_data(self, time=0.4):
if self.data and len(self.data) > 2000:
return self.__timer.stop()
data_sample = self.sql_data.sample_time(time, no_cache=True)
if data_sample:
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.data = Table.concatenate((self.data, data), axis=0)
self.data_metas_X = self.move_primitive_metas_to_X(self.data)
self.handleNewSignals()
def switch_sampling(self):
self.__timer.stop()
if self.auto_sample and self.sql_data:
self.add_data()
self.__timer.start()
def move_primitive_metas_to_X(self, data):
if data is not None:
new_attrs = [a for a in data.domain.attributes + data.domain.metas
if a.is_primitive()]
new_metas = [m for m in data.domain.metas if not m.is_primitive()]
data = Table.from_table(Domain(new_attrs, data.domain.class_vars,
new_metas), data)
return data
def set_subset_data(self, subset_data):
self.warning()
if isinstance(subset_data, SqlTable):
if subset_data.approx_len() < AUTO_DL_LIMIT:
subset_data = Table(subset_data)
else:
self.warning("Data subset does not support large Sql tables")
subset_data = None
self.subset_data = self.move_primitive_metas_to_X(subset_data)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data_metas_X, self.subset_data)
if self.attribute_selection_list and \
all(attr in self.graph.data_domain
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0].name
self.attr_y = self.attribute_selection_list[1].name
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.unconditional_commit()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.attr_x = None
self.cb_attr_y.clear()
self.attr_y = None
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.graph.attr_color = None
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.graph.attr_label = None
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.graph.attr_shape = None
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
self.graph.attr_size = None
if not self.data:
return
for var in self.data.domain.metas:
if not var.is_primitive():
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if attr.is_discrete:
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
for var in self.data.domain.metas:
if var.is_primitive():
self.cb_attr_x.addItem(self.icons[var], var.name)
self.cb_attr_y.addItem(self.icons[var], var.name)
self.cb_attr_color.addItem(self.icons[var], var.name)
if var.is_discrete:
self.cb_attr_shape.addItem(self.icons[var], var.name)
else:
self.cb_attr_size.addItem(self.icons[var], var.name)
self.cb_attr_label.addItem(self.icons[var], var.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def set_attr(self, attr_x, attr_y):
self.attr_x, self.attr_y = attr_x.name, attr_y.name
self.update_attr()
def update_attr(self):
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.send_features()
def update_colors(self):
self.graph.update_colors()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_graph(self, reset_view=True, **_):
self.graph.zoomStack = []
if not self.graph.have_data:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
self.send_data()
def send_data(self):
selected = unselected = None
# TODO: Implement selection for sql data
if isinstance(self.data, SqlTable):
selected = unselected = self.data
elif self.data is not None:
selection = self.graph.get_selection()
if len(selection) == 0:
self.send("Selected Data", None)
self.send("Other Data", self.data)
return
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
if unselected is None or len(unselected) == 0:
self.send("Other Data", None)
else:
self.send("Other Data", unselected)
def send_features(self):
features = None
if self.attr_x or self.attr_y:
dom = Domain([], metas=(StringVariable(name="feature"),))
features = Table(dom, [[self.attr_x], [self.attr_y]])
features.name = "Features"
self.send("Features", features)
def commit(self):
self.send_data()
self.send_features()
def get_widget_name_extension(self):
if self.data is not None:
return "{} vs {}".format(self.combo_value(self.cb_attr_x),
self.combo_value(self.cb_attr_y))
def send_report(self):
disc_attr = False
if self.data:
domain = self.data.domain
disc_attr = domain[self.attr_x].is_discrete or \
domain[self.attr_y].is_discrete
caption = report.render_items_vert((
("Color", self.combo_value(self.cb_attr_color)),
("Label", self.combo_value(self.cb_attr_label)),
("Shape", self.combo_value(self.cb_attr_shape)),
("Size", self.combo_value(self.cb_attr_size)),
("Jittering", (self.graph.jitter_continuous or disc_attr) and
self.graph.jitter_size)))
self.report_plot()
if caption:
self.report_caption(caption)
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.attribute_selection_list = None # list of Orange.data.Variable
common_options = {"labelWidth": 50, "orientation": "horizontal",
"sendSelectedValue": True, "valueType": str}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box, self, "attr_x", label="Axis x:",
callback=self.update_attr,
**common_options)
self.cb_attr_y = gui.comboBox(box, self, "attr_y", label="Axis y:",
callback=self.update_attr,
**common_options)
self.vizrank = self.VizRank(self)
vizrank_box = gui.widgetBox(box, None, orientation='horizontal')
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank_button = gui.button(
vizrank_box, self, "Rank projections", callback=self.vizrank.reshow,
tooltip="Find projections with good class separation")
self.vizrank_button.setEnabled(False)
gui.separator(box)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter continuous values', callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(
box, self, "graph.attr_color", label="Color:",
emptyString="(Same color)", callback=self.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(
box, self, "graph.attr_label", label="Label:",
emptyString="(No labels)", callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(
box, self, "graph.attr_shape", label="Shape:",
emptyString="(Same shape)", callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(
box, self, "graph.attr_size", label="Size:",
emptyString="(Same size)", callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(
box, self, value='graph.class_density', label='Show class density',
callback=self.update_density)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.widgetBox(self.controlArea, "Zoom/Select"), nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
dlg.deleteLater()
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction(
"Zoom in", self, triggered=lambda: zoom(1.25)
)
zoom_in.setShortcuts([QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))])
zoom_out = QtGui.QAction(
"Zoom out", self, shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25)
)
zoom_fit = QtGui.QAction(
"Fit in view", self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier | Qt.Key_0),
triggered=fit_to_view
)
self.addActions([zoom_in, zoom_out, zoom_fit])
self.graphButton.clicked.connect(self.save_graph)
class OWScatterPlot(OWWidget):
name = 'Scatter Plot'
description = 'Scatter plot visualization.'
icon = "icons/ScatterPlot.svg"
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table, Default),
("Other Data", Table),
("Features", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
toolbar_selection = Setting(0)
color_settings = Setting(None)
selected_schema_index = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
zoom_select_toolbar = SettingProvider(ZoomSelectToolbar)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
want_graph = True
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.attribute_selection_list = None # list of Orange.data.Variable
common_options = {"labelWidth": 50, "orientation": "horizontal",
"sendSelectedValue": True, "valueType": str}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box, self, "attr_x", label="Axis x:",
callback=self.update_attr,
**common_options)
self.cb_attr_y = gui.comboBox(box, self, "attr_y", label="Axis y:",
callback=self.update_attr,
**common_options)
self.vizrank = self.VizRank(self)
vizrank_box = gui.widgetBox(box, None, orientation='horizontal')
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank_button = gui.button(
vizrank_box, self, "Rank projections", callback=self.vizrank.reshow,
tooltip="Find projections with good class separation")
self.vizrank_button.setEnabled(False)
gui.separator(box)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter continuous values', callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(
box, self, "graph.attr_color", label="Color:",
emptyString="(Same color)", callback=self.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(
box, self, "graph.attr_label", label="Label:",
emptyString="(No labels)", callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(
box, self, "graph.attr_shape", label="Shape:",
emptyString="(Same shape)", callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(
box, self, "graph.attr_size", label="Size:",
emptyString="(Same size)", callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(
box, self, value='graph.class_density', label='Show class density',
callback=self.update_density)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.widgetBox(self.controlArea, "Zoom/Select"), nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
dlg.deleteLater()
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction(
"Zoom in", self, triggered=lambda: zoom(1.25)
)
zoom_in.setShortcuts([QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))])
zoom_out = QtGui.QAction(
"Zoom out", self, shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25)
)
zoom_fit = QtGui.QAction(
"Fit in view", self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier | Qt.Key_0),
triggered=fit_to_view
)
self.addActions([zoom_in, zoom_out, zoom_fit])
self.graphButton.clicked.connect(self.save_graph)
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.update_graph()
def set_data(self, data):
self.information(1)
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.information(1, "Data has been sampled")
data_sample = data.sample_time(1, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = \
self.data and data and \
data.domain.checksum() == self.data.domain.checksum()
self.data = data
self.data_metas_X = self.move_primitive_metas_to_X(data)
# TODO: adapt scatter plot to work on SqlTables (avoid use of X and Y)
if isinstance(self.data, SqlTable):
self.data.download_data()
if not same_domain:
self.init_attr_values()
self.vizrank._initialize()
self.vizrank_button.setEnabled(
self.data is not None and self.data.domain.class_var is not None
and len(self.data.domain.attributes) > 1)
self.openContext(self.data)
def move_primitive_metas_to_X(self, data):
if data is not None:
new_attrs = [a for a in data.domain.attributes + data.domain.metas
if a.is_primitive()]
new_metas = [m for m in data.domain.metas if not m.is_primitive()]
data = Table.from_table(Domain(new_attrs, data.domain.class_vars,
new_metas), data)
return data
def set_subset_data(self, subset_data):
self.subset_data = self.move_primitive_metas_to_X(subset_data)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data_metas_X, self.subset_data)
if self.attribute_selection_list and \
all(attr.name in self.graph.attribute_name_index
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0].name
self.attr_y = self.attribute_selection_list[1].name
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.unconditional_commit()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.cb_attr_y.clear()
self.attr_x = None
self.attr_y = None
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
if not self.data:
return
for var in self.data.domain.metas:
if not var.is_primitive():
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if attr.is_discrete:
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
for var in self.data.domain.metas:
if var.is_primitive():
self.cb_attr_x.addItem(self.icons[var], var.name)
self.cb_attr_y.addItem(self.icons[var], var.name)
self.cb_attr_color.addItem(self.icons[var], var.name)
if var.is_discrete:
self.cb_attr_shape.addItem(self.icons[var], var.name)
else:
self.cb_attr_size.addItem(self.icons[var], var.name)
self.cb_attr_label.addItem(self.icons[var], var.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def update_attr(self, attributes=None):
self.update_graph(attributes=attributes)
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.send_features()
def update_colors(self):
self.graph.update_colors()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_graph(self, attributes=None, reset_view=True, **_):
self.graph.zoomStack = []
if attributes and len(attributes) == 2:
self.attr_x, self.attr_y = attributes
if not self.graph.have_data:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
self.send_data()
def send_data(self):
selected = unselected = None
# TODO: Implement selection for sql data
if isinstance(self.data, SqlTable):
selected = unselected = self.data
elif self.data is not None:
selection = self.graph.get_selection()
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
self.send("Other Data", unselected)
def send_features(self):
features = None
if self.attr_x or self.attr_y:
dom = Domain([], metas=(StringVariable(name="feature"),))
features = Table(dom, [[self.attr_x], [self.attr_y]])
features.name = "Features"
self.send("Features", features)
def commit(self):
self.send_data()
self.send_features()
def set_colors(self):
dlg = self.create_color_dialog()
if dlg.exec_():
self.color_settings = dlg.getColorSchemas()
self.selected_schema_index = dlg.selectedSchemaIndex
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
self.update_graph()
def create_color_dialog(self):
c = ColorPaletteDlg(self, "Color Palette")
c.createDiscretePalette("discPalette", "Discrete Palette")
c.createContinuousPalette("contPalette", "Continuous Palette")
c.setColorSchemas(self.color_settings, self.selected_schema_index)
return c
def closeEvent(self, ce):
self.vizrank.close()
super().closeEvent(ce)
def hideEvent(self, he):
self.vizrank.hide()
super().hideEvent(he)
def sendReport(self):
self.startReport(
"%s [%s - %s]" % (self.windowTitle(), self.attr_x, self.attr_y))
self.reportSettings(
"Visualized attributes",
[("X", self.attr_x),
("Y", self.attr_y),
self.graph.attr_color and ("Color", self.graph.attr_color),
self.graph.attr_label and ("Label", self.graph.attr_label),
self.graph.attr_shape and ("Shape", self.graph.attr_shape),
self.graph.attr_size and ("Size", self.graph.attr_size)])
self.reportSettings(
"Settings",
[("Symbol size", self.graph.point_width),
("Opacity", self.graph.alpha_value),
("Jittering", self.graph.jitter_size),
("Jitter continuous attributes",
gui.YesNo[self.graph.jitter_continuous])])
self.reportSection("Graph")
self.reportImage(self.graph.save_to_file, QSize(400, 400))
def save_graph(self):
from Orange.widgets.data.owsave import OWSave
save_img = OWSave(data=self.graph.plot_widget.plotItem,
file_formats=FileFormat.img_writers)
save_img.exec_()
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
class VizRank(OWWidget):
name = "Rank projections (Scatter Plot)"
def __init__(self, parent_widget):
super().__init__()
self.parent_widget = parent_widget
self.want_control_area = False
self.running = False
self.progress = None
self.k = 10
self.projectionTable = QTableView()
self.mainArea.layout().addWidget(self.projectionTable)
self.projectionTable.setSelectionBehavior(QTableView.SelectRows)
self.projectionTable.setSelectionMode(QTableView.SingleSelection)
self.projectionTable.setSortingEnabled(True)
self.projectionTableModel = QStandardItemModel(self)
self.projectionTable.setModel(self.projectionTableModel)
self.projectionTable.selectionModel().selectionChanged.connect(
self.on_selection_changed)
self.button = gui.button(self.mainArea, self, "Start evaluation",
callback=self.toggle, default=True)
self.resize(380, 512)
self._initialize()
def _initialize(self):
self.running = False
self.projectionTableModel.clear()
self.projectionTableModel.setHorizontalHeaderLabels(
["Score", "Feature 1", "Feature 2"])
self.projectionTable.setColumnWidth(0, 60)
self.projectionTable.setColumnWidth(1, 120)
self.projectionTable.setColumnWidth(2, 120)
self.button.setText("Start evaluation")
self.button.setEnabled(False)
self.pause = False
self.data = None
self.attrs = []
self.scores = []
self.i, self.j = 0, 0
if self.progress:
self.progress.finish()
self.progress = None
self.information(0)
if self.parent_widget.data:
if not self.parent_widget.data.domain.class_var:
self.information(
0, "Data with a class variable is required.")
return
if len(self.parent_widget.data.domain.attributes) < 2:
self.information(
0, 'At least 2 unique features are needed.')
return
self.button.setEnabled(True)
def on_selection_changed(self, selected, deselected):
"""Called when the ranks view selection changes."""
a1 = selected.indexes()[1].data()
a2 = selected.indexes()[2].data()
self.parent_widget.update_attr(attributes=(a1, a2))
def toggle(self):
self.running ^= 1
if self.running:
self.button.setText("Pause")
self.run()
else:
self.button.setText("Continue")
self.button.setEnabled(False)
def run(self):
graph = self.parent_widget.graph
y_full = self.parent_widget.data.Y
norm = 1 / (len(y_full) * self.k)
if not self.attrs:
self.attrs = self.score_heuristic()
if not self.progress:
self.progress = gui.ProgressBar(
self, len(self.attrs) * (len(self.attrs) - 1) / 2)
for i in range(self.i, len(self.attrs)):
ind1 = graph.attribute_name_index[self.attrs[i]]
for j in range(self.j, i):
if not self.running:
self.i, self.j = i, j
if not self.projectionTable.selectedIndexes():
self.projectionTable.selectRow(0)
self.button.setEnabled(True)
return
ind2 = graph.attribute_name_index[self.attrs[j]]
X = graph.scaled_data[[ind1, ind2], :]
valid = graph.get_valid_list([ind1, ind2])
X = X[:, valid].T
y = y_full[valid]
knn = NearestNeighbors(n_neighbors=self.k).fit(X)
ind = knn.kneighbors(return_distance=False)
score = norm * np.sum(y[ind] == y.reshape(-1, 1))
pos = bisect_left(self.scores, score)
self.projectionTableModel.insertRow(
len(self.scores) - pos,
[QStandardItem("{:.4f}".format(score)),
QStandardItem(self.attrs[j]),
QStandardItem(self.attrs[i])])
self.scores.insert(pos, score)
self.progress.advance()
self.j = 0
self.progress.finish()
if not self.projectionTable.selectedIndexes():
self.projectionTable.selectRow(0)
self.button.setText("Finished")
self.button.setEnabled(False)
def score_heuristic(self):
X = self.parent_widget.graph.scaled_data.T
Y = self.parent_widget.data.Y
dom = Orange.data.Domain([ContinuousVariable(str(i))
for i in range(X.shape[1])],
self.parent_widget.data.domain.class_vars)
data = Orange.data.Table(dom, X, Y)
weights = ReliefF(n_iterations=100, k_nearest=self.k)(data)
attrs = sorted(
zip(weights,
(x.name for x in self.parent_widget.data.domain.attributes)
),
reverse=True)
return [a for _, a in attrs]
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
self.selection_dirty = False
common_options = {
"labelWidth": 50,
"orientation": "horizontal",
"sendSelectedValue": True,
"valueType": str
}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea,
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset, g.Spacing, g.SendSelection
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.SendSelection].clicked.connect(self.send_selection)
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
cb_auto_send = gui.checkBox(box, self, 'auto_send_selection',
'Send selection on change')
gui.setStopper(self, buttons[g.SendSelection], cb_auto_send,
"selection_dirty", self.send_selection)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
self.mainArea.setMinimumWidth(700)
self.mainArea.setMinimumHeight(550)
class OWScatterPlot(OWWidget):
name = 'Scatter plot'
description = 'Scatter plot visualization'
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table), ("Other Data", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
toolbar_selection = Setting(0)
color_settings = Setting(None)
selected_schema_index = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
zoom_select_toolbar = SettingProvider(ZoomSelectToolbar)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
self.selection_dirty = False
common_options = {
"labelWidth": 50,
"orientation": "horizontal",
"sendSelectedValue": True,
"valueType": str
}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea,
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset, g.Spacing, g.SendSelection
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.SendSelection].clicked.connect(self.send_selection)
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
cb_auto_send = gui.checkBox(box, self, 'auto_send_selection',
'Send selection on change')
gui.setStopper(self, buttons[g.SendSelection], cb_auto_send,
"selection_dirty", self.send_selection)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
self.mainArea.setMinimumWidth(700)
self.mainArea.setMinimumHeight(550)
# self.vizrank = OWVizRank(self, self.signalManager, self.graph,
# orngVizRank.SCATTERPLOT, "ScatterPlot")
# self.optimizationDlg = self.vizrank
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.major_graph_update()
def set_data(self, data: Orange.data.Table):
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = \
self.data and data and \
data.domain.checksum() == self.data.domain.checksum()
self.data = data
# TODO: adapt scatter plot to work on SqlTables (avoid use of X and Y)
if isinstance(self.data, SqlTable):
self.data.X = np.empty(
(len(self.data), len(self.data.domain.attributes)))
self.data.Y = np.empty(
(len(self.data), len(self.data.domain.class_vars)))
for i, row in enumerate(data):
self.data.X[i] = [
row[attr] for attr in self.data.domain.attributes
]
if self.data.domain.class_vars:
self.data.Y[i] = [
row[cv] for cv in self.data.domain.class_vars
]
# self.vizrank.clearResults()
if not same_domain:
self.init_attr_values()
self.openContext(self.data)
def set_subset_data(self, subset_data):
self.subset_data = subset_data
# self.vizrank.clearArguments()
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.set_data(self.data, self.subset_data)
# self.vizrank.resetDialog()
if self.attribute_selection_list and \
all(attr in self.graph.attribute_name_index
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0]
self.attr_y = self.attribute_selection_list[1]
self.attribute_selection_list = None
self.update_graph()
self.send_selection()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
# Callback from VizRank dialog
def show_selected_attributes(self):
val = self.vizrank.get_selected_projection()
if not val:
return
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
self.major_graph_update(val[3])
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.cb_attr_y.clear()
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
if not self.data:
return
for var in self.data.domain.metas:
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if isinstance(attr, DiscreteVariable):
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def major_graph_update(self, attributes=None, inside_colors=None, **args):
self.update_graph(attributes, inside_colors, **args)
def update_graph(self, attributes=None, inside_colors=None, **_):
self.graph.zoomStack = []
if not self.graph.have_data:
return
if attributes and len(attributes) == 2:
self.attr_x, self.attr_y = attributes
self.graph.update_data(self.attr_x, self.attr_y)
def saveSettings(self):
OWWidget.saveSettings(self)
# self.vizrank.saveSettings()
"""
def auto_selection_changed(self):
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
if self.auto_send_selection:
self.send_selection()
"""
def selection_changed(self):
if self.auto_send_selection:
self.send_selection()
else:
self.selection_dirty = True
def send_selection(self):
self.selection_dirty = False
selection = self.graph.get_selection()
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
self.send("Other Data", unselected)
def set_colors(self):
dlg = self.create_color_dialog()
if dlg.exec_():
self.color_settings = dlg.getColorSchemas()
self.selected_schema_index = dlg.selectedSchemaIndex
self.graph.continuous_palette = dlg.getContinuousPalette(
"contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
self.update_graph()
def create_color_dialog(self):
c = ColorPaletteDlg(self, "Color Palette")
c.createDiscretePalette("discPalette", "Discrete Palette")
c.createContinuousPalette("contPalette", "Continuous Palette")
c.setColorSchemas(self.color_settings, self.selected_schema_index)
return c
def closeEvent(self, ce):
# self.vizrank.close()
super().closeEvent(ce)
def sendReport(self):
self.startReport("%s [%s - %s]" %
(self.windowTitle(), self.attr_x, self.attr_y))
self.reportSettings(
"Visualized attributes",
[("X", self.attr_x), ("Y", self.attr_y), self.graph.attr_color and
("Color", self.graph.attr_color), self.graph.attr_label and
("Label", self.graph.attr_label), self.graph.attr_shape and
("Shape", self.graph.attr_shape), self.graph.attr_size and
("Size", self.graph.attr_size)])
self.reportSettings("Settings",
[("Symbol size", self.graph.point_width),
("Opacity", self.graph.alpha_value),
("Jittering", self.graph.jitter_size),
("Jitter continuous attributes",
gui.YesNo[self.graph.jitter_continuous])])
self.reportSection("Graph")
self.reportImage(self.graph.save_to_file, QSize(400, 400))
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axisfont = font_resize(self.font(), 0.8, minsize=11)
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setTickFont(axisfont)
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setTickFont(axisfont)
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
self.selection_dirty = False
common_options = {
"labelWidth": 50,
"orientation": "horizontal",
"sendSelectedValue": True,
"valueType": str
}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea,
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset, g.Spacing, g.SendSelection
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.SendSelection].clicked.connect(self.send_selection)
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
cb_auto_send = gui.checkBox(box, self, 'auto_send_selection',
'Send selection on change')
gui.setStopper(self, buttons[g.SendSelection], cb_auto_send,
"selection_dirty", self.send_selection)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
dlg.deleteLater()
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction("Zoom in", self, triggered=lambda: zoom(1.25))
zoom_in.setShortcuts([
QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))
])
zoom_out = QtGui.QAction("Zoom out",
self,
shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25))
zoom_fit = QtGui.QAction("Fit in view",
self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier
| Qt.Key_0),
triggered=fit_to_view)
self.addActions([zoom_in, zoom_out, zoom_fit])
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QPen(self.palette().color(QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
#: Remember the saved state to restore
self.__pending_selection_restore = self.selection_group
self.selection_group = None
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
dmod = DomainModel
self.xy_model = DomainModel(dmod.MIXED, valid_types=dmod.PRIMITIVE)
self.cb_attr_x = gui.comboBox(
box, self, "attr_x", label="Axis x:", callback=self.update_attr,
model=self.xy_model, **common_options)
self.cb_attr_y = gui.comboBox(
box, self, "attr_y", label="Axis y:", callback=self.update_attr,
model=self.xy_model, **common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
g = self.graph.gui
g.add_widgets([g.JitterSizeSlider,
g.JitterNumericValues], box)
self.sampling = gui.auto_commit(
self.controlArea, self, "auto_sample", "Sample", box="Sampling",
callback=self.switch_sampling, commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
g.point_properties_box(self.controlArea)
self.models = [self.xy_model] + g.points_models
box_plot_prop = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend,
g.ShowGridLines,
g.ToolTipShowsAll,
g.ClassDensity,
g.RegressionLine,
g.LabelOnlySelected], box_plot_prop)
self.graph.box_zoom_select(self.controlArea)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
self.graph.zoom_actions(self)
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QPen(self.palette().color(QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(labelWidth=50,
orientation=Qt.Horizontal,
sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
dmod = DomainModel
self.xy_model = DomainModel(dmod.MIXED, valid_types=dmod.PRIMITIVE)
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
model=self.xy_model,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.update_attr,
model=self.xy_model,
**common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
g = self.graph.gui
g.add_widgets([g.JitterSizeSlider, g.JitterNumericValues], box)
self.sampling = gui.auto_commit(self.controlArea,
self,
"auto_sample",
"Sample",
box="Sampling",
callback=self.switch_sampling,
commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
g.point_properties_box(self.controlArea)
self.models = [self.xy_model] + g.points_models
box_plot_prop = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([
g.ShowLegend, g.ShowGridLines, g.ToolTipShowsAll, g.ClassDensity,
g.RegressionLine, g.LabelOnlySelected
], box_plot_prop)
self.graph.box_zoom_select(self.controlArea)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
self.graph.zoom_actions(self)
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = {
"labelWidth": 50,
"orientation": "horizontal",
"sendSelectedValue": True,
"valueType": str
}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.update_attr,
**common_options)
self.vizrank = self.VizRank(self)
vizrank_box = gui.widgetBox(box, None, orientation='horizontal')
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank_button = gui.button(
vizrank_box,
self,
"Rank projections",
callback=self.vizrank.reshow,
tooltip="Find projections with good class separation")
self.vizrank_button.setEnabled(False)
gui.separator(box)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
self.sampling = gui.auto_commit(self.controlArea,
self,
"auto_sample",
"Sample",
box="Sampling",
callback=self.switch_sampling,
commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(box,
self,
value='graph.class_density',
label='Show class density',
callback=self.update_density)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.widgetBox(self.controlArea, "Zoom/Select"),
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection")
self.inline_graph_report()
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction("Zoom in", self, triggered=lambda: zoom(1.25))
zoom_in.setShortcuts([
QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))
])
zoom_out = QtGui.QAction("Zoom out",
self,
shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25))
zoom_fit = QtGui.QAction("Fit in view",
self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier
| Qt.Key_0),
triggered=fit_to_view)
self.addActions([zoom_in, zoom_out, zoom_fit])
class OWScatterPlot(OWWidget):
name = 'Scatter Plot'
description = "Interactive scatter plot visualization with " \
"intelligent data visualization enhancements."
icon = "icons/ScatterPlot.svg"
priority = 210
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table, Default), ("Other Data", Table),
("Features", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
auto_sample = Setting(True)
toolbar_selection = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
graph_name = "graph.plot_widget.plotItem"
class Information(OWWidget.Information):
sampled_sql = Msg("Large SQL table; showing a sample.")
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(labelWidth=50,
orientation=Qt.Horizontal,
sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.update_attr,
**common_options)
self.vizrank = ScatterPlotVizRank(self)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank_button_tooltip = "Find informative projections"
self.vizrank_button = gui.button(vizrank_box,
self,
"Score Plots",
callback=self.vizrank.reshow,
tooltip=self.vizrank_button_tooltip,
enabled=False)
self.vizrank.pairSelected.connect(self.set_attr)
gui.separator(box)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
self.sampling = gui.auto_commit(self.controlArea,
self,
"auto_sample",
"Sample",
box="Sampling",
callback=self.switch_sampling,
commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
box = gui.vBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
box = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(box,
self,
value='graph.class_density',
label='Show class density',
callback=self.update_density)
gui.checkBox(box,
self,
'graph.label_only_selected',
'Label only selected points',
callback=self.graph.update_labels)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.vBox(self.controlArea, "Zoom/Select"),
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction("Zoom in", self, triggered=lambda: zoom(1.25))
zoom_in.setShortcuts([
QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))
])
zoom_out = QtGui.QAction("Zoom out",
self,
shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25))
zoom_fit = QtGui.QAction("Fit in view",
self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier
| Qt.Key_0),
triggered=fit_to_view)
self.addActions([zoom_in, zoom_out, zoom_fit])
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.update_graph()
def set_data(self, data):
self.Information.sampled_sql.clear()
self.__timer.stop()
self.sampling.setVisible(False)
self.sql_data = None
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.Information.sampled_sql()
self.sql_data = data
data_sample = data.sample_time(0.8, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.sampling.setVisible(True)
if self.auto_sample:
self.__timer.start()
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = (self.data and data and data.domain.checksum()
== self.data.domain.checksum())
self.data = data
self.data_metas_X = self.move_primitive_metas_to_X(data)
if not same_domain:
self.init_attr_values()
self.vizrank.initialize()
self.vizrank_button.setEnabled(
self.data is not None and self.data.domain.class_var is not None
and len(self.data.domain.attributes) > 1 and len(self.data) > 1)
if self.data is not None and self.data.domain.class_var is None \
and len(self.data.domain.attributes) > 1 and len(self.data) > 1:
self.vizrank_button.setToolTip(
"Data with a class variable is required.")
else:
self.vizrank_button.setToolTip(self.vizrank_button_tooltip)
self.openContext(self.data)
def add_data(self, time=0.4):
if self.data and len(self.data) > 2000:
return self.__timer.stop()
data_sample = self.sql_data.sample_time(time, no_cache=True)
if data_sample:
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.data = Table.concatenate((self.data, data), axis=0)
self.data_metas_X = self.move_primitive_metas_to_X(self.data)
self.handleNewSignals()
def switch_sampling(self):
self.__timer.stop()
if self.auto_sample and self.sql_data:
self.add_data()
self.__timer.start()
def move_primitive_metas_to_X(self, data):
if data is not None:
new_attrs = [
a for a in data.domain.attributes + data.domain.metas
if a.is_primitive()
]
new_metas = [m for m in data.domain.metas if not m.is_primitive()]
data = Table.from_table(
Domain(new_attrs, data.domain.class_vars, new_metas), data)
return data
def set_subset_data(self, subset_data):
self.warning()
if isinstance(subset_data, SqlTable):
if subset_data.approx_len() < AUTO_DL_LIMIT:
subset_data = Table(subset_data)
else:
self.warning("Data subset does not support large Sql tables")
subset_data = None
self.subset_data = self.move_primitive_metas_to_X(subset_data)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data_metas_X, self.subset_data)
if self.attribute_selection_list and \
all(attr in self.graph.data_domain
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0].name
self.attr_y = self.attribute_selection_list[1].name
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.unconditional_commit()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.attr_x = None
self.cb_attr_y.clear()
self.attr_y = None
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.graph.attr_color = None
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.graph.attr_label = None
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.graph.attr_shape = None
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
self.graph.attr_size = None
if not self.data:
return
for var in self.data.domain.metas:
if not var.is_primitive():
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if attr.is_discrete:
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
for var in self.data.domain.metas:
if var.is_primitive():
self.cb_attr_x.addItem(self.icons[var], var.name)
self.cb_attr_y.addItem(self.icons[var], var.name)
self.cb_attr_color.addItem(self.icons[var], var.name)
if var.is_discrete:
self.cb_attr_shape.addItem(self.icons[var], var.name)
else:
self.cb_attr_size.addItem(self.icons[var], var.name)
self.cb_attr_label.addItem(self.icons[var], var.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def set_attr(self, attr_x, attr_y):
self.attr_x, self.attr_y = attr_x.name, attr_y.name
self.update_attr()
def update_attr(self):
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.send_features()
def update_colors(self):
self.graph.update_colors()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_graph(self, reset_view=True, **_):
self.graph.zoomStack = []
if not self.graph.have_data:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
self.send_data()
def send_data(self):
selected = unselected = None
# TODO: Implement selection for sql data
if isinstance(self.data, SqlTable):
selected = unselected = self.data
elif self.data is not None:
selection = self.graph.get_selection()
if len(selection) == 0:
self.send("Selected Data", None)
self.send("Other Data", self.data)
return
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
if unselected is None or len(unselected) == 0:
self.send("Other Data", None)
else:
self.send("Other Data", unselected)
def send_features(self):
features = None
if self.attr_x or self.attr_y:
dom = Domain([], metas=(StringVariable(name="feature"), ))
features = Table(dom, [[self.attr_x], [self.attr_y]])
features.name = "Features"
self.send("Features", features)
def commit(self):
self.send_data()
self.send_features()
def closeEvent(self, ce):
self.vizrank.close()
super().closeEvent(ce)
def hideEvent(self, he):
self.vizrank.hide()
super().hideEvent(he)
def get_widget_name_extension(self):
if self.data is not None:
return "{} vs {}".format(self.combo_value(self.cb_attr_x),
self.combo_value(self.cb_attr_y))
def send_report(self):
disc_attr = False
if self.data:
domain = self.data.domain
disc_attr = domain[self.attr_x].is_discrete or \
domain[self.attr_y].is_discrete
caption = report.render_items_vert(
(("Color", self.combo_value(self.cb_attr_color)),
("Label", self.combo_value(self.cb_attr_label)),
("Shape", self.combo_value(self.cb_attr_shape)),
("Size", self.combo_value(self.cb_attr_size)),
("Jittering", (self.graph.jitter_continuous or disc_attr)
and self.graph.jitter_size)))
self.report_plot()
if caption:
self.report_caption(caption)
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
class OWScatterPlot(OWWidget):
name = 'Scatter Plot'
description = 'Scatter plot visualization.'
icon = "icons/ScatterPlot.svg"
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table),
("Other Data", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
toolbar_selection = Setting(0)
color_settings = Setting(None)
selected_schema_index = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
zoom_select_toolbar = SettingProvider(ZoomSelectToolbar)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axisfont = font_resize(self.font(), 0.8, minsize=11)
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
common_options = {"labelWidth": 50, "orientation": "horizontal",
"sendSelectedValue": True, "valueType": str}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box, self, "attr_x", label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box, self, "attr_y", label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter continuous values', callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(
box, self, "graph.attr_color", label="Color:",
emptyString="(Same color)", callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(
box, self, "graph.attr_label", label="Label:",
emptyString="(No labels)", callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(
box, self, "graph.attr_shape", label="Shape:",
emptyString="(Same shape)", callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(
box, self, "graph.attr_size", label="Size:",
emptyString="(Same size)", callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea, nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
dlg.deleteLater()
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction(
"Zoom in", self, triggered=lambda: zoom(1.25)
)
zoom_in.setShortcuts([QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))])
zoom_out = QtGui.QAction(
"Zoom out", self, shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25)
)
zoom_fit = QtGui.QAction(
"Fit in view", self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier | Qt.Key_0),
triggered=fit_to_view
)
self.addActions([zoom_in, zoom_out, zoom_fit])
# self.vizrank = OWVizRank(self, self.signalManager, self.graph,
# orngVizRank.SCATTERPLOT, "ScatterPlot")
# self.optimizationDlg = self.vizrank
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.major_graph_update()
def set_data(self, data):
if type(data) == SqlTable and data.approx_len() > LARGE_TABLE:
data = data.sample_time(DEFAULT_SAMPLE_TIME)
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = \
self.data and data and \
data.domain.checksum() == self.data.domain.checksum()
self.data = data
# TODO: adapt scatter plot to work on SqlTables (avoid use of X and Y)
if isinstance(self.data, SqlTable):
self.data.download_data()
# self.vizrank.clearResults()
if not same_domain:
self.init_attr_values()
self.openContext(self.data)
def set_subset_data(self, subset_data):
self.subset_data = subset_data
# self.vizrank.clearArguments()
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data, self.subset_data)
# self.vizrank.resetDialog()
if self.attribute_selection_list and \
all(attr.name in self.graph.attribute_name_index
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0].name
self.attr_y = self.attribute_selection_list[1].name
self.attribute_selection_list = None
self.update_graph()
self.unconditional_commit()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
# Callback from VizRank dialog
def show_selected_attributes(self):
val = self.vizrank.get_selected_projection()
if not val:
return
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
self.major_graph_update(val[3])
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.cb_attr_y.clear()
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
if not self.data:
return
for var in self.data.domain.metas:
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if attr.is_discrete:
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def major_graph_update(self, attributes=None, inside_colors=None, **args):
self.update_graph(attributes, inside_colors, **args)
def update_graph(self, attributes=None, inside_colors=None, **_):
self.graph.zoomStack = []
if not self.graph.have_data:
return
if attributes and len(attributes) == 2:
self.attr_x, self.attr_y = attributes
self.graph.update_data(self.attr_x, self.attr_y)
def saveSettings(self):
OWWidget.saveSettings(self)
# self.vizrank.saveSettings()
def selection_changed(self):
self.commit()
def commit(self):
selected = unselected = None
# TODO: Implement selection for sql data
if isinstance(self.data, SqlTable):
selected = unselected = self.data
elif self.data is not None:
selection = self.graph.get_selection()
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
self.send("Other Data", unselected)
def set_colors(self):
dlg = self.create_color_dialog()
if dlg.exec_():
self.color_settings = dlg.getColorSchemas()
self.selected_schema_index = dlg.selectedSchemaIndex
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
self.update_graph()
def create_color_dialog(self):
c = ColorPaletteDlg(self, "Color Palette")
c.createDiscretePalette("discPalette", "Discrete Palette")
c.createContinuousPalette("contPalette", "Continuous Palette")
c.setColorSchemas(self.color_settings, self.selected_schema_index)
return c
def closeEvent(self, ce):
# self.vizrank.close()
super().closeEvent(ce)
def sendReport(self):
self.startReport(
"%s [%s - %s]" % (self.windowTitle(), self.attr_x, self.attr_y))
self.reportSettings(
"Visualized attributes",
[("X", self.attr_x),
("Y", self.attr_y),
self.graph.attr_color and ("Color", self.graph.attr_color),
self.graph.attr_label and ("Label", self.graph.attr_label),
self.graph.attr_shape and ("Shape", self.graph.attr_shape),
self.graph.attr_size and ("Size", self.graph.attr_size)])
self.reportSettings(
"Settings",
[("Symbol size", self.graph.point_width),
("Opacity", self.graph.alpha_value),
("Jittering", self.graph.jitter_size),
("Jitter continuous attributes",
gui.YesNo[self.graph.jitter_continuous])])
self.reportSection("Graph")
self.reportImage(self.graph.save_to_file, QSize(400, 400))
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
self.selection_dirty = False
common_options = {"labelWidth": 50, "orientation": "horizontal",
"sendSelectedValue": True, "valueType": str}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box, self, "attr_x", label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box, self, "attr_y", label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter continuous values', callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(
box, self, "graph.attr_color", label="Color:",
emptyString="(Same color)", callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(
box, self, "graph.attr_label", label="Label:",
emptyString="(No labels)", callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(
box, self, "graph.attr_shape", label="Shape:",
emptyString="(Same shape)", callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(
box, self, "graph.attr_size", label="Size:",
emptyString="(Same size)", callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea, nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset, g.Spacing, g.SendSelection]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.SendSelection].clicked.connect(self.send_selection)
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
cb_auto_send = gui.checkBox(
box, self, 'auto_send_selection', 'Send selection on change')
gui.setStopper(self, buttons[g.SendSelection], cb_auto_send,
"selection_dirty", self.send_selection)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
self.mainArea.setMinimumWidth(700)
self.mainArea.setMinimumHeight(550)
class OWScatterPlot(OWWidget):
name = 'Scatter plot'
description = 'Scatter plot visualization'
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table),
("Other Data", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
toolbar_selection = Setting(0)
color_settings = Setting(None)
selected_schema_index = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
zoom_select_toolbar = SettingProvider(ZoomSelectToolbar)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
self.selection_dirty = False
common_options = {"labelWidth": 50, "orientation": "horizontal",
"sendSelectedValue": True, "valueType": str}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box, self, "attr_x", label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box, self, "attr_y", label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter continuous values', callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(
box, self, "graph.attr_color", label="Color:",
emptyString="(Same color)", callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(
box, self, "graph.attr_label", label="Label:",
emptyString="(No labels)", callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(
box, self, "graph.attr_shape", label="Shape:",
emptyString="(Same shape)", callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(
box, self, "graph.attr_size", label="Size:",
emptyString="(Same size)", callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea, nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset, g.Spacing, g.SendSelection]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.SendSelection].clicked.connect(self.send_selection)
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
cb_auto_send = gui.checkBox(
box, self, 'auto_send_selection', 'Send selection on change')
gui.setStopper(self, buttons[g.SendSelection], cb_auto_send,
"selection_dirty", self.send_selection)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
self.mainArea.setMinimumWidth(700)
self.mainArea.setMinimumHeight(550)
# self.vizrank = OWVizRank(self, self.signalManager, self.graph,
# orngVizRank.SCATTERPLOT, "ScatterPlot")
# self.optimizationDlg = self.vizrank
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.major_graph_update()
def set_data(self, data: Orange.data.Table):
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = \
self.data and data and \
data.domain.checksum() == self.data.domain.checksum()
self.data = data
# TODO: adapt scatter plot to work on SqlTables (avoid use of X and Y)
if isinstance(self.data, SqlTable):
self.data.X = np.empty((len(self.data),
len(self.data.domain.attributes)))
self.data.Y = np.empty((len(self.data),
len(self.data.domain.class_vars)))
for i, row in enumerate(data):
self.data.X[i] = [row[attr]
for attr in self.data.domain.attributes]
if self.data.domain.class_vars:
self.data.Y[i] = [row[cv]
for cv in self.data.domain.class_vars]
# self.vizrank.clearResults()
if not same_domain:
self.init_attr_values()
self.openContext(self.data)
def set_subset_data(self, subset_data):
self.subset_data = subset_data
# self.vizrank.clearArguments()
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.set_data(self.data, self.subset_data)
# self.vizrank.resetDialog()
if self.attribute_selection_list and \
all(attr in self.graph.attribute_name_index
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0]
self.attr_y = self.attribute_selection_list[1]
self.attribute_selection_list = None
self.update_graph()
self.send_selection()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
# Callback from VizRank dialog
def show_selected_attributes(self):
val = self.vizrank.get_selected_projection()
if not val:
return
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
self.major_graph_update(val[3])
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.cb_attr_y.clear()
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
if not self.data:
return
for var in self.data.domain.metas:
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if isinstance(attr, DiscreteVariable):
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def major_graph_update(self, attributes=None, inside_colors=None, **args):
self.update_graph(attributes, inside_colors, **args)
def update_graph(self, attributes=None, inside_colors=None, **_):
self.graph.zoomStack = []
if not self.graph.have_data:
return
if attributes and len(attributes) == 2:
self.attr_x, self.attr_y = attributes
self.graph.update_data(self.attr_x, self.attr_y)
def saveSettings(self):
OWWidget.saveSettings(self)
# self.vizrank.saveSettings()
"""
def auto_selection_changed(self):
self.zoom_select_toolbar.buttons[OWPlotGUI.SendSelection].setEnabled(
not self.auto_send_selection)
if self.auto_send_selection:
self.send_selection()
"""
def selection_changed(self):
if self.auto_send_selection:
self.send_selection()
else:
self.selection_dirty = True
def send_selection(self):
self.selection_dirty = False
selection = self.graph.get_selection()
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
self.send("Other Data", unselected)
def set_colors(self):
dlg = self.create_color_dialog()
if dlg.exec_():
self.color_settings = dlg.getColorSchemas()
self.selected_schema_index = dlg.selectedSchemaIndex
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
self.update_graph()
def create_color_dialog(self):
c = ColorPaletteDlg(self, "Color Palette")
c.createDiscretePalette("discPalette", "Discrete Palette")
c.createContinuousPalette("contPalette", "Continuous Palette")
c.setColorSchemas(self.color_settings, self.selected_schema_index)
return c
def closeEvent(self, ce):
# self.vizrank.close()
super().closeEvent(ce)
def sendReport(self):
self.startReport(
"%s [%s - %s]" % (self.windowTitle(), self.attr_x, self.attr_y))
self.reportSettings(
"Visualized attributes",
[("X", self.attr_x),
("Y", self.attr_y),
self.graph.attr_color and ("Color", self.graph.attr_color),
self.graph.attr_label and ("Label", self.graph.attr_label),
self.graph.attr_shape and ("Shape", self.graph.attr_shape),
self.graph.attr_size and ("Size", self.graph.attr_size)])
self.reportSettings(
"Settings",
[("Symbol size", self.graph.point_width),
("Opacity", self.graph.alpha_value),
("Jittering", self.graph.jitter_size),
("Jitter continuous attributes",
gui.YesNo[self.graph.jitter_continuous])])
self.reportSection("Graph")
self.reportImage(self.graph.save_to_file, QSize(400, 400))
class OWScatterPlot(OWWidget):
"""Scatterplot visualization with explorative analysis and intelligent
data visualization enhancements."""
name = 'Scatter Plot'
description = "Interactive scatter plot visualization with " \
"intelligent data visualization enhancements."
icon = "icons/ScatterPlot.svg"
priority = 140
class Inputs:
data = Input("Data", Table, default=True)
data_subset = Input("Data Subset", Table)
features = Input("Features", AttributeList)
class Outputs:
selected_data = Output("Selected Data", Table, default=True)
annotated_data = Output(ANNOTATED_DATA_SIGNAL_NAME, Table)
features = Output("Features", Table, dynamic=False)
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
auto_sample = Setting(True)
toolbar_selection = Setting(0)
attr_x = ContextSetting(None)
attr_y = ContextSetting(None)
selection = Setting(None, schema_only=True)
graph = SettingProvider(OWScatterPlotGraph)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
graph_name = "graph.plot_widget.plotItem"
class Information(OWWidget.Information):
sampled_sql = Msg("Large SQL table; showing a sample.")
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QPen(self.palette().color(QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
dmod = DomainModel
self.xy_model = DomainModel(dmod.MIXED, valid_types=dmod.PRIMITIVE)
self.cb_attr_x = gui.comboBox(
box, self, "attr_x", label="Axis x:", callback=self.update_attr,
model=self.xy_model, **common_options)
self.cb_attr_y = gui.comboBox(
box, self, "attr_y", label="Axis y:", callback=self.update_attr,
model=self.xy_model, **common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter numeric values', callback=self.reset_graph_data)
self.sampling = gui.auto_commit(
self.controlArea, self, "auto_sample", "Sample", box="Sampling",
callback=self.switch_sampling, commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
g = self.graph.gui
g.point_properties_box(self.controlArea)
self.models = [self.xy_model] + g.points_models
box = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(
box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(
box, self, value='graph.class_density', label='Show class density',
callback=self.update_density)
self.cb_reg_line = gui.checkBox(
box, self, value='graph.show_reg_line',
label='Show regression line', callback=self.update_regression_line)
gui.checkBox(
box, self, 'graph.label_only_selected',
'Label only selected points', callback=self.graph.update_labels)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.vBox(self.controlArea, "Zoom/Select"), nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QAction(
"Zoom in", self, triggered=lambda: zoom(1.25)
)
zoom_in.setShortcuts([QKeySequence(QKeySequence.ZoomIn),
QKeySequence(self.tr("Ctrl+="))])
zoom_out = QAction(
"Zoom out", self, shortcut=QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25)
)
zoom_fit = QAction(
"Fit in view", self,
shortcut=QKeySequence(Qt.ControlModifier | Qt.Key_0),
triggered=fit_to_view
)
self.addActions([zoom_in, zoom_out, zoom_fit])
def keyPressEvent(self, event):
super().keyPressEvent(event)
self.graph.update_tooltip(event.modifiers())
def keyReleaseEvent(self, event):
super().keyReleaseEvent(event)
self.graph.update_tooltip(event.modifiers())
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
if self.data is not None:
self.graph.rescale_data()
self.update_graph()
@Inputs.data
def set_data(self, data):
self.clear_messages()
self.Information.sampled_sql.clear()
self.__timer.stop()
self.sampling.setVisible(False)
self.sql_data = None
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.Information.sampled_sql()
self.sql_data = data
data_sample = data.sample_time(0.8, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.sampling.setVisible(True)
if self.auto_sample:
self.__timer.start()
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = (self.data and data and
data.domain.checksum() == self.data.domain.checksum())
self.data = data
self.data_metas_X = self.move_primitive_metas_to_X(data)
if not same_domain:
self.init_attr_values()
self.vizrank.initialize()
self.vizrank.attrs = self.data.domain.attributes if self.data is not None else []
self.vizrank_button.setEnabled(
self.data is not None and not self.data.is_sparse() and
self.data.domain.class_var is not None and
len(self.data.domain.attributes) > 1 and len(self.data) > 1)
if self.data is not None and self.data.domain.class_var is None \
and len(self.data.domain.attributes) > 1 and len(self.data) > 1:
self.vizrank_button.setToolTip(
"Data with a class variable is required.")
else:
self.vizrank_button.setToolTip("")
self.openContext(self.data)
def findvar(name, iterable):
"""Find a Orange.data.Variable in `iterable` by name"""
for el in iterable:
if isinstance(el, Orange.data.Variable) and el.name == name:
return el
return None
# handle restored settings from < 3.3.9 when attr_* were stored
# by name
if isinstance(self.attr_x, str):
self.attr_x = findvar(self.attr_x, self.xy_model)
if isinstance(self.attr_y, str):
self.attr_y = findvar(self.attr_y, self.xy_model)
if isinstance(self.graph.attr_label, str):
self.graph.attr_label = findvar(
self.graph.attr_label, self.graph.gui.label_model)
if isinstance(self.graph.attr_color, str):
self.graph.attr_color = findvar(
self.graph.attr_color, self.graph.gui.color_model)
if isinstance(self.graph.attr_shape, str):
self.graph.attr_shape = findvar(
self.graph.attr_shape, self.graph.gui.shape_model)
if isinstance(self.graph.attr_size, str):
self.graph.attr_size = findvar(
self.graph.attr_size, self.graph.gui.size_model)
def add_data(self, time=0.4):
if self.data and len(self.data) > 2000:
return self.__timer.stop()
data_sample = self.sql_data.sample_time(time, no_cache=True)
if data_sample:
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.data = Table.concatenate((self.data, data), axis=0)
self.data_metas_X = self.move_primitive_metas_to_X(self.data)
self.handleNewSignals()
def switch_sampling(self):
self.__timer.stop()
if self.auto_sample and self.sql_data:
self.add_data()
self.__timer.start()
def move_primitive_metas_to_X(self, data):
if data is not None:
new_attrs = [a for a in data.domain.attributes + data.domain.metas
if a.is_primitive()]
new_metas = [m for m in data.domain.metas if not m.is_primitive()]
new_domain = Domain(new_attrs, data.domain.class_vars, new_metas)
data = data.transform(new_domain)
return data
@Inputs.data_subset
def set_subset_data(self, subset_data):
self.warning()
if isinstance(subset_data, SqlTable):
if subset_data.approx_len() < AUTO_DL_LIMIT:
subset_data = Table(subset_data)
else:
self.warning("Data subset does not support large Sql tables")
subset_data = None
self.subset_data = self.move_primitive_metas_to_X(subset_data)
self.controls.graph.alpha_value.setEnabled(subset_data is None)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.sparse_to_dense(self.data_metas_X),
self.sparse_to_dense(self.subset_data))
if self.attribute_selection_list and self.graph.domain and \
all(attr in self.graph.domain
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0]
self.attr_y = self.attribute_selection_list[1]
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.cb_reg_line.setEnabled(self.graph.can_draw_regresssion_line())
self.apply_selection()
self.unconditional_commit()
def prepare_data(self):
"""
Only when dealing with sparse matrices.
GH-2152
"""
self.graph.new_data(self.sparse_to_dense(self.data_metas_X),
self.sparse_to_dense(self.subset_data),
new=False)
def sparse_to_dense(self, input_data=None):
if input_data is None or not input_data.is_sparse():
return input_data
keys = []
attrs = {self.attr_x,
self.attr_y,
self.graph.attr_color,
self.graph.attr_shape,
self.graph.attr_size,
self.graph.attr_label}
for i, attr in enumerate(input_data.domain):
if attr in attrs:
keys.append(i)
new_domain = input_data.domain.select_columns(keys)
dmx = input_data.transform(new_domain)
dmx.X = dmx.X.toarray()
# TODO: remove once we make sure Y is always dense.
if sp.issparse(dmx.Y):
dmx.Y = dmx.Y.toarray()
return dmx
def apply_selection(self):
"""Apply selection saved in workflow."""
if self.data is not None and self.selection is not None:
self.graph.selection = np.zeros(len(self.data), dtype=np.uint8)
self.selection = [x for x in self.selection if x < len(self.data)]
self.graph.selection[self.selection] = 1
self.graph.update_colors(keep_colors=True)
@Inputs.features
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
domain = self.data and self.data.domain
for model in self.models:
model.set_domain(domain)
self.attr_x = self.xy_model[0] if self.xy_model else None
self.attr_y = self.xy_model[1] if len(self.xy_model) >= 2 \
else self.attr_x
self.graph.attr_color = domain and self.data.domain.class_var or None
self.graph.attr_shape = None
self.graph.attr_size = None
self.graph.attr_label = None
def set_attr(self, attr_x, attr_y):
self.attr_x, self.attr_y = attr_x, attr_y
self.update_attr()
def update_attr(self):
self.prepare_data()
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.cb_reg_line.setEnabled(self.graph.can_draw_regresssion_line())
self.send_features()
def update_colors(self):
self.prepare_data()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_regression_line(self):
self.update_graph(reset_view=False)
def update_graph(self, reset_view=True, **_):
self.graph.zoomStack = []
if self.graph.data is None:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
self.send_data()
@staticmethod
def create_groups_table(data, selection):
if data is None:
return None
names = [var.name for var in data.domain.variables + data.domain.metas]
name = get_next_name(names, "Selection group")
metas = data.domain.metas + (
DiscreteVariable(
name,
["Unselected"] + ["G{}".format(i + 1)
for i in range(np.max(selection))]),
)
domain = Domain(data.domain.attributes, data.domain.class_vars, metas)
table = data.transform(domain)
table.metas[:, len(data.domain.metas):] = \
selection.reshape(len(data), 1)
return table
def send_data(self):
selected = None
selection = None
# TODO: Implement selection for sql data
graph = self.graph
if isinstance(self.data, SqlTable):
selected = self.data
elif self.data is not None:
selection = graph.get_selection()
if len(selection) > 0:
selected = self.data[selection]
if graph.selection is not None and np.max(graph.selection) > 1:
annotated = self.create_groups_table(self.data, graph.selection)
else:
annotated = create_annotated_table(self.data, selection)
self.Outputs.selected_data.send(selected)
self.Outputs.annotated_data.send(annotated)
# Store current selection in a setting that is stored in workflow
if self.selection is not None and len(selection):
self.selection = list(selection)
def send_features(self):
features = None
if self.attr_x or self.attr_y:
dom = Domain([], metas=(StringVariable(name="feature"),))
features = Table(dom, [[self.attr_x], [self.attr_y]])
features.name = "Features"
self.Outputs.features.send(features)
def commit(self):
self.send_data()
self.send_features()
def get_widget_name_extension(self):
if self.data is not None:
return "{} vs {}".format(self.attr_x.name, self.attr_y.name)
def send_report(self):
if self.data is None:
return
def name(var):
return var and var.name
caption = report.render_items_vert((
("Color", name(self.graph.attr_color)),
("Label", name(self.graph.attr_label)),
("Shape", name(self.graph.attr_shape)),
("Size", name(self.graph.attr_size)),
("Jittering", (self.attr_x.is_discrete or
self.attr_y.is_discrete or
self.graph.jitter_continuous) and
self.graph.jitter_size)))
self.report_plot()
if caption:
self.report_caption(caption)
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
class OWScatterPlot(OWWidget):
"""Scatterplot visualization with explorative analysis and intelligent
data visualization enhancements."""
name = 'Scatter Plot'
description = "Interactive scatter plot visualization with " \
"intelligent data visualization enhancements."
icon = "icons/ScatterPlot.svg"
priority = 140
class Inputs:
data = Input("Data", Table, default=True)
data_subset = Input("Data Subset", Table)
features = Input("Features", AttributeList)
class Outputs:
selected_data = Output("Selected Data", Table, default=True)
annotated_data = Output(ANNOTATED_DATA_SIGNAL_NAME, Table)
features = Output("Features", AttributeList, dynamic=False)
settings_version = 2
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
auto_sample = Setting(True)
toolbar_selection = Setting(0)
attr_x = ContextSetting(None)
attr_y = ContextSetting(None)
selection_group = Setting(None, schema_only=True)
graph = SettingProvider(OWScatterPlotGraph)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
graph_name = "graph.plot_widget.plotItem"
class Information(OWWidget.Information):
sampled_sql = Msg("Large SQL table; showing a sample.")
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QPen(self.palette().color(QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(labelWidth=50,
orientation=Qt.Horizontal,
sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
dmod = DomainModel
self.xy_model = DomainModel(dmod.MIXED, valid_types=dmod.PRIMITIVE)
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
model=self.xy_model,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.update_attr,
model=self.xy_model,
**common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
g = self.graph.gui
g.add_widgets([g.JitterSizeSlider, g.JitterNumericValues], box)
self.sampling = gui.auto_commit(self.controlArea,
self,
"auto_sample",
"Sample",
box="Sampling",
callback=self.switch_sampling,
commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
g.point_properties_box(self.controlArea)
self.models = [self.xy_model] + g.points_models
box_plot_prop = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([
g.ShowLegend, g.ShowGridLines, g.ToolTipShowsAll, g.ClassDensity,
g.RegressionLine, g.LabelOnlySelected
], box_plot_prop)
self.graph.box_zoom_select(self.controlArea)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
self.graph.zoom_actions(self)
def keyPressEvent(self, event):
super().keyPressEvent(event)
self.graph.update_tooltip(event.modifiers())
def keyReleaseEvent(self, event):
super().keyReleaseEvent(event)
self.graph.update_tooltip(event.modifiers())
def reset_graph_data(self, *_):
if self.data is not None:
self.graph.rescale_data()
self.update_graph()
@Inputs.data
def set_data(self, data):
self.clear_messages()
self.Information.sampled_sql.clear()
self.__timer.stop()
self.sampling.setVisible(False)
self.sql_data = None
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.Information.sampled_sql()
self.sql_data = data
data_sample = data.sample_time(0.8, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.sampling.setVisible(True)
if self.auto_sample:
self.__timer.start()
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = (self.data and data and data.domain.checksum()
== self.data.domain.checksum())
self.data = data
self.data_metas_X = self.move_primitive_metas_to_X(data)
if not same_domain:
self.init_attr_values()
self.vizrank.initialize()
self.vizrank.attrs = self.data.domain.attributes if self.data is not None else []
self.vizrank_button.setEnabled(
self.data is not None and not self.data.is_sparse()
and self.data.domain.class_var is not None
and len(self.data.domain.attributes) > 1 and len(self.data) > 1)
if self.data is not None and self.data.domain.class_var is None \
and len(self.data.domain.attributes) > 1 and len(self.data) > 1:
self.vizrank_button.setToolTip(
"Data with a class variable is required.")
else:
self.vizrank_button.setToolTip("")
self.openContext(self.data)
def findvar(name, iterable):
"""Find a Orange.data.Variable in `iterable` by name"""
for el in iterable:
if isinstance(el, Orange.data.Variable) and el.name == name:
return el
return None
# handle restored settings from < 3.3.9 when attr_* were stored
# by name
if isinstance(self.attr_x, str):
self.attr_x = findvar(self.attr_x, self.xy_model)
if isinstance(self.attr_y, str):
self.attr_y = findvar(self.attr_y, self.xy_model)
if isinstance(self.graph.attr_label, str):
self.graph.attr_label = findvar(self.graph.attr_label,
self.graph.gui.label_model)
if isinstance(self.graph.attr_color, str):
self.graph.attr_color = findvar(self.graph.attr_color,
self.graph.gui.color_model)
if isinstance(self.graph.attr_shape, str):
self.graph.attr_shape = findvar(self.graph.attr_shape,
self.graph.gui.shape_model)
if isinstance(self.graph.attr_size, str):
self.graph.attr_size = findvar(self.graph.attr_size,
self.graph.gui.size_model)
def add_data(self, time=0.4):
if self.data and len(self.data) > 2000:
return self.__timer.stop()
data_sample = self.sql_data.sample_time(time, no_cache=True)
if data_sample:
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.data = Table.concatenate((self.data, data), axis=0)
self.data_metas_X = self.move_primitive_metas_to_X(self.data)
self.handleNewSignals()
def switch_sampling(self):
self.__timer.stop()
if self.auto_sample and self.sql_data:
self.add_data()
self.__timer.start()
def move_primitive_metas_to_X(self, data):
if data is not None:
new_attrs = [
a for a in data.domain.attributes + data.domain.metas
if a.is_primitive()
]
new_metas = [m for m in data.domain.metas if not m.is_primitive()]
new_domain = Domain(new_attrs, data.domain.class_vars, new_metas)
data = data.transform(new_domain)
return data
@Inputs.data_subset
def set_subset_data(self, subset_data):
self.warning()
if isinstance(subset_data, SqlTable):
if subset_data.approx_len() < AUTO_DL_LIMIT:
subset_data = Table(subset_data)
else:
self.warning("Data subset does not support large Sql tables")
subset_data = None
self.subset_data = self.move_primitive_metas_to_X(subset_data)
self.controls.graph.alpha_value.setEnabled(subset_data is None)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data_metas_X, self.subset_data)
if self.attribute_selection_list and self.graph.domain and \
all(attr in self.graph.domain
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0]
self.attr_y = self.attribute_selection_list[1]
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.cb_reg_line.setEnabled(self.graph.can_draw_regresssion_line())
self.apply_selection()
self.unconditional_commit()
def apply_selection(self):
"""Apply selection saved in workflow."""
if self.data is not None and self.selection_group is not None:
self.graph.selection = np.zeros(len(self.data), dtype=np.uint8)
self.selection_group = [
x for x in self.selection_group if x[0] < len(self.data)
]
selection_array = np.array(self.selection_group).T
self.graph.selection[selection_array[0]] = selection_array[1]
self.graph.update_colors(keep_colors=True)
@Inputs.features
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def init_attr_values(self):
domain = self.data and self.data.domain
for model in self.models:
model.set_domain(domain)
self.attr_x = self.xy_model[0] if self.xy_model else None
self.attr_y = self.xy_model[1] if len(self.xy_model) >= 2 \
else self.attr_x
self.graph.attr_color = self.data.domain.class_var if domain else None
self.graph.attr_shape = None
self.graph.attr_size = None
self.graph.attr_label = None
def set_attr(self, attr_x, attr_y):
self.attr_x, self.attr_y = attr_x, attr_y
self.update_attr()
def update_attr(self):
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.cb_reg_line.setEnabled(self.graph.can_draw_regresssion_line())
self.send_features()
def update_colors(self):
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_regression_line(self):
self.update_graph(reset_view=False)
def update_graph(self, reset_view=True, **_):
self.graph.zoomStack = []
if self.graph.data is None:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
self.commit()
def send_data(self):
# TODO: Implement selection for sql data
def _get_selected():
if not len(selection):
return None
return create_groups_table(data, graph.selection, False, "Group")
def _get_annotated():
if graph.selection is not None and np.max(graph.selection) > 1:
return create_groups_table(data, graph.selection)
else:
return create_annotated_table(data, selection)
graph = self.graph
data = self.data
selection = graph.get_selection()
self.Outputs.annotated_data.send(_get_annotated())
self.Outputs.selected_data.send(_get_selected())
# Store current selection in a setting that is stored in workflow
if len(selection):
self.selection_group = list(
zip(selection, graph.selection[selection]))
else:
self.selection_group = None
def send_features(self):
features = [attr for attr in [self.attr_x, self.attr_y] if attr]
self.Outputs.features.send(features or None)
def commit(self):
self.send_data()
self.send_features()
def get_widget_name_extension(self):
if self.data is not None:
return "{} vs {}".format(self.attr_x.name, self.attr_y.name)
def send_report(self):
if self.data is None:
return
def name(var):
return var and var.name
caption = report.render_items_vert(
(("Color", name(self.graph.attr_color)),
("Label", name(self.graph.attr_label)),
("Shape", name(self.graph.attr_shape)),
("Size", name(self.graph.attr_size)),
("Jittering", (self.attr_x.is_discrete or self.attr_y.is_discrete
or self.graph.jitter_continuous)
and self.graph.jitter_size)))
self.report_plot()
if caption:
self.report_caption(caption)
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
@classmethod
def migrate_settings(cls, settings, version):
if version < 2 and "selection" in settings and settings["selection"]:
settings["selection_group"] = [(a, 1)
for a in settings["selection"]]
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QPen(self.palette().color(QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
dmod = DomainModel
self.xy_model = DomainModel(dmod.MIXED, valid_types=dmod.PRIMITIVE)
self.cb_attr_x = gui.comboBox(
box, self, "attr_x", label="Axis x:", callback=self.update_attr,
model=self.xy_model, **common_options)
self.cb_attr_y = gui.comboBox(
box, self, "attr_y", label="Axis y:", callback=self.update_attr,
model=self.xy_model, **common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
gui.valueSlider(
box, self, value='graph.jitter_size', label='Jittering: ',
values=self.jitter_sizes, callback=self.reset_graph_data,
labelFormat=lambda x:
"None" if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(
gui.indentedBox(box), self, 'graph.jitter_continuous',
'Jitter numeric values', callback=self.reset_graph_data)
self.sampling = gui.auto_commit(
self.controlArea, self, "auto_sample", "Sample", box="Sampling",
callback=self.switch_sampling, commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
g = self.graph.gui
g.point_properties_box(self.controlArea)
self.models = [self.xy_model] + g.points_models
box = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(
box, self, value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(
box, self, value='graph.class_density', label='Show class density',
callback=self.update_density)
self.cb_reg_line = gui.checkBox(
box, self, value='graph.show_reg_line',
label='Show regression line', callback=self.update_regression_line)
gui.checkBox(
box, self, 'graph.label_only_selected',
'Label only selected points', callback=self.graph.update_labels)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.vBox(self.controlArea, "Zoom/Select"), nomargin=True,
buttons=[g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset]
)
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QAction(
"Zoom in", self, triggered=lambda: zoom(1.25)
)
zoom_in.setShortcuts([QKeySequence(QKeySequence.ZoomIn),
QKeySequence(self.tr("Ctrl+="))])
zoom_out = QAction(
"Zoom out", self, shortcut=QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25)
)
zoom_fit = QAction(
"Fit in view", self,
shortcut=QKeySequence(Qt.ControlModifier | Qt.Key_0),
triggered=fit_to_view
)
self.addActions([zoom_in, zoom_out, zoom_fit])
class OWScatterPlot(OWWidget):
name = 'Scatter Plot'
description = 'Scatter plot visualization.'
icon = "icons/ScatterPlot.svg"
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table, Default), ("Other Data", Table),
("Features", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
auto_sample = Setting(True)
toolbar_selection = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
graph_name = "graph.plot_widget.plotItem"
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.data_metas_X = None # self.data, where primitive metas are moved to X
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
common_options = dict(labelWidth=50,
orientation=Qt.Horizontal,
sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.update_attr,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.update_attr,
**common_options)
self.vizrank = self.VizRank(self)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank_button = gui.button(
vizrank_box,
self,
"Rank projections",
callback=self.vizrank.reshow,
tooltip="Find projections with good class separation")
self.vizrank_button.setEnabled(False)
gui.separator(box)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
self.sampling = gui.auto_commit(self.controlArea,
self,
"auto_sample",
"Sample",
box="Sampling",
callback=self.switch_sampling,
commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
box = gui.vBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
box = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
self.cb_class_density = gui.checkBox(box,
self,
value='graph.class_density',
label='Show class density',
callback=self.update_density)
self.zoom_select_toolbar = g.zoom_select_toolbar(
gui.vBox(self.controlArea, "Zoom/Select"),
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction("Zoom in", self, triggered=lambda: zoom(1.25))
zoom_in.setShortcuts([
QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))
])
zoom_out = QtGui.QAction("Zoom out",
self,
shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25))
zoom_fit = QtGui.QAction("Fit in view",
self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier
| Qt.Key_0),
triggered=fit_to_view)
self.addActions([zoom_in, zoom_out, zoom_fit])
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.update_graph()
def set_data(self, data):
self.information(1)
self.__timer.stop()
self.sampling.setVisible(False)
self.sql_data = None
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.information(1, "Large SQL table (showing a sample)")
self.sql_data = data
data_sample = data.sample_time(0.8, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.sampling.setVisible(True)
if self.auto_sample:
self.__timer.start()
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = (self.data and data and data.domain.checksum()
== self.data.domain.checksum())
self.data = data
self.data_metas_X = self.move_primitive_metas_to_X(data)
if not same_domain:
self.init_attr_values()
self.vizrank._initialize()
self.vizrank_button.setEnabled(
self.data is not None and self.data.domain.class_var is not None
and len(self.data.domain.attributes) > 1 and len(self.data) > 1)
self.openContext(self.data)
def add_data(self, time=0.4):
if self.data and len(self.data) > 2000:
return self.__timer.stop()
data_sample = self.sql_data.sample_time(time, no_cache=True)
if data_sample:
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.data = Table.concatenate((self.data, data), axis=0)
self.data_metas_X = self.move_primitive_metas_to_X(self.data)
self.handleNewSignals()
def switch_sampling(self):
self.__timer.stop()
if self.auto_sample and self.sql_data:
self.add_data()
self.__timer.start()
def move_primitive_metas_to_X(self, data):
if data is not None:
new_attrs = [
a for a in data.domain.attributes + data.domain.metas
if a.is_primitive()
]
new_metas = [m for m in data.domain.metas if not m.is_primitive()]
data = Table.from_table(
Domain(new_attrs, data.domain.class_vars, new_metas), data)
return data
def set_subset_data(self, subset_data):
self.warning(0)
if isinstance(subset_data, SqlTable):
if subset_data.approx_len() < AUTO_DL_LIMIT:
subset_data = Table(subset_data)
else:
self.warning(0,
"Data subset does not support large Sql tables")
subset_data = None
self.subset_data = self.move_primitive_metas_to_X(subset_data)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data_metas_X, self.subset_data)
if self.attribute_selection_list and \
all(attr.name in self.graph.attribute_name_index
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0].name
self.attr_y = self.attribute_selection_list[1].name
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.unconditional_commit()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.cb_attr_y.clear()
self.attr_x = None
self.attr_y = None
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
if not self.data:
return
for var in self.data.domain.metas:
if not var.is_primitive():
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if attr.is_discrete:
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
for var in self.data.domain.metas:
if var.is_primitive():
self.cb_attr_x.addItem(self.icons[var], var.name)
self.cb_attr_y.addItem(self.icons[var], var.name)
self.cb_attr_color.addItem(self.icons[var], var.name)
if var.is_discrete:
self.cb_attr_shape.addItem(self.icons[var], var.name)
else:
self.cb_attr_size.addItem(self.icons[var], var.name)
self.cb_attr_label.addItem(self.icons[var], var.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def update_attr(self, attributes=None):
self.update_graph(attributes=attributes)
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.send_features()
def update_colors(self):
self.graph.update_colors()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_graph(self, attributes=None, reset_view=True, **_):
self.graph.zoomStack = []
if attributes and len(attributes) == 2:
self.attr_x, self.attr_y = attributes
if not self.graph.have_data:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
self.send_data()
def send_data(self):
selected = unselected = None
# TODO: Implement selection for sql data
if isinstance(self.data, SqlTable):
selected = unselected = self.data
elif self.data is not None:
selection = self.graph.get_selection()
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
self.send("Other Data", unselected)
def send_features(self):
features = None
if self.attr_x or self.attr_y:
dom = Domain([], metas=(StringVariable(name="feature"), ))
features = Table(dom, [[self.attr_x], [self.attr_y]])
features.name = "Features"
self.send("Features", features)
def commit(self):
self.send_data()
self.send_features()
def closeEvent(self, ce):
self.vizrank.close()
super().closeEvent(ce)
def hideEvent(self, he):
self.vizrank.hide()
super().hideEvent(he)
def get_widget_name_extension(self):
if self.data is not None:
return "{} vs {}".format(self.combo_value(self.cb_attr_x),
self.combo_value(self.cb_attr_y))
def send_report(self):
disc_attr = False
if self.data:
domain = self.data.domain
disc_attr = domain[self.attr_x].is_discrete or \
domain[self.attr_y].is_discrete
caption = report.render_items_vert(
(("Color", self.combo_value(self.cb_attr_color)),
("Label", self.combo_value(self.cb_attr_label)),
("Shape", self.combo_value(self.cb_attr_shape)),
("Size", self.combo_value(self.cb_attr_size)),
("Jittering", (self.graph.jitter_continuous or disc_attr)
and self.graph.jitter_size)))
self.report_plot()
if caption:
self.report_caption(caption)
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
class VizRank(OWWidget):
name = "Rank projections (Scatter Plot)"
want_control_area = False
def __init__(self, parent_widget):
super().__init__()
self.parent_widget = parent_widget
self.running = False
self.progress = None
self.k = 10
self.projectionTable = QTableView()
self.mainArea.layout().addWidget(self.projectionTable)
self.projectionTable.setSelectionBehavior(QTableView.SelectRows)
self.projectionTable.setSelectionMode(QTableView.SingleSelection)
self.projectionTable.setSortingEnabled(True)
self.projectionTableModel = QStandardItemModel(self)
self.projectionTable.setModel(self.projectionTableModel)
self.projectionTable.selectionModel().selectionChanged.connect(
self.on_selection_changed)
self.button = gui.button(self.mainArea,
self,
"Start evaluation",
callback=self.toggle,
default=True)
self.resize(380, 512)
self._initialize()
def _initialize(self):
self.running = False
self.projectionTableModel.clear()
self.projectionTableModel.setHorizontalHeaderLabels(
["Score", "Feature 1", "Feature 2"])
self.projectionTable.setColumnWidth(0, 60)
self.projectionTable.setColumnWidth(1, 120)
self.projectionTable.setColumnWidth(2, 120)
self.button.setText("Start evaluation")
self.button.setEnabled(False)
self.pause = False
self.data = None
self.attrs = []
self.scores = []
self.i, self.j = 0, 0
if self.progress:
self.progress.finish()
self.progress = None
self.information(0)
if self.parent_widget.data:
if not self.parent_widget.data.domain.class_var:
self.information(
0, "Data with a class variable is required.")
return
if len(self.parent_widget.data.domain.attributes) < 2:
self.information(0,
'At least 2 unique features are needed.')
return
if len(self.parent_widget.data) < 2:
self.information(0, 'At least 2 instances are needed.')
return
self.button.setEnabled(True)
def on_selection_changed(self, selected, deselected):
"""Called when the ranks view selection changes."""
a1 = selected.indexes()[1].data()
a2 = selected.indexes()[2].data()
self.parent_widget.update_attr(attributes=(a1, a2))
def toggle(self):
self.running ^= 1
if self.running:
self.button.setText("Pause")
self.run()
else:
self.button.setText("Continue")
self.button.setEnabled(False)
def run(self):
graph = self.parent_widget.graph
y_full = self.parent_widget.data.Y
if not self.attrs:
self.attrs = self.score_heuristic()
if not self.progress:
self.progress = gui.ProgressBar(
self,
len(self.attrs) * (len(self.attrs) - 1) / 2)
for i in range(self.i, len(self.attrs)):
ind1 = graph.attribute_name_index[self.attrs[i]]
for j in range(self.j, i):
if not self.running:
self.i, self.j = i, j
if not self.projectionTable.selectedIndexes():
self.projectionTable.selectRow(0)
self.button.setEnabled(True)
return
ind2 = graph.attribute_name_index[self.attrs[j]]
X = graph.scaled_data[[ind1, ind2], :]
valid = graph.get_valid_list([ind1, ind2])
X = X[:, valid].T
if X.shape[0] < self.k:
self.progress.advance()
continue
y = y_full[valid]
n_neighbors = min(self.k, len(X) - 1)
knn = NearestNeighbors(n_neighbors=n_neighbors).fit(X)
ind = knn.kneighbors(return_distance=False)
if self.parent_widget.data.domain.has_discrete_class:
score = np.sum(y[ind] == y.reshape(-1, 1)) / (
len(y_full) * n_neighbors)
else:
score = r2_score(y, np.mean(
y[ind], axis=1)) * (len(y) / len(y_full))
pos = bisect_left(self.scores, score)
self.projectionTableModel.insertRow(
len(self.scores) - pos, [
QStandardItem("{:.4f}".format(score)),
QStandardItem(self.attrs[j]),
QStandardItem(self.attrs[i])
])
self.scores.insert(pos, score)
self.progress.advance()
self.j = 0
self.progress.finish()
if not self.projectionTable.selectedIndexes():
self.projectionTable.selectRow(0)
self.button.setText("Finished")
self.button.setEnabled(False)
def score_heuristic(self):
X = self.parent_widget.graph.scaled_data.T
Y = self.parent_widget.data.Y
dom = Domain(
[ContinuousVariable(str(i)) for i in range(X.shape[1])],
self.parent_widget.data.domain.class_vars)
data = Table(dom, X, Y)
relief = ReliefF if isinstance(dom.class_var,
DiscreteVariable) else RReliefF
weights = relief(n_iterations=100, k_nearest=self.k)(data)
attrs = sorted(zip(
weights,
(x.name for x in self.parent_widget.data.domain.attributes)),
reverse=True)
return [a for _, a in attrs]
class OWScatterPlot(OWWidget):
"""Scatterplot visualization with explorative analysis and intelligent
data visualization enhancements."""
name = 'Scatter Plot'
description = "Interactive scatter plot visualization with " \
"intelligent data visualization enhancements."
icon = "icons/ScatterPlot.svg"
priority = 140
class Inputs:
data = Input("Data", Table, default=True)
data_subset = Input("Data Subset", Table)
features = Input("Features", AttributeList)
class Outputs:
selected_data = Output("Selected Data", Table, default=True)
annotated_data = Output(ANNOTATED_DATA_SIGNAL_NAME, Table)
features = Output("Features", AttributeList, dynamic=False)
settings_version = 2
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
auto_sample = Setting(True)
toolbar_selection = Setting(0)
attr_x = ContextSetting(None)
attr_y = ContextSetting(None)
#: Serialized selection state to be restored
selection_group = Setting(None, schema_only=True)
graph = SettingProvider(OWScatterPlotGraph)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
graph_name = "graph.plot_widget.plotItem"
class Information(OWWidget.Information):
sampled_sql = Msg("Large SQL table; showing a sample.")
def __init__(self):
super().__init__()
box = gui.vBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axispen = QPen(self.palette().color(QPalette.Text))
axis = plot.getAxis("bottom")
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.sql_data = None # Orange.data.sql.table.SqlTable
self.attribute_selection_list = None # list of Orange.data.Variable
self.__timer = QTimer(self, interval=1200)
self.__timer.timeout.connect(self.add_data)
#: Remember the saved state to restore
self.__pending_selection_restore = self.selection_group
self.selection_group = None
common_options = dict(
labelWidth=50, orientation=Qt.Horizontal, sendSelectedValue=True,
valueType=str)
box = gui.vBox(self.controlArea, "Axis Data")
dmod = DomainModel
self.xy_model = DomainModel(dmod.MIXED, valid_types=dmod.PRIMITIVE)
self.cb_attr_x = gui.comboBox(
box, self, "attr_x", label="Axis x:", callback=self.update_attr,
model=self.xy_model, **common_options)
self.cb_attr_y = gui.comboBox(
box, self, "attr_y", label="Axis y:", callback=self.update_attr,
model=self.xy_model, **common_options)
vizrank_box = gui.hBox(box)
gui.separator(vizrank_box, width=common_options["labelWidth"])
self.vizrank, self.vizrank_button = ScatterPlotVizRank.add_vizrank(
vizrank_box, self, "Find Informative Projections", self.set_attr)
gui.separator(box)
g = self.graph.gui
g.add_widgets([g.JitterSizeSlider,
g.JitterNumericValues], box)
self.sampling = gui.auto_commit(
self.controlArea, self, "auto_sample", "Sample", box="Sampling",
callback=self.switch_sampling, commit=lambda: self.add_data(1))
self.sampling.setVisible(False)
g.point_properties_box(self.controlArea)
self.models = [self.xy_model] + g.points_models
box_plot_prop = gui.vBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend,
g.ShowGridLines,
g.ToolTipShowsAll,
g.ClassDensity,
g.RegressionLine,
g.LabelOnlySelected], box_plot_prop)
self.graph.box_zoom_select(self.controlArea)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection", "Send Automatically")
self.graph.zoom_actions(self)
def keyPressEvent(self, event):
super().keyPressEvent(event)
self.graph.update_tooltip(event.modifiers())
def keyReleaseEvent(self, event):
super().keyReleaseEvent(event)
self.graph.update_tooltip(event.modifiers())
def reset_graph_data(self, *_):
if self.data is not None:
self.graph.rescale_data()
self.update_graph()
def _vizrank_color_change(self):
self.vizrank.initialize()
is_enabled = self.data is not None and not self.data.is_sparse() and \
len([v for v in chain(self.data.domain.variables, self.data.domain.metas)
if v.is_primitive]) > 2\
and len(self.data) > 1
self.vizrank_button.setEnabled(
is_enabled and self.graph.attr_color is not None and
not np.isnan(self.data.get_column_view(self.graph.attr_color)[0].astype(float)).all())
if is_enabled and self.graph.attr_color is None:
self.vizrank_button.setToolTip("Color variable has to be selected.")
else:
self.vizrank_button.setToolTip("")
@Inputs.data
def set_data(self, data):
self.clear_messages()
self.Information.sampled_sql.clear()
self.__timer.stop()
self.sampling.setVisible(False)
self.sql_data = None
if isinstance(data, SqlTable):
if data.approx_len() < 4000:
data = Table(data)
else:
self.Information.sampled_sql()
self.sql_data = data
data_sample = data.sample_time(0.8, no_cache=True)
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.sampling.setVisible(True)
if self.auto_sample:
self.__timer.start()
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = (self.data and data and
data.domain.checksum() == self.data.domain.checksum())
self.data = data
if not same_domain:
self.init_attr_values()
self.openContext(self.data)
self._vizrank_color_change()
def findvar(name, iterable):
"""Find a Orange.data.Variable in `iterable` by name"""
for el in iterable:
if isinstance(el, Orange.data.Variable) and el.name == name:
return el
return None
# handle restored settings from < 3.3.9 when attr_* were stored
# by name
if isinstance(self.attr_x, str):
self.attr_x = findvar(self.attr_x, self.xy_model)
if isinstance(self.attr_y, str):
self.attr_y = findvar(self.attr_y, self.xy_model)
if isinstance(self.graph.attr_label, str):
self.graph.attr_label = findvar(
self.graph.attr_label, self.graph.gui.label_model)
if isinstance(self.graph.attr_color, str):
self.graph.attr_color = findvar(
self.graph.attr_color, self.graph.gui.color_model)
if isinstance(self.graph.attr_shape, str):
self.graph.attr_shape = findvar(
self.graph.attr_shape, self.graph.gui.shape_model)
if isinstance(self.graph.attr_size, str):
self.graph.attr_size = findvar(
self.graph.attr_size, self.graph.gui.size_model)
def add_data(self, time=0.4):
if self.data and len(self.data) > 2000:
return self.__timer.stop()
data_sample = self.sql_data.sample_time(time, no_cache=True)
if data_sample:
data_sample.download_data(2000, partial=True)
data = Table(data_sample)
self.data = Table.concatenate((self.data, data), axis=0)
self.handleNewSignals()
def switch_sampling(self):
self.__timer.stop()
if self.auto_sample and self.sql_data:
self.add_data()
self.__timer.start()
@Inputs.data_subset
def set_subset_data(self, subset_data):
self.warning()
if isinstance(subset_data, SqlTable):
if subset_data.approx_len() < AUTO_DL_LIMIT:
subset_data = Table(subset_data)
else:
self.warning("Data subset does not support large Sql tables")
subset_data = None
self.subset_data = subset_data
self.controls.graph.alpha_value.setEnabled(subset_data is None)
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data, self.subset_data)
if self.attribute_selection_list and self.graph.domain and \
all(attr in self.graph.domain
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0]
self.attr_y = self.attribute_selection_list[1]
self.attribute_selection_list = None
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.cb_reg_line.setEnabled(self.graph.can_draw_regresssion_line())
if self.data is not None and self.__pending_selection_restore is not None:
self.apply_selection(self.__pending_selection_restore)
self.__pending_selection_restore = None
self.unconditional_commit()
def apply_selection(self, selection):
"""Apply `selection` to the current plot."""
if self.data is not None:
self.graph.selection = np.zeros(len(self.data), dtype=np.uint8)
self.selection_group = [x for x in selection if x[0] < len(self.data)]
selection_array = np.array(self.selection_group).T
self.graph.selection[selection_array[0]] = selection_array[1]
self.graph.update_colors(keep_colors=True)
@Inputs.features
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
def init_attr_values(self):
domain = self.data and self.data.domain
for model in self.models:
model.set_domain(domain)
self.attr_x = self.xy_model[0] if self.xy_model else None
self.attr_y = self.xy_model[1] if len(self.xy_model) >= 2 \
else self.attr_x
self.graph.attr_color = self.data.domain.class_var if domain else None
self.graph.attr_shape = None
self.graph.attr_size = None
self.graph.attr_label = None
def set_attr(self, attr_x, attr_y):
self.attr_x, self.attr_y = attr_x, attr_y
self.update_attr()
def update_attr(self):
self.update_graph()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
self.cb_reg_line.setEnabled(self.graph.can_draw_regresssion_line())
self.send_features()
def update_colors(self):
self._vizrank_color_change()
self.cb_class_density.setEnabled(self.graph.can_draw_density())
def update_density(self):
self.update_graph(reset_view=False)
def update_regression_line(self):
self.update_graph(reset_view=False)
def update_graph(self, reset_view=True, **_):
self.graph.zoomStack = []
if self.graph.data is None:
return
self.graph.update_data(self.attr_x, self.attr_y, reset_view)
def selection_changed(self):
# Store current selection in a setting that is stored in workflow
if isinstance(self.data, SqlTable):
selection = None
elif self.data is not None:
selection = self.graph.get_selection()
else:
selection = None
if selection is not None and len(selection):
self.selection_group = list(zip(selection, self.graph.selection[selection]))
else:
self.selection_group = None
self.commit()
def send_data(self):
# TODO: Implement selection for sql data
def _get_selected():
if not len(selection):
return None
return create_groups_table(data, graph.selection, False, "Group")
def _get_annotated():
if graph.selection is not None and np.max(graph.selection) > 1:
return create_groups_table(data, graph.selection)
else:
return create_annotated_table(data, selection)
graph = self.graph
data = self.data
selection = graph.get_selection()
self.Outputs.annotated_data.send(_get_annotated())
self.Outputs.selected_data.send(_get_selected())
def send_features(self):
features = [attr for attr in [self.attr_x, self.attr_y] if attr]
self.Outputs.features.send(features or None)
def commit(self):
self.send_data()
self.send_features()
def get_widget_name_extension(self):
if self.data is not None:
return "{} vs {}".format(self.attr_x.name, self.attr_y.name)
def send_report(self):
if self.data is None:
return
def name(var):
return var and var.name
caption = report.render_items_vert((
("Color", name(self.graph.attr_color)),
("Label", name(self.graph.attr_label)),
("Shape", name(self.graph.attr_shape)),
("Size", name(self.graph.attr_size)),
("Jittering", (self.attr_x.is_discrete or
self.attr_y.is_discrete or
self.graph.jitter_continuous) and
self.graph.jitter_size)))
self.report_plot()
if caption:
self.report_caption(caption)
def onDeleteWidget(self):
super().onDeleteWidget()
self.graph.plot_widget.getViewBox().deleteLater()
self.graph.plot_widget.clear()
@classmethod
def migrate_settings(cls, settings, version):
if version < 2 and "selection" in settings and settings["selection"]:
settings["selection_group"] = [(a, 1) for a in settings["selection"]]
class OWScatterPlot(OWWidget):
name = 'Scatter plot'
description = 'Scatter plot visualization'
icon = "icons/ScatterPlot.svg"
inputs = [("Data", Table, "set_data", Default),
("Data Subset", Table, "set_subset_data"),
("Features", AttributeList, "set_shown_attributes")]
outputs = [("Selected Data", Table), ("Other Data", Table)]
settingsHandler = DomainContextHandler()
auto_send_selection = Setting(True)
toolbar_selection = Setting(0)
color_settings = Setting(None)
selected_schema_index = Setting(0)
attr_x = ContextSetting("")
attr_y = ContextSetting("")
graph = SettingProvider(OWScatterPlotGraph)
zoom_select_toolbar = SettingProvider(ZoomSelectToolbar)
jitter_sizes = [0, 0.1, 0.5, 1, 2, 3, 4, 5, 7, 10]
def __init__(self):
super().__init__()
box = gui.widgetBox(self.mainArea, True, margin=0)
self.graph = OWScatterPlotGraph(self, box, "ScatterPlot")
box.layout().addWidget(self.graph.plot_widget)
plot = self.graph.plot_widget
axisfont = font_resize(self.font(), 0.8, minsize=11)
axispen = QtGui.QPen(self.palette().color(QtGui.QPalette.Text))
axis = plot.getAxis("bottom")
axis.setTickFont(axisfont)
axis.setPen(axispen)
axis = plot.getAxis("left")
axis.setTickFont(axisfont)
axis.setPen(axispen)
self.data = None # Orange.data.Table
self.subset_data = None # Orange.data.Table
self.attribute_selection_list = None # list of Orange.data.Variable
common_options = {
"labelWidth": 50,
"orientation": "horizontal",
"sendSelectedValue": True,
"valueType": str
}
box = gui.widgetBox(self.controlArea, "Axis Data")
self.cb_attr_x = gui.comboBox(box,
self,
"attr_x",
label="Axis x:",
callback=self.major_graph_update,
**common_options)
self.cb_attr_y = gui.comboBox(box,
self,
"attr_y",
label="Axis y:",
callback=self.major_graph_update,
**common_options)
gui.valueSlider(box,
self,
value='graph.jitter_size',
label='Jittering: ',
values=self.jitter_sizes,
callback=self.reset_graph_data,
labelFormat=lambda x: "None"
if x == 0 else ("%.1f %%" if x < 1 else "%d %%") % x)
gui.checkBox(gui.indentedBox(box),
self,
'graph.jitter_continuous',
'Jitter continuous values',
callback=self.reset_graph_data)
box = gui.widgetBox(self.controlArea, "Points")
self.cb_attr_color = gui.comboBox(box,
self,
"graph.attr_color",
label="Color:",
emptyString="(Same color)",
callback=self.graph.update_colors,
**common_options)
self.cb_attr_label = gui.comboBox(box,
self,
"graph.attr_label",
label="Label:",
emptyString="(No labels)",
callback=self.graph.update_labels,
**common_options)
self.cb_attr_shape = gui.comboBox(box,
self,
"graph.attr_shape",
label="Shape:",
emptyString="(Same shape)",
callback=self.graph.update_shapes,
**common_options)
self.cb_attr_size = gui.comboBox(box,
self,
"graph.attr_size",
label="Size:",
emptyString="(Same size)",
callback=self.graph.update_sizes,
**common_options)
g = self.graph.gui
box2 = g.point_properties_box(self.controlArea, box)
gui.button(box2, self, "Set Colors", self.set_colors)
box = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box)
gui.checkBox(box,
self,
value='graph.tooltip_shows_all',
label='Show all data on mouse hover')
gui.separator(self.controlArea, 8, 8)
self.zoom_select_toolbar = g.zoom_select_toolbar(
self.controlArea,
nomargin=True,
buttons=[
g.StateButtonsBegin, g.SimpleSelect, g.Pan, g.Zoom,
g.StateButtonsEnd, g.ZoomReset
])
buttons = self.zoom_select_toolbar.buttons
buttons[g.Zoom].clicked.connect(self.graph.zoom_button_clicked)
buttons[g.Pan].clicked.connect(self.graph.pan_button_clicked)
buttons[g.SimpleSelect].clicked.connect(
self.graph.select_button_clicked)
buttons[g.ZoomReset].clicked.connect(self.graph.reset_button_clicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
dlg = self.create_color_dialog()
self.graph.continuous_palette = dlg.getContinuousPalette("contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
dlg.deleteLater()
p = self.graph.plot_widget.palette()
self.graph.set_palette(p)
gui.auto_commit(self.controlArea, self, "auto_send_selection",
"Send Selection")
def zoom(s):
"""Zoom in/out by factor `s`."""
viewbox = plot.getViewBox()
# scaleBy scales the view's bounds (the axis range)
viewbox.scaleBy((1 / s, 1 / s))
def fit_to_view():
viewbox = plot.getViewBox()
viewbox.autoRange()
zoom_in = QtGui.QAction("Zoom in", self, triggered=lambda: zoom(1.25))
zoom_in.setShortcuts([
QtGui.QKeySequence(QtGui.QKeySequence.ZoomIn),
QtGui.QKeySequence(self.tr("Ctrl+="))
])
zoom_out = QtGui.QAction("Zoom out",
self,
shortcut=QtGui.QKeySequence.ZoomOut,
triggered=lambda: zoom(1 / 1.25))
zoom_fit = QtGui.QAction("Fit in view",
self,
shortcut=QtGui.QKeySequence(Qt.ControlModifier
| Qt.Key_0),
triggered=fit_to_view)
self.addActions([zoom_in, zoom_out, zoom_fit])
# self.vizrank = OWVizRank(self, self.signalManager, self.graph,
# orngVizRank.SCATTERPLOT, "ScatterPlot")
# self.optimizationDlg = self.vizrank
# def settingsFromWidgetCallback(self, handler, context):
# context.selectionPolygons = []
# for curve in self.graph.selectionCurveList:
# xs = [curve.x(i) for i in range(curve.dataSize())]
# ys = [curve.y(i) for i in range(curve.dataSize())]
# context.selectionPolygons.append((xs, ys))
# def settingsToWidgetCallback(self, handler, context):
# selections = getattr(context, "selectionPolygons", [])
# for (xs, ys) in selections:
# c = SelectionCurve("")
# c.setData(xs,ys)
# c.attach(self.graph)
# self.graph.selectionCurveList.append(c)
def reset_graph_data(self, *_):
self.graph.rescale_data()
self.major_graph_update()
def set_data(self, data):
if type(data) == SqlTable and data.approx_len() > LARGE_TABLE:
data = data.sample_time(DEFAULT_SAMPLE_TIME)
if data is not None and (len(data) == 0 or len(data.domain) == 0):
data = None
if self.data and data and self.data.checksum() == data.checksum():
return
self.closeContext()
same_domain = \
self.data and data and \
data.domain.checksum() == self.data.domain.checksum()
self.data = data
# TODO: adapt scatter plot to work on SqlTables (avoid use of X and Y)
if isinstance(self.data, SqlTable):
self.data.download_data()
# self.vizrank.clearResults()
if not same_domain:
self.init_attr_values()
self.openContext(self.data)
def set_subset_data(self, subset_data):
self.subset_data = subset_data
# self.vizrank.clearArguments()
# called when all signals are received, so the graph is updated only once
def handleNewSignals(self):
self.graph.new_data(self.data, self.subset_data)
# self.vizrank.resetDialog()
if self.attribute_selection_list and \
all(attr.name in self.graph.attribute_name_index
for attr in self.attribute_selection_list):
self.attr_x = self.attribute_selection_list[0].name
self.attr_y = self.attribute_selection_list[1].name
self.attribute_selection_list = None
self.update_graph()
self.unconditional_commit()
def set_shown_attributes(self, attributes):
if attributes and len(attributes) >= 2:
self.attribute_selection_list = attributes[:2]
else:
self.attribute_selection_list = None
# Callback from VizRank dialog
def show_selected_attributes(self):
val = self.vizrank.get_selected_projection()
if not val:
return
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
self.major_graph_update(val[3])
def get_shown_attributes(self):
return self.attr_x, self.attr_y
def init_attr_values(self):
self.cb_attr_x.clear()
self.cb_attr_y.clear()
self.cb_attr_color.clear()
self.cb_attr_color.addItem("(Same color)")
self.cb_attr_label.clear()
self.cb_attr_label.addItem("(No labels)")
self.cb_attr_shape.clear()
self.cb_attr_shape.addItem("(Same shape)")
self.cb_attr_size.clear()
self.cb_attr_size.addItem("(Same size)")
if not self.data:
return
for var in self.data.domain.metas:
self.cb_attr_label.addItem(self.icons[var], var.name)
for attr in self.data.domain.variables:
self.cb_attr_x.addItem(self.icons[attr], attr.name)
self.cb_attr_y.addItem(self.icons[attr], attr.name)
self.cb_attr_color.addItem(self.icons[attr], attr.name)
if isinstance(attr, DiscreteVariable):
self.cb_attr_shape.addItem(self.icons[attr], attr.name)
else:
self.cb_attr_size.addItem(self.icons[attr], attr.name)
self.cb_attr_label.addItem(self.icons[attr], attr.name)
self.attr_x = self.cb_attr_x.itemText(0)
if self.cb_attr_y.count() > 1:
self.attr_y = self.cb_attr_y.itemText(1)
else:
self.attr_y = self.cb_attr_y.itemText(0)
if self.data.domain.class_var:
self.graph.attr_color = self.data.domain.class_var.name
else:
self.graph.attr_color = ""
self.graph.attr_shape = ""
self.graph.attr_size = ""
self.graph.attr_label = ""
def major_graph_update(self, attributes=None, inside_colors=None, **args):
self.update_graph(attributes, inside_colors, **args)
def update_graph(self, attributes=None, inside_colors=None, **_):
self.graph.zoomStack = []
if not self.graph.have_data:
return
if attributes and len(attributes) == 2:
self.attr_x, self.attr_y = attributes
self.graph.update_data(self.attr_x, self.attr_y)
def saveSettings(self):
OWWidget.saveSettings(self)
# self.vizrank.saveSettings()
def selection_changed(self):
self.commit()
def commit(self):
selected = unselected = None
# TODO: Implement selection for sql data
if isinstance(self.data, SqlTable):
selected = unselected = self.data
elif self.data is not None:
selection = self.graph.get_selection()
selected = self.data[selection]
unselection = np.full(len(self.data), True, dtype=bool)
unselection[selection] = False
unselected = self.data[unselection]
self.send("Selected Data", selected)
self.send("Other Data", unselected)
def set_colors(self):
dlg = self.create_color_dialog()
if dlg.exec_():
self.color_settings = dlg.getColorSchemas()
self.selected_schema_index = dlg.selectedSchemaIndex
self.graph.continuous_palette = dlg.getContinuousPalette(
"contPalette")
self.graph.discrete_palette = dlg.getDiscretePalette("discPalette")
self.update_graph()
def create_color_dialog(self):
c = ColorPaletteDlg(self, "Color Palette")
c.createDiscretePalette("discPalette", "Discrete Palette")
c.createContinuousPalette("contPalette", "Continuous Palette")
c.setColorSchemas(self.color_settings, self.selected_schema_index)
return c
def closeEvent(self, ce):
# self.vizrank.close()
super().closeEvent(ce)
def sendReport(self):
self.startReport("%s [%s - %s]" %
(self.windowTitle(), self.attr_x, self.attr_y))
self.reportSettings(
"Visualized attributes",
[("X", self.attr_x), ("Y", self.attr_y), self.graph.attr_color and
("Color", self.graph.attr_color), self.graph.attr_label and
("Label", self.graph.attr_label), self.graph.attr_shape and
("Shape", self.graph.attr_shape), self.graph.attr_size and
("Size", self.graph.attr_size)])
self.reportSettings("Settings",
[("Symbol size", self.graph.point_width),
("Opacity", self.graph.alpha_value),
("Jittering", self.graph.jitter_size),
("Jitter continuous attributes",
gui.YesNo[self.graph.jitter_continuous])])
self.reportSection("Graph")
self.reportImage(self.graph.save_to_file, QSize(400, 400))
