def file_list(username, root_wf_id, wf_id, path=""):
try:
dashboard = Dashboard(g.master_db_url, root_wf_id, wf_id=wf_id)
details = dashboard.get_workflow_details(wf_id)
submit_dir = details.submit_dir
if os.path.isdir(submit_dir):
dest = os.path.join(submit_dir, path)
if os.path.isfile(dest):
return "", 204
folders = {"dirs": [], "files": []}
for entry in os.listdir(dest):
if os.path.isdir(os.path.join(dest, entry)):
folders["dirs"].append(os.path.normpath(os.path.join(path, entry)))
else:
folders["files"].append(os.path.normpath(os.path.join(path, entry)))
return serialize(folders), 200, {"Content-Type": "application/json"}
else:
raise ServiceError(
ErrorResponse(
"SUBMIT_DIR_NOT_FOUND",
"%r is not a valid directory" % str(submit_dir),
)
)
except NoResultFound:
return render_template("error/workflow/workflow_details_missing.html")
return "Error", 500
def file_list(username, root_wf_id, wf_id, path=''):
try:
dashboard = Dashboard(g.master_db_url, root_wf_id, wf_id=wf_id)
details = dashboard.get_workflow_details(wf_id)
submit_dir = details.submit_dir
if os.path.isdir(submit_dir):
dest = os.path.join(submit_dir, path)
if os.path.isfile(dest):
return '', 204
folders = {
'dirs': [],
'files': []
}
for entry in os.listdir(dest):
if os.path.isdir(os.path.join(dest, entry)):
folders['dirs'].append(os.path.normpath(os.path.join(path, entry)))
else:
folders['files'].append(os.path.normpath(os.path.join(path, entry)))
return json.dumps(folders), 200, {'Content-Type': 'application/json'}
else:
raise ServiceError(ErrorResponse('SUBMIT_DIR_NOT_FOUND', '%r is not a valid directory' % str(submit_dir)))
except NoResultFound:
return render_template('error/workflow/workflow_details_missing.html')
return 'Error', 500
def file_browser(username, root_wf_id, wf_id):
try:
dashboard = Dashboard(g.master_db_url, root_wf_id, wf_id=wf_id)
details = dashboard.get_workflow_details(wf_id)
submit_dir = details.submit_dir
if os.path.isdir(submit_dir):
init_file = request.args.get("init_file", None)
return render_template(
"file-browser.html",
root_wf_id=root_wf_id,
wf_id=wf_id,
init_file=init_file,
)
else:
raise ServiceError(
ErrorResponse(
"SUBMIT_DIR_NOT_FOUND",
"%r is not a valid directory" % str(submit_dir),
)
)
except NoResultFound:
return render_template("error/workflow/workflow_details_missing.html")
return "Error", 500
def file_list(username, root_wf_id, wf_id):
try:
dashboard = Dashboard(g.master_db_url, root_wf_id, wf_id=wf_id)
details = dashboard.get_workflow_details(wf_id)
submit_dir = details.submit_dir
if os.path.isdir(submit_dir):
folders = {}
for folder, sub_folders, files in os.walk(submit_dir):
folder = '/' + folder.replace(submit_dir, '', 1).lstrip('/')
folders[folder] = {'D': [], 'F': files}
for sub_folder in sub_folders:
full_sub_folder = os.path.normpath(
os.path.join(folder, sub_folder))
folders[folder]['D'].append(full_sub_folder)
return json.dumps(folders), 200, {
'Content-Type': 'application/json'
}
else:
raise ServiceError(
ErrorResponse('SUBMIT_DIR_NOT_FOUND',
'%r is not a valid directory' % str(submit_dir)))
except NoResultFound:
return render_template('error/workflow/workflow_details_missing.html')
return 'Error', 500
def catch_all(error):
app_code, http_code = error.codes if hasattr(error, 'codes') else ('UNKNOWN', 500)
log.exception(app_code)
e = ErrorResponse(app_code, error.message)
response_json = jsonify(e)
return make_response(response_json, http_code, JSON_HEADER)
def catch_all(error):
log.exception(error)
app_code, http_code = error.codes if hasattr(error, "codes") else ("UNKNOWN", 500)
e = ErrorResponse(app_code, str(error))
response_json = jsonify(e)
return make_response(response_json, http_code, JSON_HEADER)
def invalid_json_error(error):
e = ErrorResponse('INVALID_JSON', error.message)
response_json = jsonify(e)
return make_response(response_json, 400, JSON_HEADER)
def no_result_found(error):
e = ErrorResponse('NOT_FOUND', error.message)
response_json = jsonify(e)
return make_response(response_json, 404, JSON_HEADER)
def invalid_json_error(error):
e = ErrorResponse("INVALID_JSON", str(error))
response_json = jsonify(e)
return make_response(response_json, 400, JSON_HEADER)
def no_result_found(error):
e = ErrorResponse("NOT_FOUND", str(error))
response_json = jsonify(e)
return make_response(response_json, 404, JSON_HEADER)