def OnSetShiftField(self, event):
fdialog = wx.FileDialog(None, 'Select shift field',
wildcard='*.sf', style=wx.OPEN, defaultDir = nameUtils.genShiftFieldDirectoryPath())
succ = fdialog.ShowModal()
if (succ == wx.ID_OK):
sfname = fdialog.GetPath().encode()
self.SetShiftField(sfname)
def OnSetShiftField(self, event):
fdialog = wx.FileDialog(
None,
'Select shift field',
wildcard='*.sf',
style=wx.OPEN,
defaultDir=nameUtils.genShiftFieldDirectoryPath())
succ = fdialog.ShowModal()
if (succ == wx.ID_OK):
sfname = fdialog.GetPath().encode()
self.SetShiftField(sfname)
def OnSetShiftField(self, event=None):
from PYME.FileUtils import nameUtils
fdialog = wx.FileDialog(None, 'Please select shift field to use ...',
wildcard='Shift fields|*.sf', style=wx.OPEN, defaultDir = nameUtils.genShiftFieldDirectoryPath())
succ = fdialog.ShowModal()
if (succ == wx.ID_OK):
#self.ds = example.CDataStack(fdialog.GetPath().encode())
#self.ds =
sfFilename = fdialog.GetPath()
self.image.mdh.setEntry('chroma.ShiftFilename', sfFilename)
dx, dy = np.load(sfFilename)
self.image.mdh.setEntry('chroma.dx', dx)
self.image.mdh.setEntry('chroma.dy', dy)
#self.md.setEntry('PSFFile', psfFilename)
#self.stShiftFieldName.SetLabel('Shifts: %s' % os.path.split(sfFilename)[1])
#self.stShiftFieldName.SetForegroundColour(wx.Colour(0, 128, 0))
return True
else:
return False
def OnSetShiftField(self, event=None):
from PYME.FileUtils import nameUtils
fdialog = wx.FileDialog(
None,
'Please select shift field to use ...',
wildcard='Shift fields|*.sf',
style=wx.OPEN,
defaultDir=nameUtils.genShiftFieldDirectoryPath())
succ = fdialog.ShowModal()
if (succ == wx.ID_OK):
#self.ds = example.CDataStack(fdialog.GetPath().encode())
#self.ds =
sfFilename = fdialog.GetPath()
self.image.mdh.setEntry('chroma.ShiftFilename', sfFilename)
dx, dy = np.load(sfFilename)
self.image.mdh.setEntry('chroma.dx', dx)
self.image.mdh.setEntry('chroma.dy', dy)
#self.md.setEntry('PSFFile', psfFilename)
#self.stShiftFieldName.SetLabel('Shifts: %s' % os.path.split(sfFilename)[1])
#self.stShiftFieldName.SetForegroundColour(wx.Colour(0, 128, 0))
return True
else:
return False
def OnGenShiftmapQuad(self, event):
from PYME.Analysis import twoColour, twoColourPlot
pipeline = self.visFr.pipeline
vs = [pipeline.mdh['voxelsize.x']*1e3, pipeline.mdh['voxelsize.y']*1e3, 200.]
x0 = (pipeline.mdh['Camera.ROIPosX'] -1)*vs[0]
y0 = (pipeline.mdh['Camera.ROIPosY'] -1)*vs[1]
lx = len(pipeline.filter['x'])
bbox = None#[0,(pipeline.mdh['Camera.ROIWidth'] + 1)*vs[0], 0,(pipeline.mdh['Camera.ROIHeight'] + 1)*vs[1]]
dx, dy, spx, spy, good = twoColour.genShiftVectorFieldQ(pipeline.filter['x']+.1*pylab.randn(lx) + x0, pipeline.filter['y']+.1*pylab.randn(lx) + y0, pipeline.filter['fitResults_dx'], pipeline.filter['fitResults_dy'], pipeline.filter['fitError_dx'], pipeline.filter['fitError_dy'], bbox=bbox)
#twoColourPlot.PlotShiftField(dx, dy, spx, spy)
twoColourPlot.PlotShiftField2(spx, spy, pipeline.mdh['Splitter.Channel0ROI'][2:], voxelsize=vs)
twoColourPlot.PlotShiftResiduals(pipeline['x'][good] + x0, pipeline['y'][good] + y0, pipeline['fitResults_dx'][good], pipeline['fitResults_dy'][good], spx, spy)
import cPickle
defFile = os.path.splitext(os.path.split(self.visFr.GetTitle())[-1])[0] + '.sf'
fdialog = wx.FileDialog(None, 'Save shift field as ...',
wildcard='Shift Field file (*.sf)|*.sf', style=wx.SAVE|wx.HIDE_READONLY, defaultDir = nameUtils.genShiftFieldDirectoryPath(), defaultFile=defFile)
succ = fdialog.ShowModal()
if (succ == wx.ID_OK):
fpath = fdialog.GetPath()
#save as a pickle containing the data and voxelsize
fid = open(fpath, 'wb')
cPickle.dump((spx, spy), fid, 2)
fid.close()
