def __init__(self, func=None): MVCommand.__init__(self) self.ifd = None self.resolutions={"very smooth":-0.1, "medium smooth": -0.3, "smooth": -0.5} self.resolution_type = "medium smooth" self.surf_resolution = self.resolutions[self.resolution_type] self.isovalue=self.piecewiseLinearInterpOnIsovalue(self.surf_resolution) self.isovalue_type = "fast approximation" self.precise_isovalues = {} self.custom_isovalue_flag = 0 self.custom_resolution_flag = 0 self.surfName = "CoarseMolSurface" self.surfNameList = [] self.mol_surfNames = {} self.CSparams = {} # used to store arguemnts to save session self.molName = None self.selection = None self.atomSet = None self.bindGeom = True self.perMol = True self.immediate = False self.gridSize = (32, 32, 32) self.buildFormFlag = False self.newSelection =False self.padding = 0.0 self.surfaces = None self.UTblurData = None self.UTisocontourData = None self.isoCoords = None self.isoIndices = None self.isoNormals = None
def __init__(self, func=None): MVCommand.__init__(self) self.cms_network = None self.ifd = None self.resolutions={"very smooth":-0.1, "medium smooth": -0.3, "smooth": -0.5} self.resolution_type = "medium smooth" self.surf_resolution = self.resolutions[self.resolution_type] self.isovalue=1 self.isovalue_type = "fast approximation" self.precise_isovalues = {} self.custom_isovalue_flag = 0 self.custom_resolution_flag = 0 self.surfName = None self.surfNameList = [] self.mol_surfNames = {} self.molName = None self.selection = None self.atomSet = None self.bindGeom = True self.bindFlag = Tkinter.BooleanVar() self.bindFlag.set(self.bindGeom) self.perMol = True self.immediate = False self.network_nodes = {"gridSize":[2, 'Dial'], "resolution":[3,'UT Blur'], "isovalue": [4, 'UT-Isocontour'], "surfName": [5, self.surfName]} self.gridSize = (32, 32, 32) self.buildFormFlag = False self.newSelection =False self.padding = 0.0 self.surface = None self.checkComponentsFlag = Tkinter.BooleanVar() self.checkComponentsFlag.set(False)
def __init__(self): MVCommand.__init__(self) self.views = {} self.viewsDirectors = {} self.representations = {} self.allViews = 0 self.form = None self.idf = None
def __init__(self, func=None): MVCommand.__init__(self, func) MVAtomICOM.__init__(self) self.atomList = [] self.atomCenters = [] self.labelStrs = [] self.labelCenters = [] self.lineVertices = [] self.snakeLength = 4 self.continuousUpdate = 0
def __init__(self): "Constructor for Nucleic_Acids_properties" MVCommand.__init__(self) self.color_A = [1,0,0] self.color_C = [1,1,0] self.color_U = [1,0.5,0] self.color_G = [0,0,1] self.color_T = [0,1,0] self.scale_purine = self.scale_pyrimidine = 1.3 self.height_purine = self.height_pyrimidine = 0.4 self.color_backbone = 1
def __init__(self): "Constructor for Nucleic_Acids_properties" MVCommand.__init__(self) self.color_A = [1, 0, 0] self.color_C = [1, 1, 0] self.color_U = [1, 0.5, 0] self.color_G = [0, 0, 1] self.color_T = [0, 1, 0] self.scale_purine = self.scale_pyrimidine = 1.3 self.height_purine = self.height_pyrimidine = 0.4 self.color_backbone = 1
def __init__(self): """ constructor """ MVCommand.__init__(self) # iformStatus tells if these exist and if the widgets are visible self.iFormStatus = {'columnspecs':0, 'columnwidgets':0, 'cwidgetsshow':0, 'indexspecs':0, 'indexwidgets':0, 'iwidgetsshow':0} self.maxIndex = None self.active = 0 self.ccurSpecFile = '' self.icurSpecFile = ''
def __init__(self, func=None): #print "LabelByProperties.__init__"#, self MVCommand.__init__(self, func) MVAtomICOM.__init__(self) self.flag = self.flag | self.negateKw self.flag = self.flag | self.objArgOnly self.colorDict={'red':(1,0,0), 'green':(0,1,0), 'blue':(0,0,1), 'yellow':(1,1,0), 'cyan':(0,1,1), 'white':(1,1,1), 'fushia':(1.,0.,0.5), 'purple':(1.,0.,1.), 'orange':(1.,0.6,0.)} self.lastGeomOwnGuiShown = None
def __init__(self, func=None): MVCommand.__init__(self, func) MVAtomICOM.__init__(self) self.refAtomList = [] self.inAtomList = [] #self.superImposedPairs = {} self.newPairs = {} self.pair = [] self.mobMolName = None self.refMolName = None self.filters = {'CA Atoms':lambda x: x.name == 'CA', 'Backbone Atoms': lambda x: x.name in ['CA', 'C', 'N', 'O', 'CA@A','C@A', 'N@A','O@A'], 'Heavy Atoms': lambda x: not x.element == 'H', 'All Atoms': None} self.defaultFilter = 'Backbone Atoms'
def __init__(self, func=None): MVCommand.__init__(self, func=None) otherKeys = ['Escape', 'F1', 'F2', 'F3', 'F4', 'F5', 'F6', 'F7', 'F8', 'F9', 'Tab', 'space', 'Return', 'Insert', 'Delete', 'Home', 'End', 'Prior', 'Next', 'Up', 'Down', 'Left', 'Right', 'Caps_Lock', 'Num_Lock', 'BackSpace'] self.bindings = {} for key in string.letters+string.digits: self.bindings[key] = {'None':None, 'Shift_L':None,\ 'Control_L':None, 'Alt_L':None, 'Shift_R':None, 'Control_R':None, 'Alt_R':None } for key in otherKeys: self.bindings[key] = {'None':None, 'Shift_L':None,\ 'Control_L':None, 'Alt_L':None, 'Shift_R':None, 'Control_R':None, 'Alt_R':None }
def __init__(self): MVCommand.__init__(self) rc = getResourceFolderWithVersion() + os.sep + 'ws' + os.sep if not os.path.exists(rc): os.mkdir(rc) self.proxy_gama = rc + 'proxy_gama' self.rc_ad = rc + "rc_ad" self.login = False if hasattr(self, 'vf.GUI.ROOT'): self.dpf = Tkinter.StringVar(self.vf.GUI.ROOT) self.gpf = Tkinter.StringVar(self.vf.GUI.ROOT) self.prev_dir = Tkinter.StringVar(self.vf.GUI.ROOT) self.ad_radio = Tkinter.IntVar(self.vf.GUI.ROOT) else: self.dpf = Tkinter.StringVar() self.gpf = Tkinter.StringVar() self.prev_dir = Tkinter.StringVar() self.ad_radio = Tkinter.IntVar() self.current_job = None
def __init__(self): MVCommand.__init__(self) self.obj_dict = {} #keys - full names of the Viewer objects #values - {'copy_obj': IndexedPolygon(new instance from # asIndexedPolygons()), # 'v_f': tuple of num_of_verts, num_of_faces of original # object}. self.setdict = {} #keys - as above; #values - built Bsp trees for objects. self.cl_atoms = {} self.isDisplayed = 0 self.currOptn = Tkinter.StringVar() self.currOptn.set("union") self.recomputeBSPT1 = Tkinter.IntVar() self.recomputeBSPT1.set(0) self.recomputeBSPT2 = Tkinter.IntVar() self.recomputeBSPT2.set(0) self.bindToMol = Tkinter.IntVar() self.bindToMol.set(0) self.newobj_name = Tkinter.StringVar()
def __init__(self): MVCommand.__init__(self)
def __init__(self): """Constructor for class About""" MVCommand.__init__(self) self.master = None
def __init__(self): self.form = None MVCommand.__init__(self)
def __init__(self): MVCommand.__init__(self) self.recorder = None self.gui = None self.camera = None
def __init__(self, func=None): MVCommand.__init__(self, func) self.undoRenderingStack = []
def __init__(self): MVCommand.__init__(self) self.trajectory = None self.player = None self.isDisplayed = 0 self.ifd =None
def __init__(self, func=None): MVCommand.__init__(self, func) self.flag = self.flag | self.objArgOnly self.options = {"fiberform": "M1"} #default options self.postdicionary = {}
def __init__(self,alignment=None,vf=None,name=None,**kw): MVCommand.__init__(self) self.vf = vf AlignmentEditor.__init__(self,alignment=alignment,master=vf.GUI.ROOT, name=name) self.addPmvMenu()
def __init__(self): MVCommand.__init__(self) self.fileTypes =[('VU file',"*.vu")] self.fileBrowserTitle = "Read VU File" self.lastDir = "."
def __init__(self): MVCommand.__init__(self) self.trajFile = None
def __init__(self): MVCommand.__init__(self) self.isDisplayed=0
def __init__(self, func=None): MVCommand.__init__(self, func) self.flag = self.flag | self.objArgOnly self.options= {"fiberform":"M1"}#default options self.postdicionary={}
def __init__(self, func=None): MVCommand.__init__(self, func) MVAtomICOM.__init__(self) self.atomList = AtomSet([]) self.undoAtList = AtomSet([]) self.labelStrs = []
def __init__(self, func = None): MVCommand.__init__(self, func) MVBondICOM.__init__(self) self.pickLevel = 'parts' self.undoBondList = []
def __init__(self, func=None): MVCommand.__init__(self, func) self.flag = self.flag | self.objArgOnly
def __init__(self): MVCommand.__init__(self) self.fileTypes = [('VU file', "*.vu")] self.fileBrowserTitle = "Read VU File" self.lastDir = "."
def __init__(self, func=None): MVCommand.__init__(self, func) MVBondICOM.__init__(self) self.pickLevel = 'parts' self.undoBondList = []
def __init__(self, func=None): MVCommand.__init__(self, func) MVAtomICOM.__init__(self) self.flag = self.flag | self.objArgOnly
def __init__(self, func=None): MVCommand.__init__(self, func) self.root = None self.lib = None # will point to pmvlib self.ed = None # VisualProgrammingEnvironment object
def __init__(self, func=None): MVCommand.__init__(self, func) MVAtomICOM.__init__(self) self.save = None self.showPlayer = False self.floodFile = None
def __init__(self, func=None): MVCommand.__init__(self, func) self.flag = self.flag | self.objArgOnly self.apgui = None
def __init__(self): MVCommand.__init__(self) self.isDisplayed = 0
def __init__(self, func=None): MVCommand.__init__(self, func)
def __init__(self, func=None): MVCommand.__init__(self, func) self.floodFile = None