def test_set_initial_value(self):
widget = OWWidget()
variables = [ContinuousVariable(x) for x in "abc"]
model = VariableListModel(variables)
widget.foo = variables[1]
combo = gui.comboBox(widget.controlArea, widget, "foo", model=model)
self.assertEqual(combo.currentIndex(), 1)
def __init__(self,parent=None, signalManager = None):
OWWidget.__init__(self, parent, signalManager, "Sieve diagram", True)
#self.controlArea.setMinimumWidth(250)
#set default settings
self.data = None
self.attrX = ""
self.attrY = ""
self.attrCondition = ""
self.attrConditionValue = ""
self.showLines = 1
self.showCases = 0
self.showInColor = 1
self.attributeSelectionList = None
self.stopCalculating = 0
self.canvas = QGraphicsScene()
self.canvasView = QGraphicsView(self.canvas, self.mainArea)
self.mainArea.layout().addWidget(self.canvasView)
self.canvasView.setVerticalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
self.canvasView.setHorizontalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
#GUI
self.attrSelGroup = gui.widgetBox(self.controlArea, box = "Shown attributes")
self.attrXCombo = gui.comboBox(self.attrSelGroup, self, value="attrX", label="X attribute:", orientation="horizontal", tooltip = "Select an attribute to be shown on the X axis", callback = self.updateGraph, sendSelectedValue = 1, valueType = str, labelWidth = 70)
self.attrYCombo = gui.comboBox(self.attrSelGroup, self, value="attrY", label="Y attribute:", orientation="horizontal", tooltip = "Select an attribute to be shown on the Y axis", callback = self.updateGraph, sendSelectedValue = 1, valueType = str, labelWidth = 70)
gui.separator(self.controlArea)
self.conditionGroup = gui.widgetBox(self.controlArea, box = "Condition")
self.attrConditionCombo = gui.comboBox(self.conditionGroup, self, value="attrCondition", label="Attribute:", orientation="horizontal", callback = self.updateConditionAttr, sendSelectedValue = 1, valueType = str, labelWidth = 70)
self.attrConditionValueCombo = gui.comboBox(self.conditionGroup, self, value="attrConditionValue", label="Value:", orientation="horizontal", callback = self.updateGraph, sendSelectedValue = 1, valueType = str, labelWidth = 70)
gui.separator(self.controlArea)
box2 = gui.widgetBox(self.controlArea, box = "Visual settings")
gui.checkBox(box2, self, "showLines", "Show squares (observed frequency)", callback = self.updateGraph)
hbox = gui.widgetBox(box2, orientation = "horizontal")
gui.checkBox(hbox, self, "showCases", "Show data instances...", callback = self.updateGraph)
gui.checkBox(hbox, self, "showInColor", "...in color", callback = self.updateGraph)
gui.separator(self.controlArea)
# self.optimizationDlg = OWSieveOptimization(self, self.signalManager)
# optimizationButtons = gui.widgetBox(self.controlArea, "Dialogs", orientation = "horizontal")
# gui.button(optimizationButtons, self, "VizRank", callback = self.optimizationDlg.reshow, debuggingEnabled = 0, tooltip = "Find attribute groups with highest value dependency")
gui.rubber(self.controlArea)
# self.wdChildDialogs = [self.optimizationDlg] # used when running widget debugging
# self.graphButton.clicked.connect(self.saveToFileCanvas)
self.icons = gui.attributeIconDict
self.resize(800, 550)
random.seed()
self.graphButton.clicked.connect(self.save_graph)
def test_select(self):
widget = OWWidget()
widget.foo = None
self.attrs = VariableListModel()
view = gui.listView(widget.controlArea, widget, "foo", model=self.attrs)
self.assertIsNone(widget.foo)
a, b, c = (ContinuousVariable(x) for x in "abc")
self.attrs[:] = [a, b, c]
view.setCurrentIndex(self.attrs.index(0, 0))
self.assertIs(widget.foo, a)
view.setCurrentIndex(self.attrs.index(2, 0))
self.assertIs(widget.foo, c)
widget.foo = b
selection = view.selectedIndexes()
self.assertEqual(len(selection), 1)
self.assertEqual(selection[0].row(), 1)
def resizeEvent(self, e):
OWWidget.resizeEvent(self, e)
self.updateGraph()
def __init__(self, parent=None, signalManager=None, name=" GEO Data Sets"):
OWWidget.__init__(self, parent, signalManager, name)
self.selectionChanged = False
self.filterString = ""
self.datasetName = ""
## GUI
box = gui.widgetBox(self.controlArea, "Info", addSpace=True)
self.infoBox = gui.widgetLabel(box, "Initializing\n\n")
box = gui.widgetBox(self.controlArea, "Output", addSpace=True)
gui.radioButtonsInBox(box,
self,
"outputRows",
["Genes in rows", "Samples in rows"],
"Rows",
callback=self.commitIf)
gui.checkBox(box,
self,
"mergeSpots",
"Merge spots of same gene",
callback=self.commitIf)
gui.separator(box)
self.nameEdit = gui.lineEdit(
box,
self,
"datasetName",
"Data set name",
tooltip="Override the default output data set name",
callback=self.onNameEdited)
self.nameEdit.setPlaceholderText("")
if sys.version_info < (3, ):
box = gui.widgetBox(self.controlArea, "Commit", addSpace=True)
self.commitButton = gui.button(box,
self,
"Commit",
callback=self.commit)
cb = gui.checkBox(box, self, "autoCommit", "Commit on any change")
gui.setStopper(self, self.commitButton, cb, "selectionChanged",
self.commit)
else:
gui.auto_commit(self.controlArea,
self,
"autoCommit",
"Commit",
box="Commit")
self.commitIf = self.commit
gui.rubber(self.controlArea)
gui.widgetLabel(self.mainArea, "Filter")
self.filterLineEdit = QLineEdit(textChanged=self.filter)
self.completer = TokenListCompleter(self,
caseSensitivity=Qt.CaseInsensitive)
self.filterLineEdit.setCompleter(self.completer)
self.mainArea.layout().addWidget(self.filterLineEdit)
splitter = QSplitter(Qt.Vertical, self.mainArea)
self.mainArea.layout().addWidget(splitter)
self.treeWidget = QTreeView(splitter)
self.treeWidget.setSelectionMode(QTreeView.SingleSelection)
self.treeWidget.setRootIsDecorated(False)
self.treeWidget.setSortingEnabled(True)
self.treeWidget.setAlternatingRowColors(True)
self.treeWidget.setUniformRowHeights(True)
self.treeWidget.setEditTriggers(QTreeView.NoEditTriggers)
linkdelegate = gui.LinkStyledItemDelegate(self.treeWidget)
self.treeWidget.setItemDelegateForColumn(1, linkdelegate)
self.treeWidget.setItemDelegateForColumn(8, linkdelegate)
self.treeWidget.setItemDelegateForColumn(
0, gui.IndicatorItemDelegate(self.treeWidget, role=Qt.DisplayRole))
proxyModel = MySortFilterProxyModel(self.treeWidget)
self.treeWidget.setModel(proxyModel)
self.treeWidget.selectionModel().selectionChanged.connect(
self.updateSelection)
self.treeWidget.viewport().setMouseTracking(True)
splitterH = QSplitter(Qt.Horizontal, splitter)
box = gui.widgetBox(splitterH, "Description")
self.infoGDS = gui.widgetLabel(box, "")
self.infoGDS.setWordWrap(True)
gui.rubber(box)
box = gui.widgetBox(splitterH, "Sample Annotations")
self.annotationsTree = QTreeWidget(box)
self.annotationsTree.setHeaderLabels(
["Type (Sample annotations)", "Sample count"])
self.annotationsTree.setRootIsDecorated(True)
box.layout().addWidget(self.annotationsTree)
self.annotationsTree.itemChanged.connect(
self.annotationSelectionChanged)
self._annotationsUpdating = False
self.splitters = splitter, splitterH
for sp, setting in zip(self.splitters, self.splitterSettings):
sp.splitterMoved.connect(self.splitterMoved)
sp.restoreState(setting)
self.searchKeys = [
"dataset_id", "title", "platform_organism", "description"
]
self.gds = []
self.gds_info = None
self.resize(1000, 600)
self.setBlocking(True)
self.setEnabled(False)
self.progressBarInit()
self._executor = ThreadExecutor()
func = partial(get_gds_model,
methodinvoke(self, "_setProgress", (float, )))
self._inittask = Task(function=func)
self._inittask.finished.connect(self._initializemodel)
self._executor.submit(self._inittask)
self._datatask = None
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
self.scorers = OrderedDict()
self.out_domain_desc = None
self.data = None
self.problem_type_mode = ProblemType.CLASSIFICATION
# results caches
self.scorers_results = {}
self.methods_results = {}
if not self.selected_methods:
self.selected_methods = {
method.name
for method in SCORES if method.is_default
}
# GUI
self.ranksModel = model = TableModel(parent=self) # type: TableModel
self.ranksView = view = TableView(self) # type: TableView
self.mainArea.layout().addWidget(view)
view.setModel(model)
view.setColumnWidth(0, 30)
view.selectionModel().selectionChanged.connect(self.on_select)
def _set_select_manual():
self.setSelectionMethod(OWRank.SelectManual)
view.manualSelection.connect(_set_select_manual)
view.verticalHeader().sectionClicked.connect(_set_select_manual)
view.horizontalHeader().sectionClicked.connect(self.headerClick)
self.measuresStack = stacked = QStackedWidget(self)
self.controlArea.layout().addWidget(stacked)
for scoring_methods in (CLS_SCORES, REG_SCORES, []):
box = gui.vBox(None,
"Scoring Methods" if scoring_methods else None)
stacked.addWidget(box)
for method in scoring_methods:
box.layout().addWidget(
QCheckBox(
method.name,
self,
objectName=method.
shortname, # To be easily found in tests
checked=method.name in self.selected_methods,
stateChanged=partial(self.methodSelectionChanged,
method_name=method.name)))
gui.rubber(box)
gui.rubber(self.controlArea)
self.switchProblemType(ProblemType.CLASSIFICATION)
selMethBox = gui.vBox(self.buttonsArea, "Select Attributes")
grid = QGridLayout()
grid.setContentsMargins(0, 0, 0, 0)
grid.setSpacing(6)
self.selectButtons = QButtonGroup()
self.selectButtons.buttonClicked[int].connect(self.setSelectionMethod)
def button(text, buttonid, toolTip=None):
b = QRadioButton(text)
self.selectButtons.addButton(b, buttonid)
if toolTip is not None:
b.setToolTip(toolTip)
return b
b1 = button(self.tr("None"), OWRank.SelectNone)
b2 = button(self.tr("All"), OWRank.SelectAll)
b3 = button(self.tr("Manual"), OWRank.SelectManual)
b4 = button(self.tr("Best ranked:"), OWRank.SelectNBest)
s = gui.spin(
selMethBox,
self,
"nSelected",
1,
999,
callback=lambda: self.setSelectionMethod(OWRank.SelectNBest),
addToLayout=False)
grid.addWidget(b1, 0, 0)
grid.addWidget(b2, 1, 0)
grid.addWidget(b3, 2, 0)
grid.addWidget(b4, 3, 0)
grid.addWidget(s, 3, 1)
self.selectButtons.button(self.selectionMethod).setChecked(True)
selMethBox.layout().addLayout(grid)
gui.auto_send(self.buttonsArea, self, "auto_apply")
self.info.set_input_summary(self.info.NoInput)
self.info.set_output_summary(self.info.NoOutput)
self.resize(690, 500)
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
self.available_scales = sorted(
MODELS.values(), key=lambda x: x["order"])
# create grid
grid = QGridLayout()
gui.widgetBox(self.controlArea, orientation=grid)
# image attribute selection
hbox_attr = gui.hBox(None)
self.cb_image_attr = gui.comboBox(
widget=hbox_attr,
master=self,
value='image_attr_current_index',
label='Image attribute',
orientation=Qt.Horizontal,
callback=self.setting_changed
)
grid.addWidget(hbox_attr, 1, 0, 1, 2)
# Scale images option
hbox_scale = gui.hBox(None)
gui.checkBox(
widget=hbox_scale,
master=self,
value="use_scale",
label="Scale images to ",
callback=self.setting_changed
)
self.scale_combo = gui.comboBox(
widget=hbox_scale,
master=self,
value="scale_index",
items=["{} ({}×{})".format(v["name"], *v["target_image_size"])
for v in self.available_scales],
callback=self.setting_changed
)
grid.addWidget(hbox_scale, 3, 0, 1, 2)
# file format
hbox_format = gui.hBox(None)
gui.comboBox(
widget=hbox_format,
master=self,
value="file_format_index",
label="File format",
items=[x.upper() for x in SUPPORTED_FILE_FORMATS],
orientation=Qt.Horizontal,
callback=self.setting_changed
)
grid.addWidget(hbox_format, 4, 0, 1, 2)
# auto save
grid.addWidget(
gui.checkBox(
widget=None,
master=self,
value="auto_save",
label="Autosave when receiving new data or settings change",
callback=self._update_messages),
5, 0, 1, 2)
# buttons
self.bt_save = gui.button(None, self, "Save", callback=self.save_file)
grid.addWidget(self.bt_save, 7, 0)
grid.addWidget(
gui.button(None, self, "Save as ...", callback=self.save_file_as),
7, 1)
grid.setRowMinimumHeight(5, 8)
grid.setRowMinimumHeight(6, 20)
self.scale_combo.setEnabled(self.use_scale)
self.adjustSize()
self._update_messages()
def resizeEvent(self, e):
OWWidget.resizeEvent(self,e)
self.updateGraph()
def closeEvent(self, ce):
# self.vizrank.close()
OWWidget.closeEvent(self, ce)
def setUp(self):
self.widget = OWWidget()
self.widget.foo = None
self.attrs = VariableListModel()
self.view = gui.listView(
self.widget.controlArea, self.widget, "foo", model=self.attrs)
def test_checked_extension(self):
widget = OWWidget()
widget.some_param = 0
widget.some_option = False
gui.doubleSpin(widget=widget, master=widget, value="some_param",
minv=1, maxv=10, checked="some_option")
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
self.gds_info: Optional[GDSInfo] = GDSInfo(
) # TODO: handle possible exceptions
self.gds_data: Optional[Table] = None
# Control area
box = widgetBox(self.controlArea, 'Info', addSpace=True)
self.infoBox = widgetLabel(box, 'Initializing\n\n')
box = widgetBox(self.controlArea, 'Output', addSpace=True)
radioButtonsInBox(box,
self,
'genes_as_rows',
['Samples in rows', 'Genes in rows'],
callback=self._run)
separator(box)
rubber(self.controlArea)
auto_commit(self.controlArea,
self,
'auto_commit',
'&Commit',
box=False)
# Main Area
# Filter widget
self.filter = lineEdit(self.mainArea,
self,
'search_pattern',
'Filter:',
callbackOnType=True,
callback=self._apply_filter)
self.mainArea.layout().addWidget(self.filter)
splitter_vertical = QSplitter(Qt.Vertical, self.mainArea)
self.mainArea.layout().addWidget(splitter_vertical)
# set table view
self.table_view = QTableView(splitter_vertical)
self.table_view.setShowGrid(False)
self.table_view.setSortingEnabled(True)
self.table_view.sortByColumn(1, Qt.AscendingOrder)
self.table_view.setAlternatingRowColors(True)
self.table_view.verticalHeader().setVisible(False)
self.table_view.setSelectionBehavior(QAbstractItemView.SelectRows)
self.table_view.setSelectionMode(QAbstractItemView.SingleSelection)
self.table_view.viewport().setMouseTracking(True)
self.table_view.setSizeAdjustPolicy(
QAbstractScrollArea.AdjustToContents)
self.table_model = GEODatasetsModel()
self.table_model.initialize(self.gds_info)
self.table_view.setModel(self.table_model)
self.table_model.show_table()
self.table_view.horizontalHeader().setStretchLastSection(True)
self.table_view.resizeColumnsToContents()
v_header = self.table_view.verticalHeader()
option = self.table_view.viewOptions()
size = self.table_view.style().sizeFromContents(
QStyle.CT_ItemViewItem, option, QSize(20, 20), self.table_view)
v_header.setDefaultSectionSize(size.height() + 2)
v_header.setMinimumSectionSize(5)
# set item delegates
self.table_view.setItemDelegateForColumn(
self.table_model.pubmedid_col,
LinkStyledItemDelegate(self.table_view))
self.table_view.setItemDelegateForColumn(
self.table_model.gds_id_col,
LinkStyledItemDelegate(self.table_view))
self.table_view.setItemDelegateForColumn(
self.table_model.indicator_col,
IndicatorItemDelegate(self.table_view, role=Qt.DisplayRole),
)
splitter_horizontal = QSplitter(Qt.Horizontal, splitter_vertical)
# Description Widget
box = widgetBox(splitter_horizontal, 'Description')
self.description_widget = widgetLabel(box, '')
self.description_widget.setWordWrap(True)
rubber(box)
# Sample Annotations Widget
box = widgetBox(splitter_horizontal, 'Sample Annotations')
self.annotations_widget = QTreeWidget(box)
self.annotations_widget.setHeaderLabels(
['Type (Sample annotations)', 'Sample count'])
self.annotations_widget.setRootIsDecorated(True)
box.layout().addWidget(self.annotations_widget)
self._annotations_updating = False
self.annotations_widget.itemChanged.connect(
self.on_annotation_selection_changed)
self.splitters = splitter_vertical, splitter_horizontal
for sp, setting in zip(self.splitters, self.splitter_settings):
sp.splitterMoved.connect(self._splitter_moved)
sp.restoreState(setting)
self.table_view.selectionModel().selectionChanged.connect(
self.on_gds_selection_changed)
self._apply_filter()
self._run()
def setUp(self):
self.table = ContingencyTable(OWWidget())
self.var1 = DiscreteVariable("char", ("a", "b"), ordered=True)
self.var2 = DiscreteVariable("num", ("0", "1"), ordered=True)
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
# Init data
self.data = None
self.selected_data = None
# used for transforming the 'selected data' into the 'data' domain
self.selected_data_transformed = None
self.results = Result()
# info box
fbox = gui.widgetBox(self.controlArea, "Info")
self.info_fil = gui.label(fbox, self, 'Words displayed: 0')
# Filtering settings
fbox = gui.widgetBox(self.controlArea, "Filter")
hbox = gui.widgetBox(fbox, orientation=0)
self.chb_p = gui.checkBox(hbox,
self,
"filter_by_p",
"p-value",
callback=self.filter_and_display,
tooltip="Filter by word p-value")
self.spin_p = gui.doubleSpin(hbox,
self,
'filter_p_value',
1e-4,
1,
step=1e-4,
labelWidth=15,
callback=self.filter_and_display,
tooltip="Max p-value for word")
self.spin_p.setEnabled(self.filter_by_p)
hbox = gui.widgetBox(fbox, orientation=0)
self.chb_fdr = gui.checkBox(hbox,
self,
"filter_by_fdr",
"FDR",
callback=self.filter_and_display,
tooltip="Filter by word FDR")
self.spin_fdr = gui.doubleSpin(hbox,
self,
'filter_fdr_value',
1e-4,
1,
step=1e-4,
labelWidth=15,
callback=self.filter_and_display,
tooltip="Max p-value for word")
self.spin_fdr.setEnabled(self.filter_by_fdr)
gui.rubber(self.controlArea)
# Word's list view
self.cols = ['Word', 'p-value', 'FDR']
self.sig_words = QTreeWidget()
self.sig_words.setColumnCount(len(self.cols))
self.sig_words.setHeaderLabels(self.cols)
self.sig_words.setSortingEnabled(True)
self.sig_words.setSelectionMode(QTreeView.NoSelection)
self.sig_words.sortByColumn(2, 0) # 0 is ascending order
for i in range(len(self.cols)):
self.sig_words.resizeColumnToContents(i)
self.mainArea.layout().addWidget(self.sig_words)
def showEvent(self, ev):
OWWidget.showEvent(self, ev)
self.updateGraph()
def __init__(self, parent=None, signalManager=None):
OWWidget.__init__(self, parent, signalManager, "Sieve diagram", True)
#self.controlArea.setMinimumWidth(250)
#set default settings
self.data = None
self.attrX = ""
self.attrY = ""
self.attrCondition = ""
self.attrConditionValue = ""
self.showLines = 1
self.showCases = 0
self.showInColor = 1
self.attributeSelectionList = None
self.stopCalculating = 0
self.canvas = QGraphicsScene()
self.canvasView = QGraphicsView(self.canvas, self.mainArea)
self.mainArea.layout().addWidget(self.canvasView)
self.canvasView.setVerticalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
self.canvasView.setHorizontalScrollBarPolicy(Qt.ScrollBarAlwaysOff)
#GUI
self.attrSelGroup = gui.widgetBox(self.controlArea,
box="Shown attributes")
self.attrXCombo = gui.comboBox(
self.attrSelGroup,
self,
value="attrX",
label="X attribute:",
orientation="horizontal",
tooltip="Select an attribute to be shown on the X axis",
callback=self.updateGraph,
sendSelectedValue=1,
valueType=str,
labelWidth=70)
self.attrYCombo = gui.comboBox(
self.attrSelGroup,
self,
value="attrY",
label="Y attribute:",
orientation="horizontal",
tooltip="Select an attribute to be shown on the Y axis",
callback=self.updateGraph,
sendSelectedValue=1,
valueType=str,
labelWidth=70)
gui.separator(self.controlArea)
self.conditionGroup = gui.widgetBox(self.controlArea, box="Condition")
self.attrConditionCombo = gui.comboBox(
self.conditionGroup,
self,
value="attrCondition",
label="Attribute:",
orientation="horizontal",
callback=self.updateConditionAttr,
sendSelectedValue=1,
valueType=str,
labelWidth=70)
self.attrConditionValueCombo = gui.comboBox(self.conditionGroup,
self,
value="attrConditionValue",
label="Value:",
orientation="horizontal",
callback=self.updateGraph,
sendSelectedValue=1,
valueType=str,
labelWidth=70)
gui.separator(self.controlArea)
box2 = gui.widgetBox(self.controlArea, box="Visual settings")
gui.checkBox(box2,
self,
"showLines",
"Show lines",
callback=self.updateGraph)
hbox = gui.widgetBox(box2, orientation="horizontal")
gui.checkBox(hbox,
self,
"showCases",
"Show data examples...",
callback=self.updateGraph)
gui.checkBox(hbox,
self,
"showInColor",
"...in color",
callback=self.updateGraph)
gui.separator(self.controlArea)
# self.optimizationDlg = OWSieveOptimization(self, self.signalManager)
# optimizationButtons = gui.widgetBox(self.controlArea, "Dialogs", orientation = "horizontal")
# gui.button(optimizationButtons, self, "VizRank", callback = self.optimizationDlg.reshow, debuggingEnabled = 0, tooltip = "Find attribute groups with highest value dependency")
gui.rubber(self.controlArea)
# self.wdChildDialogs = [self.optimizationDlg] # used when running widget debugging
# self.connect(self.graphButton, SIGNAL("clicked()"), self.saveToFileCanvas)
self.icons = gui.attributeIconDict
self.resize(800, 550)
random.seed()
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
self.corpus = None
# Browse file box
fbox = gui.widgetBox(self.controlArea, "Corpus file", orientation=0)
self.file_widget = widgets.FileWidget(
recent_files=self.recent_files,
icon_size=(16, 16),
on_open=self.open_file,
dialog_format=self.dlgFormats,
dialog_title='Open Orange Document Corpus',
reload_label='Reload',
browse_label='Browse',
allow_empty=False,
minimal_width=250,
)
fbox.layout().addWidget(self.file_widget)
# dropdown to select title variable
self.title_model = DomainModel(valid_types=(StringVariable, ),
placeholder="(no title)")
gui.comboBox(self.controlArea,
self,
"title_variable",
box="Title variable",
model=self.title_model,
callback=self.update_feature_selection)
# Used Text Features
fbox = gui.widgetBox(self.controlArea, orientation=0)
ubox = gui.widgetBox(fbox, "Used text features")
self.used_attrs_model = VariableListModel(enable_dnd=True)
self.used_attrs_view = VariablesListItemView()
self.used_attrs_view.setModel(self.used_attrs_model)
ubox.layout().addWidget(self.used_attrs_view)
aa = self.used_attrs_model
aa.dataChanged.connect(self.update_feature_selection)
aa.rowsInserted.connect(self.update_feature_selection)
aa.rowsRemoved.connect(self.update_feature_selection)
# Ignored Text Features
ibox = gui.widgetBox(fbox, "Ignored text features")
self.unused_attrs_model = VariableListModel(enable_dnd=True)
self.unused_attrs_view = VariablesListItemView()
self.unused_attrs_view.setModel(self.unused_attrs_model)
ibox.layout().addWidget(self.unused_attrs_view)
# Documentation Data Sets & Report
box = gui.hBox(self.controlArea)
self.browse_documentation = gui.button(
box,
self,
"Browse documentation corpora",
callback=lambda: self.file_widget.browse(get_sample_corpora_dir()),
autoDefault=False,
)
# load first file
self.file_widget.select(0)
def __init__(self, parent=None, signalManager = None):
OWWidget.__init__(self, parent, signalManager, "Scatterplot (Qt)", True)
##TODO tukaj mas testni graf!
self.graph = OWScatterPlotGraphQt_test(self, self.mainArea, "ScatterPlotQt_test")
#add a graph widget
##TODO pazi
# self.mainArea.layout().addWidget(self.graph.pgPlotWidget) # tale je zaresni
self.mainArea.layout().addWidget(self.graph.glw) # tale je testni
## TODO spodaj je se en POZOR, kjer nastavis palette
# self.vizrank = OWVizRank(self, self.signalManager, self.graph, orngVizRank.SCATTERPLOT, "ScatterPlotQt")
# self.optimizationDlg = self.vizrank
# local variables
self.showGridlines = 1
self.autoSendSelection = 1
self.toolbarSelection = 0
self.classificationResults = None
self.outlierValues = None
self.colorSettings = None
self.selectedSchemaIndex = 0
self.graph.sendSelectionOnUpdate = 0
self.attributeSelectionList = None
self.data = None
self.subsetData = None
#load settings
# self.loadSettings()
self.graph.setShowXaxisTitle()
self.graph.setShowYLaxisTitle()
# self.connect(self.graphButton, SIGNAL("clicked()"), self.graph.saveToFile)
box1 = gui.widgetBox(self.controlArea, "Axis Variables")
#x attribute
self.attrX = ""
self.attrXCombo = gui.comboBox(box1, self, "attrX", label="X-Axis:", labelWidth=50, orientation="horizontal", callback = self.majorUpdateGraph, sendSelectedValue = 1, valueType = str)
# y attribute
self.attrY = ""
self.attrYCombo = gui.comboBox(box1, self, "attrY", label="Y-Axis:", labelWidth=50, orientation="horizontal", callback = self.majorUpdateGraph, sendSelectedValue = 1, valueType = str)
box2 = gui.widgetBox(self.controlArea, "Point Properties")
self.attrColor = ""
self.attrColorCombo = gui.comboBox(box2, self, "attrColor", label="Color:", labelWidth=50, orientation="horizontal", callback = self.updateGraph, sendSelectedValue=1, valueType = str, emptyString = "(Same color)")
# labelling
self.attrLabel = ""
self.attrLabelCombo = gui.comboBox(box2, self, "attrLabel", label="Label:", labelWidth=50, orientation="horizontal", callback = self.updateGraph, sendSelectedValue = 1, valueType = str, emptyString = "(No labels)")
# shaping
self.attrShape = ""
self.attrShapeCombo = gui.comboBox(box2, self, "attrShape", label="Shape:", labelWidth=50, orientation="horizontal", callback = self.updateGraph, sendSelectedValue=1, valueType = str, emptyString = "(Same shape)")
# sizing
self.attrSize = ""
self.attrSizeCombo = gui.comboBox(box2, self, "attrSize", label="Size:", labelWidth=50, orientation="horizontal", callback = self.updateGraph, sendSelectedValue=1, valueType = str, emptyString = "(Same size)")
g = self.graph.gui
box3 = g.point_properties_box(self.controlArea)
# self.jitterSizeCombo = gui.comboBox(box3, self, "graph.jitter_size", label = 'Jittering size (% of size):'+' ', orientation = "horizontal", callback = self.resetGraphData, items = self.jitterSizeNums, sendSelectedValue = 1, valueType = float)
## TODO: jitter size slider ima samo interger values -> ali lahko slajda po self.jitterSizeNums
gui.hSlider(box3, self, value='graph.jitter_size', label='Jittering (%): ', minValue=1, maxValue=10, callback=self.resetGraphData)
gui.checkBox(gui.indentedBox(box3), self, 'graph.jitter_continuous', 'Jitter continuous values', callback = self.resetGraphData, tooltip = "Does jittering apply also on continuous attributes?")
gui.button(box3, self, "Set Colors", self.setColors, tooltip = "Set the canvas background color, grid color and color palette for coloring continuous variables")
box4 = gui.widgetBox(self.controlArea, "Plot Properties")
g.add_widgets([g.ShowLegend, g.ShowGridLines], box4)
# gui.comboBox(box4, self, "graph.tooltipKind", items = ["Don't Show Tooltips", "Show Visible Attributes", "Show All Attributes"], callback = self.updateGraph)
gui.checkBox(box4, self, value='graph.tooltipShowsAllAttributes', label='Show all attributes in tooltip')
box5 = gui.widgetBox(self.controlArea, "Auto Send Selected Data When...")
gui.checkBox(box5, self, 'autoSendSelection', 'Adding/Removing selection areas', callback = self.selectionChanged, tooltip = "Send selected data whenever a selection area is added or removed")
gui.checkBox(box5, self, 'graph.sendSelectionOnUpdate', 'Moving/Resizing selection areas', tooltip = "Send selected data when a user moves or resizes an existing selection area")
self.graph.selection_changed.connect(self.selectionChanged)
# zooming / selection
self.zoomSelectToolbar = g.zoom_select_toolbar(self.controlArea, buttons = g.default_zoom_select_buttons + [g.Spacing, g.ShufflePoints])
self.connect(self.zoomSelectToolbar.buttons[g.SendSelection], SIGNAL("clicked()"), self.sendSelections)
self.connect(self.zoomSelectToolbar.buttons[g.Zoom], SIGNAL("clicked()",), self.graph.zoomButtonClicked)
self.connect(self.zoomSelectToolbar.buttons[g.Pan], SIGNAL("clicked()",), self.graph.panButtonClicked)
self.connect(self.zoomSelectToolbar.buttons[g.Select], SIGNAL("clicked()",), self.graph.selectButtonClicked)
self.controlArea.layout().addStretch(100)
self.icons = gui.attributeIconDict
self.debugSettings = ["attrX", "attrY", "attrColor", "attrLabel", "attrShape", "attrSize"]
# self.wdChildDialogs = [self.vizrank] # used when running widget debugging
dlg = self.createColorDialog()
self.graph.contPalette = dlg.getContinuousPalette("contPalette")
self.graph.discPalette = dlg.getDiscretePalette("discPalette")
##TODO POZOR!
# p = self.graph.pgPlotWidget.palette()
p = self.graph.glw.palette()
p.setColor(OWPalette.Canvas, dlg.getColor("Canvas"))
p.setColor(OWPalette.Grid, dlg.getColor("Grid"))
self.graph.set_palette(p)
self.graph.enableGridXB(self.showGridlines)
self.graph.enableGridYL(self.showGridlines)
# self.graph.resize(700, 550)
self.mainArea.setMinimumWidth(700)
self.mainArea.setMinimumHeight(550)
def saveSettings(self):
OWWidget.saveSettings(self)
def saveSettings(self):
OWWidget.saveSettings(self)
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
self.data: Optional[Table] = None
self.attr_name_to_variable: Optional[Table] = None
self.covariates_from_worker_result = None
self.time_var: Optional[str] = None
self.event_var: Optional[str] = None
gui.rubber(self.controlArea)
sel_method_box = gui.vBox(self.buttonsArea, 'Select Attributes')
grid = QGridLayout()
grid.setContentsMargins(0, 0, 0, 0)
grid.setSpacing(6)
self.select_buttons = QButtonGroup()
self.select_buttons.buttonClicked[int].connect(
self.set_selection_method)
def button(text, buttonid, toolTip=None):
b = QRadioButton(text)
self.select_buttons.addButton(b, buttonid)
if toolTip is not None:
b.setToolTip(toolTip)
return b
b1 = button(self.tr('None'), OWRankSurvivalFeatures.select_none)
b2 = button(self.tr('Manual'), OWRankSurvivalFeatures.manual_selection)
b3 = button(self.tr('Best ranked:'),
OWRankSurvivalFeatures.select_n_best)
s = gui.spin(
sel_method_box,
self,
'n_selected',
1,
999,
callback=lambda: self.set_selection_method(OWRankSurvivalFeatures.
select_n_best),
addToLayout=False,
)
grid.addWidget(b1, 0, 0)
grid.addWidget(b2, 1, 0)
grid.addWidget(b3, 2, 0)
grid.addWidget(s, 2, 1)
sel_method_box.layout().addLayout(grid)
self.commit_button = gui.auto_commit(self.buttonsArea,
self,
'auto_commit',
'&Commit',
box=False)
# Main area
self.model = PyTableModel(parent=self)
self.table_view = TableView(parent=self)
self.table_view.setModel(self.model)
self.model.setHorizontalHeaderLabels([
'Log-Likelihood', 'Log-Likelihood Ratio', f'{"p".center(13)}',
'FDR'
])
self.table_view.setSizeAdjustPolicy(
QAbstractScrollArea.AdjustToContentsOnFirstShow)
self.table_view.selectionModel().selectionChanged.connect(
self.on_select)
def _set_select_manual():
self.set_selection_method(OWRankSurvivalFeatures.manual_selection)
self.table_view.manualSelection.connect(_set_select_manual)
self.table_view.verticalHeader().sectionClicked.connect(
_set_select_manual)
self.mainArea.layout().addWidget(self.table_view)
def showEvent(self, ev):
OWWidget.showEvent(self, ev)
self.updateGraph()
def __init__(self):
OWWidget.__init__(self)
ConcurrentWidgetMixin.__init__(self)
# ATTRIBUTES #
self.target_database = ENTREZ_ID
# input data
self.input_data = None
self.input_genes = None
self.tax_id = None
self.column_candidates = []
# input options
self.organisms = []
# gene matcher
self.gene_matcher = None
# progress bar
self.progress_bar = None
self._timer = QTimer()
self._timer.timeout.connect(self._apply_filter)
self._timer.setSingleShot(True)
# GUI SECTION #
# Control area
self.info_box = widgetLabel(
widgetBox(self.controlArea, "Info", addSpace=True),
'No data on input.\n')
organism_box = vBox(self.controlArea, 'Organism')
self.organism_select_combobox = comboBox(
organism_box,
self,
'selected_organism',
callback=self.on_input_option_change)
self.get_available_organisms()
self.organism_select_combobox.setCurrentIndex(self.selected_organism)
box = widgetBox(self.controlArea, 'Gene IDs in the input data')
self.gene_columns_model = itemmodels.DomainModel(
valid_types=(StringVariable, DiscreteVariable))
self.gene_column_combobox = comboBox(
box,
self,
'selected_gene_col',
label='Stored in data column',
model=self.gene_columns_model,
sendSelectedValue=True,
callback=self.on_input_option_change,
)
self.attr_names_checkbox = checkBox(
box,
self,
'use_attr_names',
'Stored as feature (column) names',
disables=[(-1, self.gene_column_combobox)],
callback=self.on_input_option_change,
)
self.gene_column_combobox.setDisabled(bool(self.use_attr_names))
output_box = vBox(self.controlArea, 'Output')
# separator(output_box)
# output_box.layout().addWidget(horizontal_line())
# separator(output_box)
self.exclude_radio = checkBox(output_box,
self,
'exclude_unmatched',
'Exclude unmatched genes',
callback=self.commit)
self.replace_radio = checkBox(output_box,
self,
'replace_id_with_symbol',
'Replace feature IDs with gene names',
callback=self.commit)
auto_commit(self.controlArea,
self,
"auto_commit",
"&Commit",
box=False)
rubber(self.controlArea)
# Main area
self.filter = lineEdit(self.mainArea,
self,
'search_pattern',
'Filter:',
callbackOnType=True,
callback=self.handle_filter_callback)
# rubber(self.radio_group)
self.mainArea.layout().addWidget(self.filter)
# set splitter
self.splitter = QSplitter()
self.splitter.setOrientation(Qt.Vertical)
self.table_model = GeneInfoModel()
self.table_view = QTableView()
self.table_view.setAlternatingRowColors(True)
self.table_view.viewport().setMouseTracking(True)
self.table_view.setSortingEnabled(True)
self.table_view.setShowGrid(False)
self.table_view.verticalHeader().hide()
# self.table_view.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
self.unknown_model = UnknownGeneInfoModel()
self.unknown_view = QTableView()
self.unknown_view.setModel(self.unknown_model)
self.unknown_view.verticalHeader().hide()
self.unknown_view.setShowGrid(False)
self.unknown_view.setSelectionMode(QAbstractItemView.NoSelection)
self.unknown_view.horizontalHeader().setSectionResizeMode(
QHeaderView.Stretch)
self.splitter.addWidget(self.table_view)
self.splitter.addWidget(self.unknown_view)
self.splitter.setStretchFactor(0, 90)
self.splitter.setStretchFactor(1, 10)
self.mainArea.layout().addWidget(self.splitter)
