def test_add_resource_on_request_with_subrequest(self):
"""Check, if a resource added at a main request is picked up from a
subrequest for creating the header scripts section.
"""
req = self.layer['request']
# create a subrequest.
subreq = req.clone()
subreq['PARENT_REQUEST'] = req
# add a resource to main request
add_resource_on_request(req, 'foo')
scripts = ScriptsView(self.layer['portal'], subreq, None)
scripts.update()
results = scripts.scripts()
self.assertEqual(
results[-1], {
'src': 'http://nohost/plone/++resource++foo.js',
'conditionalcomment': '',
'resetrjs': False,
'bundle': 'none',
})
styles = StylesView(self.layer['portal'], subreq, None)
styles.update()
results = styles.styles()
self.assertEqual(
filter(lambda it: 'foo' in it['src'], results)[0], {
'src': 'http://nohost/plone/++resource++foo.css',
'conditionalcomment': '',
'rel': 'stylesheet',
'bundle': 'none',
})
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'castle-components-manage-archives')
if self.request.form.get('api'):
self.request.response.setHeader('Content-type', 'application/json')
return json.dumps(AWSApi(self.context, self.request)())
return self.index()
def test_request_resources(self):
add_resource_on_request(self.layer['request'], 'foo')
scripts = ScriptsView(self.layer['portal'], self.layer['request'], None)
scripts.update()
results = scripts.scripts()
self.assertEqual(
results[-1], {'src': 'http://nohost/plone/++resource++foo.js',
'conditionalcomment': '',
'bundle': 'none'})
def __call__(self):
if api.user.is_anonymous():
self.request.response.redirect(
self.context.absolute_url() +
'/login_form?came_from=./@@show-reservations')
else:
# load JS resources
add_resource_on_request(self.request, 'unikold.timeslots')
return super(ShowReservationsView, self).__call__()
def test_request_resources(self):
add_resource_on_request(self.layer['request'], 'foo')
scripts = ScriptsView(self.layer['portal'], self.layer['request'], None)
scripts.update()
results = scripts.scripts()
self.assertEqual(
results[-1], {'src': 'http://nohost/plone/++resource++foo.js',
'conditionalcomment': '',
'bundle': 'none'})
def __call__(self, *args, **kwargs):
add_resource_on_request(self.request, 'untitled-js')
current_user = api.user.get_current()
roles = api.user.get_roles(user=current_user)
if 'Participant_Applicant' in roles:
owner = self.context.getOwner()
if not current_user.getId() == owner.getId():
msg = "You cannot edit an OIE Participant Application which you do not own." # noqa
return msg
return super(ParticipantEditForm, self).__call__(*args, **kwargs)
def setup(self):
self.portal_state = queryMultiAdapter(
(self.context, self.request), name='plone_portal_state',
)
self.registry = getUtility(IRegistry)
self._get_data()
if PLONE_5:
from Products.CMFPlone.resources import add_resource_on_request
if self.use_fotorama():
add_resource_on_request(self.request, 'psplonefotorama')
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'castle-components-history')
alsoProvides(self.request, IDisableCSRFProtection)
self.version_info = None
for version in self.versions:
if str(version['version_id']) == self.request.form.get('version'):
self.version_info = version
return self.template()
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'castle-components-review-archives')
extend = self.request.form.get('extend')
if extend:
obj = uuidToObject(extend)
obj.setModificationDate(DateTime())
obj.reindexObject(idxs=['modified'])
return self.json_dump()
return self.index()
def render_widget(self, widget):
add_resource_on_request(self.request, 'pkanwidgets')
title = translate(
'heading_add_item',
domain='plone',
mapping={'itemtype': self.portal_type_name},
context=self.request,
default='Add ${itemtype}',
)
return MARKUP.format(
klass=u'context',
title=title,
url=self.add_url,
widget=widget,
)
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'castle-components-audit')
self._user_cache = {}
self.site_path = '/'.join(self.context.getPhysicalPath())
try:
results = self.do_query()
self.results = results['hits']['hits']
self.total = results['hits']['total']['value']
if 'Export' in self.request.form.get('export', ''):
return self.export()
except Exception:
self.inner_template = self.error_template
return super(AuditView, self).__call__()
def setup(self):
self.registry = getUtility(IRegistry) # noqa
if PLONE_5:
from Products.CMFPlone.resources import add_resource_on_request
if self.use_fotorama():
add_resource_on_request(self.request, 'psplonefotorama')
try:
pkg_resources.get_distribution('ps.plone.realestatefont')
except pkg_resources.DistributionNotFound:
pass
else:
from Products.GenericSetup.tool import UNKNOWN
setup = plone_api.portal.get_tool(name='portal_setup')
profile = 'profile-ps.plone.realestatefont:default'
if setup.getLastVersionForProfile(profile) != UNKNOWN:
add_resource_on_request(
self.request,
'psplonerealestatefont',
)
def rich_text_args(self):
args = super(RichTextWidget, self)._base_args()
args['name'] = self.name
value = self.value and self.value.raw_encoded or ''
args['value'] = (self.request.get(self.field.getName(),
value)).decode('utf-8')
args.setdefault('pattern_options', {})
# displays tinymce editor for anonymous users
if api.user.is_anonymous():
add_resource_on_request(self.request,
'mockup-patterns-tinymce-logged-out')
merged_options = dict_merge(
get_tinymce_options(self.context, self.field, self.request), # noqa
args['pattern_options'])
args['pattern_options'] = merged_options
return args
def test_add_resource_on_request_with_subrequest(self):
"""Check, if a resource added at a main request is picked up from a
subrequest for creating the header scripts section.
"""
req = self.layer['request']
# create a subrequest.
subreq = req.clone()
subreq['PARENT_REQUEST'] = req
# add a resource to main request
add_resource_on_request(req, 'foo')
scripts = ScriptsView(self.layer['portal'], subreq, None)
scripts.update()
results = scripts.scripts()
self.assertEqual(
results[-1],
{
'src': 'http://nohost/plone/++resource++foo.js',
'conditionalcomment': '',
'resetrjs': False,
'bundle': 'none',
}
)
styles = StylesView(self.layer['portal'], subreq, None)
styles.update()
results = styles.styles()
self.assertEqual(
filter(lambda it: 'foo' in it['src'], results)[0],
{
'src': 'http://nohost/plone/++resource++foo.css',
'conditionalcomment': '',
'rel': 'stylesheet',
'bundle': 'none',
}
)
def render(self):
widget = super(RelatedItemsWidget, self).render()
if self.mode != 'input':
return widget
if self.content_type is None:
return widget
add_resource_on_request(self.request, 'ploneformwidgetrelateditems')
title = translate(
'heading_add_item',
domain='plone',
mapping={'itemtype': self.portal_type_name},
context=self.request,
default='Add ${itemtype}',
)
return MARKUP.format(
klass=u'context',
title=title,
url=self.add_url,
widget=widget,
)
def render_widget(self, widget):
add_resource_on_request(self.request, 'pkanpatterncontentloaderform')
title = translate(
'heading_preview',
domain='pkan.widgets',
mapping={},
context=self.request,
default='Update Preview',
)
if self.form.ignoreContext:
context_url = ''
else:
try:
context_url = self.context.absolute_url()
except AttributeError:
if getattr(self.form, 'parentForm', None):
context_url = self.form.parentForm.context.absolute_url()
else:
context_url = self.form.context.absolute_url()
url = '/'.join([
context_url,
'@@harvester_preview',
])
preview_url = url
return MARKUP.format(
klass=u'context',
preview_url=preview_url,
title=title,
url=url,
widget=widget,
form_id=self.form.id,
query_id=self.id,
target_id=self.id + '__preview',
)
def __call__(self):
add_resource_on_request(self.request, "iframeResizer")
return super(IssueView, self).__call__()
def __init__(self, context, request):
# Each view instance receives context and request as construction parameters
self.context = context
self.request = request
add_resource_on_request(self.request, 'load-more')
def __call__(self):
self._update()
add_resource_on_request(self.request, 'documentviewer')
self.site = api.portal.get()
self.settings = Settings(self.context)
self.global_settings = GlobalSettings(self.site)
self.portal_url = getMultiAdapter(
(self.context, self.request),
name="plone_portal_state").portal_url()
self.dvstatic = "%s/++resource++dv.resources" % (
self.portal_url)
resource_url = self.global_settings.override_base_resource_url
rel_url = storage.getResourceRelURL(gsettings=self.global_settings,
settings=self.settings)
if resource_url:
self.dvpdffiles = '%s/%s' % (resource_url.rstrip('/'), rel_url)
else:
self.dvpdffiles = '%s/%s' % (self.portal_url, rel_url)
utils = getToolByName(self.context, 'plone_utils')
msg = None
self.enabled = True
if allowedDocumentType(self.context,
self.global_settings.auto_layout_file_types):
if not self.installed:
msg = _("Since you do not have docsplit installed on this "
"system, we can not render the pages of this document.")
if self.settings.converting is not None and \
self.settings.converting:
if self.settings.successfully_converted:
# there is a version that is already converted, show it.
self.enabled = True
msg = _("A new conversion to the Document Viewer "
"is currently being generated for this document."
)
else:
msg = _("The document is currently being converted to the "
"Document Viewer view.")
self.enabled = False
elif self.settings.successfully_converted is not None and \
not self.settings.successfully_converted:
msg = _("There was an error trying to convert the document. "
"Maybe the document is encrypted, corrupt or "
"malformed? Check log for details.")
self.enabled = False
elif self.settings.successfully_converted is None:
# must have just switched to this view
msg = _("This document is not yet converted to document "
"viewer. Please click the `Document Viewer Convert` "
"button in the actions menu to convert.")
self.enabled = False
else:
self.enabled = False
msg = _("The file is not a supported document type. "
"Your type may be supported. Check out the document "
"viewer configuration settings.")
mtool = getToolByName(self.context, 'portal_membership')
self.can_modify = mtool.checkPermission('Modify portal content',
self.context)
if msg and self.can_modify:
utils.addPortalMessage(_(msg))
return self.index()
def __call__(self):
add_resource_on_request(self.request, "static.js.rec")
request = self.request
if "usn_update" in request.form:
# need to know if the site has free kits, requires siteID, and to
# get free_kits_left need to pass billing status to make sample
# def, default will be billable_code will be "Billable" with no
# billable_code_designation need to alert user if the kit site is
# a sales person so the value can be updated, sales person needs
# to add the kits to the site for this to work
authenticator = request.form.get('_authenticator')
plone.protect.CheckAuthenticator(authenticator)
# define request.form.get's
usn = request.form.get('usn')
site_id = request.form.get('site_id')
# Do things
usn_check = self.check_unique_sample_id(usn)
site_name = self.site_lookup(site_id)
check_if_site_is_sales_rep = self.check_if_site_is_sales_rep(
site_id)
docs_at_barcode_site = self.providers_at_site(site_id)
if check_if_site_is_sales_rep is True:
return json.dumps(
{"site_name": site_name,
"docs_at_barcode_site": docs_at_barcode_site,
"sales_rep_kit": check_if_site_is_sales_rep})
elif usn_check != "non unique usn":
return json.dumps(
{"site_name": site_name,
"docs_at_barcode_site": docs_at_barcode_site})
if "check_name_and_dob" in request.form:
authenticator = request.form.get('_authenticator')
plone.protect.CheckAuthenticator(authenticator)
# define request.form.get's
pt_UID = "new_patient"
dob_string = request.form.get('dob') # string value '%Y-%m-%d'
patient_first_name = request.form.get('patient_first_name')
patient_last_name = request.form.get('patient_last_name')
pt_UID = self.repeat_order_check(dob_string, patient_first_name,
patient_last_name, pt_UID)
if pt_UID != "new_patient":
previous_data = self.pull_previous_patient_data(pt_UID)
return json.dumps({"repeat order": "true",
"Pt Data from LIMS": previous_data})
else:
return json.dumps({"repeat order": "false"})
# Do things
# orders can be repeat with only first name or medical
# record number and dob! Think of it as a de-identified sample
if "all_data" in request.form:
authenticator = request.form.get('_authenticator')
plone.protect.CheckAuthenticator(authenticator)
# Patient Data Elemetns
usn_from_form = request.form.get('usn_from_from')
site_id = request.form.get('site_id')
dob = request.form.get('dob')
first = request.form.get('patient_first_name')
last = request.form.get('patient_last_name')
mrn = request.form.get('mrn')
ssn = request.form.get('ssn')
gender = request.form.get('gender')
marital_status = request.form.get('marital_status')
ethnicity = request.form.get('ethnicity')
ethnicity_other = request.form.get('ethnicity_specify')
patient_address = request.form.get('p_add_street')
patient_city = request.form.get('p_add_city')
patient_state = request.form.get('p_state')
patient_zip_code = request.form.get('p_add_zip')
patient_phone = request.form.get('patient_phone')
# Clinical Sample Data
consent_acquired = request.form.get('consent_acquired')
consent_signed = request.form.get('consent_signed')
consent_date = request.form.get('consent_date')
ana_testing = request.form.get('ana_testing')
clinical_impression = request.form.get('clinical_impression')
test_xray = request.form.get('test_xray')
raw_test_other = request.form.get('test_other')
test_other = []
test_other.append(raw_test_other)
test_other_specify = request.form.get('test_other_specify')
clin_rash = request.form.get('clin_rash')
clin_seiz_psych = request.form.get('clin_seiz_psych')
clin_mouth_sores = request.form.get('clin_mouth_sores')
clin_hair_loss = request.form.get('clin_hair_loss')
clin_joint_pain = request.form.get('clin_joint_pain')
clin_inflam = request.form.get('clin_inflam')
clin_other = request.form.get('clin_other')
clin_other_specify = request.form.get('clin_other_specify')
diag_D89_89 = request.form.get('diag_D89_89')
diag_M32_10 = request.form.get('diag_M32_10')
diag_D89_9 = request.form.get('diag_D89_9')
diag_M35_9 = request.form.get('diag_M35_9')
diag_L93_2 = request.form.get('diag_L93_2')
diag_other = request.form.get('diag_other')
diag_other_specify = request.form.get('diag_other_specify')
provider_nip_clean = request.form.get('provider_nip_clean')
provider_signed = request.form.get('provider_signed')
draw_location = request.form.get('draw_location')
draw_tel = request.form.get('draw_tel')
phlebotomist_name = request.form.get('phlebotomist_name')
draw_signed = request.form.get('draw_signed')
collection_date = request.form.get('collection_date')
shipment_date = request.form.get('shipment_date')
ordering_provider_name = request.form.get('ordering_provider_name')
billable_primary = request.form.get('billing_primary')
billable_secondary = request.form.get('billing_secondary')
assay_selection_raw = request.form.get('assay_choice[]')
other_clinical_symptoms = request.form.get('clin_other_specify')
other_inflam = request.form.get('clin_inflam_specify')
other_joint_pain = request.form.get('clin_joint_pain_specify')
# case for single assay selected
assay_selection = []
if isinstance(assay_selection_raw, basestring):
assay_selection.insert(0, assay_selection_raw)
# case for multiple assay choices selected
if isinstance(assay_selection_raw, list):
for i in assay_selection_raw:
assay_selection.append(i)
pt_UID = "new_patient"
# See if we have an existing pt
missing_date_feedback = json.dumps(
{"feedback": "Missing Key Data Elements"})
# protection for making samples and new patient records, usn must
# be unique, first name not null, dob not null, collection date
# not null
if usn_from_form == 'undefined-undefined':
return missing_date_feedback
elif first == '':
return missing_date_feedback
elif dob == '':
return missing_date_feedback
elif collection_date == '':
return missing_date_feedback
else:
pt_UID = self.repeat_order_check(dob, first, last, pt_UID)
if pt_UID != "new_patient":
msg = "PT UID: %s, Form USN: %s" % (pt_UID, usn_from_form)
logger.info(msg)
# update existing record
self.update_existing_patient_data(
pt_UID, dob, first, last, mrn, ssn, gender,
marital_status, ethnicity, ethnicity_other,
patient_address, patient_city, patient_state,
patient_zip_code, patient_phone)
self.append_usn(usn_from_form, pt_UID)
else:
print "Make a new patient record"
self.make_patient(
first, last, ssn, mrn, dob, gender, ethnicity,
ethnicity_other, marital_status, patient_address,
patient_city, patient_state, patient_zip_code,
patient_phone, usn_from_form)
sample_UID = self.make_clinical_sample(
usn_from_form, consent_acquired, ana_testing, clin_rash,
clin_seiz_psych, clin_mouth_sores, clin_hair_loss,
clin_joint_pain, clin_inflam, clin_other,
clin_other_specify, diag_D89_89, diag_M32_10, diag_D89_9,
diag_M35_9, diag_L93_2, diag_other, diag_other_specify,
provider_nip_clean, provider_signed, draw_location,
draw_tel, phlebotomist_name, draw_signed, collection_date,
shipment_date, test_other_specify, clinical_impression,
ordering_provider_name, site_id, assay_selection,
other_clinical_symptoms, other_inflam, other_joint_pain)
# make bulk aliquots
# fancy way to have multiple tubes in the system, update letter
# list as more tubes are added easy way
draw_tubes = ['A', 'B']
bulk_aliquotA = self.make_bulk_aliquots(
sample_UID, usn_from_form, draw_tubes[0])
bulk_aliquotB = self.make_bulk_aliquots(
sample_UID, usn_from_form, draw_tubes[1])
# make working aliquots
working_tubes = ['02', '03', '04']
working_aliquotA02 = self.make_working_aliquots(
usn_from_form, bulk_aliquotA, working_tubes[0])
working_aliquotA03 = self.make_working_aliquots(
usn_from_form, bulk_aliquotA, working_tubes[1])
working_aliquotA04 = self.make_working_aliquots(
usn_from_form, bulk_aliquotA, working_tubes[2])
# make assay request(s)
# make billing request(s)
# for t in tubes:
# exec ("bulk_aliquot" %t) = self.make_bulk_aliquots(
# sample_UID, usn_from_form, t)
# print"bulk_aliquot" % (t)
# make working aliquots
try:
self.update_kit_count(site_id)
except:
print "Kit Count for Site " + site_id + " Failed to Update"
# add aliquots to box for storage!
# file bulk aliquots (update aliquot to have value)
# file working aliquots (update aliquots to have value)
return json.dumps({"feedback": "Successful Sample"})
return self.template()
def test_request_resources_not_add_same_twice(self):
req = self.layer['request']
add_resource_on_request(req, 'foo')
add_resource_on_request(req, 'foo')
self.assertEqual(len(req.enabled_resources), 1)
def render(self):
# add the registered resource
add_resource_on_request(self.request, 'exercise6')
return super(MinSizeImageWidget, self).render()
def __call__(self):
add_resource_on_request(self.request, 'upload-bootstrap')
add_bundle_on_request(self.request, 'jqueryui')
add_resource_on_request(self.request, 'jquery-fileupload')
return super(ChunkedFileView, self).__call__(self)
def resources_include():
request = getRequest()
for resource in RESOURCES:
add_resource_on_request(request, resource)
def __call__(self):
# load JS resources
add_resource_on_request(self.request, 'unikold.timeslots')
return super(UTSignupSheetView, self).__call__()
def __call__(self):
add_resource_on_request(self.request, 'ploneorg-addonlisting')
return super(AddOnFolderView, self).__call__()
def __call__(self):
add_resource_on_request(self.request, 'bluechurch_profile_features')
return super(BluechurchmembraneprofileView, self).__call__()
def __call__(self, *args, **kw):
add_resource_on_request(self.request, 'untitled-js')
super(ParticipantAddForm, self).__call__(*args, **kw)
def __call__(self):
if IS_PLONE_5:
add_resource_on_request(self.request, 'iframeResizer')
return super(IssueView, self).__call__()
def __call__(self):
add_resource_on_request(self.request, "relatedmedia")
return super(RelatedMediaRenderWidget, self).__call__()
def __init__(self,context, request):
# Each view instance receives context and request as construction parameters
self.context = context
self.request = request
add_resource_on_request(self.request, 'jquery-lightbox')
def __call__(self):
self._update()
add_resource_on_request(self.request, 'documentviewer')
self.site = api.portal.get()
self.settings = Settings(self.context)
self.global_settings = GlobalSettings(self.site)
self.portal_url = getMultiAdapter(
(self.context, self.request),
name="plone_portal_state").portal_url()
self.dvstatic = "%s/++resource++dv.resources" % (self.portal_url)
resource_url = self.global_settings.override_base_resource_url
rel_url = storage.getResourceRelURL(gsettings=self.global_settings,
settings=self.settings)
if resource_url:
self.dvpdffiles = '%s/%s' % (resource_url.rstrip('/'), rel_url)
else:
self.dvpdffiles = '%s/%s' % (self.portal_url, rel_url)
utils = getToolByName(self.context, 'plone_utils')
msg = None
self.enabled = True
if allowedDocumentType(self.context,
self.global_settings.auto_layout_file_types):
if not self.installed:
msg = _(
"Since you do not have docsplit installed on this "
"system, we can not render the pages of this document.")
if self.settings.converting is not None and \
self.settings.converting:
if self.settings.successfully_converted:
# there is a version that is already converted, show it.
self.enabled = True
msg = _("A new conversion to the Document Viewer "
"is currently being generated for this document.")
else:
msg = _("The document is currently being converted to the "
"Document Viewer view.")
self.enabled = False
elif self.settings.successfully_converted is not None and \
not self.settings.successfully_converted:
msg = _("There was an error trying to convert the document. "
"Maybe the document is encrypted, corrupt or "
"malformed? Check log for details.")
self.enabled = False
elif self.settings.successfully_converted is None:
# must have just switched to this view
msg = _("This document is not yet converted to document "
"viewer. Please click the `Document Viewer Convert` "
"button in the actions menu to convert.")
self.enabled = False
else:
self.enabled = False
msg = _("The file is not a supported document type. "
"Your type may be supported. Check out the document "
"viewer configuration settings.")
mtool = getToolByName(self.context, 'portal_membership')
self.can_modify = mtool.checkPermission('Modify portal content',
self.context)
if msg and self.can_modify:
utils.addPortalMessage(_(msg))
return self.index()
def __init__(self,context, request):
# Each view instance receives context and request as construction parameters
self.context = context
self.request = request
add_resource_on_request(self.request, 'xsgs-homepage')
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'datetimepicker')
return super(DateTimePickerView, self).__call__()
def render(self):
# add the registered resource
add_resource_on_request(self.request, 'exercise7')
return super(MinSizeImageWidget, self).render()
def add_resource_on_request(self, resource):
add_resource_on_request(self.request, resource)
def __init__(self, context, request):
# Each view instance receives context and request as construction parameters
self.context = context
self.request = request
add_bundle_on_request(self.request, 'workspace-legacy')
add_resource_on_request(self.request, 'iphone-style')
def __call__(self):
add_resource_on_request(self.request, "static.js.rec")
request = self.request
if "usn_update" in request.form:
# need to know if the site has free kits, requires siteID, and to
# get free_kits_left need to pass billing status to make sample
# def, default will be billable_code will be "Billable" with no
# billable_code_designation need to alert user if the kit site is
# a sales person so the value can be updated, sales person needs
# to add the kits to the site for this to work
authenticator = request.form.get('_authenticator')
plone.protect.CheckAuthenticator(authenticator)
# define request.form.get's
usn = request.form.get('usn')
site_id = request.form.get('site_id')
# Do things
usn_check = self.check_unique_sample_id(usn)
site_name = self.site_lookup(site_id)
check_if_site_is_sales_rep = self.check_if_site_is_sales_rep(
site_id)
docs_at_barcode_site = self.providers_at_site(site_id)
if check_if_site_is_sales_rep is True:
return json.dumps({
"site_name": site_name,
"docs_at_barcode_site": docs_at_barcode_site,
"sales_rep_kit": check_if_site_is_sales_rep
})
elif usn_check != "non unique usn":
return json.dumps({
"site_name": site_name,
"docs_at_barcode_site": docs_at_barcode_site
})
if "check_name_and_dob" in request.form:
authenticator = request.form.get('_authenticator')
plone.protect.CheckAuthenticator(authenticator)
# define request.form.get's
pt_UID = "new_patient"
dob_string = request.form.get('dob') # string value '%Y-%m-%d'
patient_first_name = request.form.get('patient_first_name')
patient_last_name = request.form.get('patient_last_name')
pt_UID = self.repeat_order_check(dob_string, patient_first_name,
patient_last_name, pt_UID)
if pt_UID != "new_patient":
previous_data = self.pull_previous_patient_data(pt_UID)
return json.dumps({
"repeat order": "true",
"Pt Data from LIMS": previous_data
})
else:
return json.dumps({"repeat order": "false"})
# Do things
# orders can be repeat with only first name or medical
# record number and dob! Think of it as a de-identified sample
if "all_data" in request.form:
authenticator = request.form.get('_authenticator')
plone.protect.CheckAuthenticator(authenticator)
# Patient Data Elemetns
usn_from_form = request.form.get('usn_from_from')
site_id = request.form.get('site_id')
dob = request.form.get('dob')
first = request.form.get('patient_first_name')
last = request.form.get('patient_last_name')
mrn = request.form.get('mrn')
ssn = request.form.get('ssn')
gender = request.form.get('gender')
marital_status = request.form.get('marital_status')
ethnicity = request.form.get('ethnicity')
ethnicity_other = request.form.get('ethnicity_specify')
patient_address = request.form.get('p_add_street')
patient_city = request.form.get('p_add_city')
patient_state = request.form.get('p_state')
patient_zip_code = request.form.get('p_add_zip')
patient_phone = request.form.get('patient_phone')
# Clinical Sample Data
consent_acquired = request.form.get('consent_acquired')
consent_signed = request.form.get('consent_signed')
consent_date = request.form.get('consent_date')
ana_testing = request.form.get('ana_testing')
clinical_impression = request.form.get('clinical_impression')
test_xray = request.form.get('test_xray')
raw_test_other = request.form.get('test_other')
test_other = []
test_other.append(raw_test_other)
test_other_specify = request.form.get('test_other_specify')
clin_rash = request.form.get('clin_rash')
clin_seiz_psych = request.form.get('clin_seiz_psych')
clin_mouth_sores = request.form.get('clin_mouth_sores')
clin_hair_loss = request.form.get('clin_hair_loss')
clin_joint_pain = request.form.get('clin_joint_pain')
clin_inflam = request.form.get('clin_inflam')
clin_other = request.form.get('clin_other')
clin_other_specify = request.form.get('clin_other_specify')
diag_D89_89 = request.form.get('diag_D89_89')
diag_M32_10 = request.form.get('diag_M32_10')
diag_D89_9 = request.form.get('diag_D89_9')
diag_M35_9 = request.form.get('diag_M35_9')
diag_L93_2 = request.form.get('diag_L93_2')
diag_other = request.form.get('diag_other')
diag_other_specify = request.form.get('diag_other_specify')
provider_nip_clean = request.form.get('provider_nip_clean')
provider_signed = request.form.get('provider_signed')
draw_location = request.form.get('draw_location')
draw_tel = request.form.get('draw_tel')
phlebotomist_name = request.form.get('phlebotomist_name')
draw_signed = request.form.get('draw_signed')
collection_date = request.form.get('collection_date')
shipment_date = request.form.get('shipment_date')
ordering_provider_name = request.form.get('ordering_provider_name')
billable_primary = request.form.get('billing_primary')
billable_secondary = request.form.get('billing_secondary')
assay_selection_raw = request.form.get('assay_choice[]')
other_clinical_symptoms = request.form.get('clin_other_specify')
other_inflam = request.form.get('clin_inflam_specify')
other_joint_pain = request.form.get('clin_joint_pain_specify')
# case for single assay selected
assay_selection = []
if isinstance(assay_selection_raw, basestring):
assay_selection.insert(0, assay_selection_raw)
# case for multiple assay choices selected
if isinstance(assay_selection_raw, list):
for i in assay_selection_raw:
assay_selection.append(i)
pt_UID = "new_patient"
# See if we have an existing pt
missing_date_feedback = json.dumps(
{"feedback": "Missing Key Data Elements"})
# protection for making samples and new patient records, usn must
# be unique, first name not null, dob not null, collection date
# not null
if usn_from_form == 'undefined-undefined':
return missing_date_feedback
elif first == '':
return missing_date_feedback
elif dob == '':
return missing_date_feedback
elif collection_date == '':
return missing_date_feedback
else:
pt_UID = self.repeat_order_check(dob, first, last, pt_UID)
if pt_UID != "new_patient":
msg = "PT UID: %s, Form USN: %s" % (pt_UID, usn_from_form)
logger.info(msg)
# update existing record
self.update_existing_patient_data(
pt_UID, dob, first, last, mrn, ssn, gender,
marital_status, ethnicity, ethnicity_other,
patient_address, patient_city, patient_state,
patient_zip_code, patient_phone)
self.append_usn(usn_from_form, pt_UID)
else:
print "Make a new patient record"
self.make_patient(first, last, ssn, mrn, dob, gender,
ethnicity, ethnicity_other,
marital_status, patient_address,
patient_city, patient_state,
patient_zip_code, patient_phone,
usn_from_form)
sample_UID = self.make_clinical_sample(
usn_from_form, consent_acquired, ana_testing, clin_rash,
clin_seiz_psych, clin_mouth_sores, clin_hair_loss,
clin_joint_pain, clin_inflam, clin_other,
clin_other_specify, diag_D89_89, diag_M32_10, diag_D89_9,
diag_M35_9, diag_L93_2, diag_other, diag_other_specify,
provider_nip_clean, provider_signed, draw_location,
draw_tel, phlebotomist_name, draw_signed, collection_date,
shipment_date, test_other_specify, clinical_impression,
ordering_provider_name, site_id, assay_selection,
other_clinical_symptoms, other_inflam, other_joint_pain)
# make bulk aliquots
# fancy way to have multiple tubes in the system, update letter
# list as more tubes are added easy way
draw_tubes = ['A', 'B']
bulk_aliquotA = self.make_bulk_aliquots(
sample_UID, usn_from_form, draw_tubes[0])
bulk_aliquotB = self.make_bulk_aliquots(
sample_UID, usn_from_form, draw_tubes[1])
# make working aliquots
working_tubes = ['02', '03', '04']
working_aliquotA02 = self.make_working_aliquots(
usn_from_form, bulk_aliquotA, working_tubes[0])
working_aliquotA03 = self.make_working_aliquots(
usn_from_form, bulk_aliquotA, working_tubes[1])
working_aliquotA04 = self.make_working_aliquots(
usn_from_form, bulk_aliquotA, working_tubes[2])
# make assay request(s)
# make billing request(s)
# for t in tubes:
# exec ("bulk_aliquot" %t) = self.make_bulk_aliquots(
# sample_UID, usn_from_form, t)
# print"bulk_aliquot" % (t)
# make working aliquots
try:
self.update_kit_count(site_id)
except:
print "Kit Count for Site " + site_id + " Failed to Update"
# add aliquots to box for storage!
# file bulk aliquots (update aliquot to have value)
# file working aliquots (update aliquots to have value)
return json.dumps({"feedback": "Successful Sample"})
return self.template()
def __init__(self, context, request):
super(Pantry, self).__init__(context, request)
add_resource_on_request(self.request, 'prismjs')
add_resource_on_request(self.request, 'mockup-patterns-toggle')
def test_request_resources_not_add_same_twice(self):
req = self.layer['request']
add_resource_on_request(req, 'foo')
add_resource_on_request(req, 'foo')
self.assertEqual(len(req.enabled_resources), 1)
def __call__(self):
add_resource_on_request(self.request, "iframeResizer")
return self.index()
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'exercise2')
return super(Exercise2View, self).__call__()
def __call__(self):
# utility function to add resource to rendered page
add_resource_on_request(self.request, 'castle-components-history')
return super(HistoryView, self).__call__()
def setup(self):
if PLONE_5:
from Products.CMFPlone.resources import add_resource_on_request
add_resource_on_request(self.request, 'psplonerealestatefont')
