class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, Qt.WindowFlags(fl), "Standart") if not name: self.setObjectName("create_discrete_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget( self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget( self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0, 0, 0, 0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) self._acq_widget.acq_widget_layout.set_max_osc_range_button.clicked.\ connect(self.set_max_osc_total_range_clicked) # Other --------------------------------------------------------------- #self._processing_widget.processing_widget.\ # run_processing_parallel_cbox.hide() def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters( ) if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_acquisition_values") def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() self._acq_widget.use_kappa(False) if not dc.is_helical(): if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[ 0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) #self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[ 0].acquisition_parameters self._acq_widget.update_data_model( self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) try: #This is very EMBL specific and soon will be removed if self._beamline_setup_hwobj.detector_hwobj.get_roi_mode_name( ) == "16M": file_size = 18. total_num_of_images = 14400 else: file_size = 18. / 4 total_num_of_images = 14400 * 4 num_images = float( self._acq_widget.acq_widget_layout.num_images_ledit.text()) total, free, perc = self._beamline_setup_hwobj.machine_info_hwobj.get_ramdisk_size( ) free_mb = free / (2**20) if num_images > total_num_of_images * free_mb / (125.8 * 1024): msg = "Ramdisk size (%d GB) is not enough to run the collection with " % ( free_mb / 1024) msg += "%d frames." % num_images logging.getLogger("GUI").error(msg) result = False except: pass return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot else: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot( ) tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number=None, start_image=None, num_images=None, osc_start=None, sc=None, cpos=None, inverse_beam=False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked() and \ acq.acquisition_parameters.num_images > 19 tasks.append(dc) return tasks def execute_task(self, sample): #All this should be in queue_entry level group_data = { 'sessionId': self._session_hwobj.session_id, 'experimentType': 'OSC' } gid = self._beamline_setup_hwobj.lims_client_hwobj.\ _store_data_collection_group(group_data) sample.lims_group_id = gid task_list = self._create_task(sample, None) task_list[0].lims_group_id = gid param_list = queue_model_objects.to_collect_dict(task_list[0], \ self._session_hwobj, sample, None) self._beamline_setup_hwobj.collect_hwobj.collect(\ queue_model_enumerables.COLLECTION_ORIGIN_STR.MXCUBE, param_list) def set_max_osc_total_range_clicked(self): num_images = int( self._acq_widget.acq_widget_layout.num_images_ledit.text()) (lower, upper), exp_time = self._acq_widget.update_osc_total_range_limits() self._acq_widget.acq_widget_layout.osc_start_ledit.setText(\ "%.2f" % lower) self._acq_widget.acq_widget_layout.osc_total_range_ledit.setText(\ "%.2f" % abs(upper - lower)) self._acq_widget.acq_widget_layout.num_images_ledit.setText(\ "%d" % (abs(upper - lower) / float(self._acq_widget.acq_widget_layout.osc_range_ledit.text())))
class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, QtCore.Qt.WindowFlags(fl), "Standart") if not name: self.setObjectName("create_discrete_widget") self.init_models() # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.previous_energy = None self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget(self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0,0,0,0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.acq_parameters_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- self._processing_widget.processing_widget.\ run_processing_parallel_cbox.hide() def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() if not dc.is_helical(): if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) #self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[0].acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot else: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number = None, start_image = None, num_images = None, osc_start = None, sc = None, cpos=None, inverse_beam = False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = False tasks.append(dc) return tasks def execute_task(self, sample): #All this should be in queue_entry level group_data = {'sessionId': self._session_hwobj.session_id, 'experimentType': 'OSC'} gid = self._beamline_setup_hwobj.lims_client_hwobj.\ _store_data_collection_group(group_data) sample.lims_group_id = gid task_list = self._create_task(sample, None) task_list[0].lims_group_id = gid param_list = queue_model_objects.to_collect_dict(task_list[0], \ self._session_hwobj, sample, None) self._beamline_setup_hwobj.collect_hwobj.collect(\ queue_model_enumerables.COLLECTION_ORIGIN_STR.MXCUBE, param_list)
class CreateEnergyScanWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Energy scan') if not name: self.setObjectName("create_energy_scan_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._periodic_table_widget = PeriodicTableWidget(self) self._data_path_widget = DataPathWidget(self, data_model=self._path_template, layout='vertical') _parameters_gbox = QGroupBox('Parameters', self) self._adjust_transmission_cbox = QCheckBox(\ "Adjust transmission", _parameters_gbox) self._adjust_transmission_cbox.setChecked(False) self._adjust_transmission_cbox.setEnabled(True) self._max_transmission_label = QLabel("Maximum transmission:") self._max_transmission_ledit = QLineEdit("20", _parameters_gbox) self._max_transmission_ledit.setFixedWidth(80) self._max_transmission_ledit.setEnabled(False) # Layout -------------------------------------------------------------- _parameters_gbox_hlayout = QGridLayout(_parameters_gbox) _parameters_gbox_hlayout.addWidget(self._adjust_transmission_cbox, 0, 0) _parameters_gbox_hlayout.addWidget(self._max_transmission_label, 1, 0) _parameters_gbox_hlayout.addWidget(self._max_transmission_ledit, 1, 1) _parameters_gbox_hlayout.setColumnStretch(2, 1) _parameters_gbox_hlayout.setSpacing(2) _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._periodic_table_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(_parameters_gbox) _main_vlayout.setContentsMargins(2, 2, 2, 2) _main_vlayout.setSpacing(6) _main_vlayout.addStretch(10) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ #self._periodic_table_widget.elementEdgeSelectedSignal.connect(\ # self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.connect(\ self.path_template_changed) self._adjust_transmission_cbox.stateChanged.connect(\ self.adjust_transmission_state_changed) self._max_transmission_ledit.textEdited.connect(\ self.max_transmission_value_changed) def set_expert_mode(self, state): self._adjust_transmission_cbox.setEnabled(state) self._max_transmission_label.setEnabled(state) self._max_transmission_ledit.setEnabled(state) def enable_compression(self, state): CreateTaskBase.enable_compression(self, False) def set_beamline_setup(self, bl_setup_hwobj): CreateTaskBase.set_beamline_setup(self, bl_setup_hwobj) self._periodic_table_widget.set_elements(\ self._beamline_setup_hwobj.energyscan_hwobj.getElements()) self.enable_compression(False) try: max_transmission_value = self._beamline_setup_hwobj.\ energyscan_hwobj.get_max_transmission_value() self._adjust_transmission_cbox.setEnabled(True) self._adjust_transmission_cbox.setChecked(True) self._beamline_setup_hwobj.energyscan_hwobj.adjust_transmission( True) if max_transmission_value: self._max_transmission_ledit.setText("%.2f" % max_transmission_value) except: pass def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self.enery_scan = queue_model_objects.EnergyScan() self._path_template.start_num = 1 self._path_template.num_files = 1 self._path_template.suffix = 'raw' self._path_template.compression = False def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) escan_model = tree_item.get_model() if isinstance(tree_item, Qt4_queue_item.EnergyScanQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) if escan_model.get_path_template(): self._path_template = escan_model.get_path_template() self._data_path_widget.update_data_model(self._path_template) elif not(isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem)): self.setDisabled(True) def approve_creation(self): """ Descript. : """ base_result = CreateTaskBase.approve_creation(self) selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge( ) if not selected_element: logging.getLogger("GUI").\ warning("No element selected, please select an element.") return base_result and selected_element # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ data_collections = [] selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge( ) if selected_element: if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot( ) else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot path_template = self._create_path_template(sample, self._path_template) energy_scan = queue_model_objects.EnergyScan( sample, path_template, cpos) energy_scan.set_name(path_template.get_prefix()) energy_scan.set_number(path_template.run_number) energy_scan.element_symbol = selected_element energy_scan.edge = selected_edge data_collections.append(energy_scan) self._path_template.run_number += 1 else: logging.getLogger("GUI").\ info("No element selected, please select an element.") return data_collections def element_edge_selected(self, element, edge): if len(self._current_selected_items) == 1: item = self._current_selected_items[0] if isinstance(item, Qt4_queue_item.EnergyScanQueueItem): item.get_model().element_symbol = str(element) item.get_model().edge = str(edge) def adjust_transmission_state_changed(self, state): self._max_transmission_ledit.setEnabled(state) self._beamline_setup_hwobj.energyscan_hwobj.adjust_transmission(state) def max_transmission_value_changed(self, value): try: max_transmission = float(value) self._beamline_setup_hwobj.energyscan_hwobj.set_max_transmission( max_transmission) except: pass
class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, Qt.WindowFlags(fl), "Standard") if not name: self.setObjectName("create_discrete_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget(self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(6) _main_vlayout.setContentsMargins(2, 2, 2, 2) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) #self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_acquisition_values") self._processing_widget.processing_widget.run_processing_parallel_cbox.setChecked(\ self._beamline_setup_hwobj._get_run_processing_parallel()) def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() self._acq_widget.use_kappa(False) if not dc.is_helical(): if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) #self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[0].acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) try: #This is very EMBL specific and soon will be removed if self._beamline_setup_hwobj.detector_hwobj.get_roi_mode_name() == "16M": file_size = 18. total_num_of_images = 14400 else: file_size = 18. / 4 total_num_of_images = 14400 * 4 num_images = float(self._acq_widget.acq_widget_layout.num_images_ledit.text()) total, free, perc = self._beamline_setup_hwobj.machine_info_hwobj.get_ramdisk_size() free_mb = free / (2 ** 20) if num_images > total_num_of_images * free_mb / (125.8 * 1024): msg = "Ramdisk size (%d GB) is not enough to run the collection with " % (free_mb / 1024) msg += "%d frames." % num_images logging.getLogger("GUI").error(msg) result = False except: pass return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot else: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number = None, start_image = None, num_images = None, osc_start = None, sc = None, cpos=None, inverse_beam = False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() if self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked(): dc.run_processing_parallel = "Undefined" tasks.append(dc) return tasks def execute_task(self, sample): #All this should be in queue_entry level group_data = {'sessionId': self._session_hwobj.session_id, 'experimentType': 'OSC'} gid = self._beamline_setup_hwobj.lims_client_hwobj.\ _store_data_collection_group(group_data) sample.lims_group_id = gid task_list = self._create_task(sample, None) task_list[0].lims_group_id = gid param_list = queue_model_objects.to_collect_dict(task_list[0], \ self._session_hwobj, sample, None) self._beamline_setup_hwobj.collect_hwobj.collect(\ queue_model_enumerables.COLLECTION_ORIGIN_STR.MXCUBE, param_list) def set_max_osc_total_range_clicked(self): num_images = int(self._acq_widget.acq_widget_layout.num_images_ledit.text()) (lower, upper), exp_time = self._acq_widget.update_osc_total_range_limits() self._acq_widget.acq_widget_layout.osc_start_ledit.setText(\ "%.3f" % (lower + 0.001)) self._acq_widget.acq_widget_layout.osc_total_range_ledit.setText(\ "%.3f" % abs(upper - lower)) self._acq_widget.acq_widget_layout.num_images_ledit.setText(\ "%d" % (abs(upper - lower) / float(self._acq_widget.acq_widget_layout.osc_range_ledit.text())))
class CreateHelicalWidget(CreateTaskBase): def __init__(self, parent = None,name = None, fl = 0): CreateTaskBase.__init__(self, parent, name, fl, 'Helical') if not name: self.setObjectName("create_helical_widget") self.init_models() # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._lines_map = {} # Graphic elements ---------------------------------------------------- self._lines_widget = uic.loadUi(os.path.join(\ os.path.dirname(__file__), "ui_files/Qt4_helical_line_widget_layout.ui")) self._acq_widget = AcquisitionWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget(self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._lines_widget) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0, 0, 0, 0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._lines_widget.lines_treewidget.itemSelectionChanged.connect(\ self.lines_treewidget_selection_changed) self._lines_widget.create_line_button.clicked.connect(\ self.create_line_button_clicked) self._lines_widget.remove_line_button.clicked.connect(\ self.remove_line_button_clicked) self._lines_widget.overlay_cbox.stateChanged.connect(\ self.overlay_toggled) self._lines_widget.overlay_slider.valueChanged.connect(\ self.overlay_alpha_changed) self._lines_widget.swap_points_button.clicked.connect(\ self.swap_points_clicked) self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.acq_parameters_changed) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- for col in range(self._lines_widget.lines_treewidget.columnCount()): self._lines_widget.lines_treewidget.resizeColumnToContents(col) #self._processing_widget.processing_widget.\ # run_processing_parallel_cbox.setChecked(False) def init_models(self): CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_helical_values") def set_beamline_setup(self, bl_setup_hwobj): CreateTaskBase.set_beamline_setup(self, bl_setup_hwobj) # At startup, if scene loaded from file, then update listwidget shapes = self._graphics_manager_hwobj.get_shapes() for shape in shapes: if isinstance(shape, GraphicsItemLine): self.shape_created(shape, "Line") def shape_created(self, shape, shape_type): if shape_type == "Line": self._lines_widget.lines_treewidget.clearSelection() info_str_list = QtCore.QStringList() info_str_list.append(shape.get_display_name()) info_str_list.append("%d" % shape.get_points_index()[0]) info_str_list.append("%d" % shape.get_points_index()[1]) lines_treewidget_item = QtGui.QTreeWidgetItem(\ self._lines_widget.lines_treewidget, info_str_list) lines_treewidget_item.setSelected(True) self._lines_map[shape] = lines_treewidget_item self.lines_treewidget_selection_changed() def shape_deleted(self, shape, shape_type): if shape_type == "Line" and self._lines_map.get(shape): shape_index = self._lines_widget.lines_treewidget.\ indexFromItem(self._lines_map[shape]) self._lines_widget.lines_treewidget.\ takeTopLevelItem(shape_index.row()) self._lines_map.pop(shape) def shape_changed(self, shape, shape_type): lines_treewidget_item = self._lines_map.get(shape) if lines_treewidget_item: lines_treewidget_item.setText(1, "%d" % shape.get_points_index()[0]) lines_treewidget_item.setText(2, "%d" % shape.get_points_index()[1]) def approve_creation(self): base_result = CreateTaskBase.approve_creation(self) if len(self._lines_widget.lines_treewidget.selectedItems()) == 0: logging.getLogger("GUI").\ warning("No lines selected, please select one or more lines.") return False else: return base_result def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def select_shape_with_cpos(self, start_cpos, end_cpos, num_images): selected_line = None self._lines_widget.overlay_slider.setEnabled(False) self._lines_widget.overlay_cbox.setEnabled(False) self._graphics_manager_hwobj.de_select_all() for shape in self._graphics_manager_hwobj.get_shapes(): if isinstance(shape, GraphicsItemLine): (start_cpos_index, end_cpos_index) = shape.get_points_index() if start_cpos_index == start_cpos.index and \ end_cpos_index == end_cpos.index: self._graphics_manager_hwobj.select_shape(shape) shape.set_num_images(num_images) selected_line = shape self._lines_widget.overlay_slider.setEnabled(True) self._lines_widget.overlay_cbox.setEnabled(True) #de-select previous selected list items and #select the current shape (Line). """ for (list_item, shape) in self._lines_map.iteritems(): if selected_line == shape: list_item.setSelected(True) else: list_item.setSelected(False) """ def single_item_selection(self, tree_item): CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() self._processing_parameters = sample_model.processing_parameters #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): data_collection = tree_item.get_model() if data_collection.is_helical(): self.setDisabled(tree_item.get_model().is_executed()) self._path_template = data_collection.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters if len(data_collection.acquisitions) == 2: start_cpos = data_collection.acquisitions[0].acquisition_parameters.\ centred_position end_cpos = data_collection.acquisitions[1].acquisition_parameters.\ centred_position num_images = data_collection.acquisitions[0].acquisition_parameters.\ num_images self.select_shape_with_cpos(start_cpos, end_cpos, num_images) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) self._processing_parameters = data_collection.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): self._processing_widget.update_data_model(self._processing_parameters) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) def _create_task(self, sample, shape): data_collections = [] for shape in self.get_selected_lines(): snapshot = self._graphics_manager_hwobj.get_scene_snapshot(shape) # Acquisition for start position start_acq = self._create_acq(sample) start_graphical_point, end_graphical_point = \ shape.get_graphical_points() start_acq.acquisition_parameters.\ centred_position = copy.deepcopy(start_graphical_point.get_centred_position()) start_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot start_acq.path_template.suffix = self._session_hwobj.suffix # Add another acquisition for the end position end_acq = self._create_acq(sample) end_acq.acquisition_parameters.\ centred_position = copy.deepcopy(end_graphical_point.get_centred_position()) end_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot end_acq.path_template.suffix = self._session_hwobj.suffix processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([start_acq, end_acq], sample.crystals[0], processing_parameters) dc.set_name(start_acq.path_template.get_prefix()) dc.set_number(start_acq.path_template.run_number) dc.set_experiment_type(EXPERIMENT_TYPE.HELICAL) dc.set_requires_centring(False) dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked() data_collections.append(dc) self._path_template.run_number += 1 return data_collections def lines_treewidget_selection_changed(self): self._lines_widget.remove_line_button.setEnabled(False) for shape, list_item in self._lines_map.iteritems(): self._graphics_manager_hwobj.select_shape(shape, list_item.isSelected()) self._lines_widget.remove_line_button.setEnabled(True) self._lines_widget.swap_points_button.setEnabled(True) #shape.setSelected(list_item.isSelected()) def create_line_button_clicked(self): self._graphics_manager_hwobj.create_line() def remove_line_button_clicked(self): line_to_delete = None for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line_to_delete = line break if line_to_delete: self._graphics_manager_hwobj.delete_shape(line_to_delete) def get_selected_lines(self): selected_lines = [] for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): selected_lines.append(line) return selected_lines def overlay_toggled(self, state): self._graphics_manager_hwobj.set_display_overlay(state) def overlay_alpha_changed(self, alpha_value): for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line.set_fill_alpha(alpha_value) def swap_points_clicked(self): for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): self._graphics_manager_hwobj.swap_line_points(line)
class CreateCharWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation') if not name: self.setName("create_char_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._current_selected_item = None self.init_models() self._char_params_mib = DataModelInputBinder(self._char_params) # Graphic elements ---------------------------------------------------- self._acq_widget = \ AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters, path_template = self._path_template) self._data_path_gbox = QtGui.QGroupBox('Data location', self) self._data_path_widget = DataPathWidget(self._data_path_gbox, data_model=self._path_template, layout='vertical') self._vertical_dimension_widget = uic.loadUi( os.path.join( os.path.dirname(__file__), 'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui')) self._char_widget = uic.loadUi( os.path.join( os.path.dirname(__file__), 'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui')) gbox = self._char_widget.findChild(QtGui.QGroupBox, "characterisation_gbox") p = gbox.palette() p.setColor(QtGui.QPalette.Window, QtCore.Qt.red) p.setColor(QtGui.QPalette.Highlight, QtCore.Qt.red) gbox.setPalette(p) # Layout -------------------------------------------------------------- _data_path_gbox_layout = QtGui.QVBoxLayout(self) _data_path_gbox_layout.addWidget(self._data_path_widget) _data_path_gbox_layout.setSpacing(0) _data_path_gbox_layout.setContentsMargins(0, 0, 0, 0) self._data_path_gbox.setLayout(_data_path_gbox_layout) _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_gbox) _main_vlayout.addWidget(self._char_widget) _main_vlayout.addWidget(self._vertical_dimension_widget) _main_vlayout.setSpacing(0) _main_vlayout.setContentsMargins(0, 0, 0, 0) self.setLayout(_main_vlayout) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ # Other --------------------------------------------------------------- self._char_params_mib.bind_value_update( 'opt_sad', self._char_widget.optimised_sad_cbx, bool, None) self._char_params_mib.bind_value_update( 'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool, None) #self._char_params_mib.bind_value_update('determine_rad_params', # induced_burn_cbx, # bool, None) self._char_params_mib.bind_value_update( 'strategy_complexity', self._char_widget.start_comp_cbox, int, None) self._char_params_mib.\ bind_value_update('max_crystal_vdim', self._vertical_dimension_widget.max_vdim_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vdim', self._vertical_dimension_widget.min_vdim_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vphi', self._vertical_dimension_widget.min_vphi_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('max_crystal_vphi', self._vertical_dimension_widget.max_vphi_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._vertical_dimension_widget.space_group_ledit.addItems( XTAL_SPACEGROUPS) self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) self._vertical_dimension_widget.space_group_ledit.activated.\ connect(self._space_group_change) self.connect(self._data_path_widget, QtCore.SIGNAL("pathTemplateChanged"), self.handle_path_conflict) #self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"), # self.use_induced_burn) def use_induced_burn(self, state): """ Descript. : """ self._acquisition_parameters.induce_burn = state def _space_group_change(self, index): """ Descript. : """ self._char_params.space_group = queue_model_enumerables.\ XTAL_SPACEGROUPS[index] def _set_space_group(self, space_group): """ Descript. : """ index = 0 if space_group in XTAL_SPACEGROUPS: index = XTAL_SPACEGROUPS.index(space_group) self._space_group_change(index) self._vertical_dimension_widget.space_group_ledit.setCurrentIndex( index) def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._init_models() def _init_models(self): """ Descript. : """ self._char = queue_model_objects.Characterisation() self._char_params = self._char.characterisation_parameters self._processing_parameters = queue_model_objects.ProcessingParameters( ) if self._beamline_setup_hwobj is not None: self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_char_acq_parameters() self._char_params = self._beamline_setup_hwobj.\ get_default_characterisation_parameters() try: transmission = self._beamline_setup_hwobj.transmission_hwobj.getAttFactor( ) transmission = round(float(transmission), 1) except AttributeError: transmission = 0 try: resolution = self._beamline_setup_hwobj.resolution_hwobj.getPosition( ) resolution = round(float(resolution), 3) except AttributeError: resolution = 0 try: energy = self._beamline_setup_hwobj.energy_hwobj.getCurrentEnergy( ) energy = round(float(energy), 4) except AttributeError: energy = 0 self._acquisition_parameters.resolution = resolution self._acquisition_parameters.energy = energy self._acquisition_parameters.transmission = transmission else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters( ) return self._path_template.reference_image_prefix = 'ref' # The num images drop down default value is 1 # we would like it to be 2 self._acquisition_parameters.num_images = 2 self._char.characterisation_software =\ queue_model_enumerables.COLLECTION_ORIGIN.EDNA self._path_template.num_files = 2 self._acquisition_parameters.shutterless = False def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): self._init_models() self._set_space_group(self._char_params.space_group) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self._char_params_mib.set_model(self._char_params) #self._char_params = copy.deepcopy(self._char_params) #self._acquisition_parameters = copy.deepcopy(self._acquisition_parameters) elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) self._char = tree_item.get_model() if self._char.get_path_template(): self._path_template = self._char.get_path_template() self._data_path_widget.update_data_model(self._path_template) data_collection = self._char.reference_image_collection self._char_params = self._char.characterisation_parameters self._char_params_mib.set_model(self._char_params) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) if len(data_collection.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = data_collection.processing_parameters else: self.setDisabled(True) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._char_params.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) selected_shapes = self._graphics_manager_hwobj.get_selected_shapes() for shape in selected_shapes: if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint): result = True return result # Called by the owning widget (task_toolbox_widget) to create # a collection. when a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_snapshot() else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_snapshot([shape]) cpos = copy.deepcopy(shape.get_centred_positions()[0]) cpos.snapshot_image = snapshot char_params = copy.deepcopy(self._char_params) acq = self._create_acq(sample) dc = queue_model_objects.\ DataCollection([acq], sample.crystals[0], self._processing_parameters) # Reference images for characterisations should be taken 90 deg apart # this is achived by setting overap to -89 acq.acquisition_parameters.overlap = -89 acq.acquisition_parameters.centred_position = cpos dc.acquisitions[0] = acq dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF char = queue_model_objects.Characterisation(dc, char_params) char.set_name(dc.acquisitions[0].\ path_template.get_prefix()) char.set_number(dc.acquisitions[0].\ path_template.run_number) tasks.append(char) self._path_template.run_number += 1 return tasks
class CreateEnergyScanWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Energy scan') if not name: self.setObjectName("create_energy_scan_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._periodic_table_widget = PeriodicTableWidget(self) self._data_path_widget = DataPathWidget(self, data_model=self._path_template, layout='vertical') # Layout -------------------------------------------------------------- self.main_layout = QtGui.QVBoxLayout(self) self.main_layout.addWidget(self._periodic_table_widget) self.main_layout.addWidget(self._data_path_widget) self.main_layout.setContentsMargins(0, 0, 0, 0) self.main_layout.setSpacing(6) self.main_layout.addStretch(10) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._periodic_table_widget.elementEdgeSelectedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.acq_parameters_changed) def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self.enery_scan = queue_model_objects.EnergyScan() self._path_template.start_num = 1 self._path_template.num_files = 1 self._path_template.suffix = 'raw' def set_energy_scan_hwobj(self, energy_scan_hwobj): """ Descript. : """ self._periodic_table_widget.set_elements(\ energy_scan_hwobj.getElements()) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) escan_model = tree_item.get_model() if isinstance(tree_item, Qt4_queue_item.EnergyScanQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) if escan_model.get_path_template(): self._path_template = escan_model.get_path_template() self._data_path_widget.update_data_model(self._path_template) elif not(isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem)): self.setDisabled(True) def approve_creation(self): """ Descript. : """ base_result = CreateTaskBase.approve_creation(self) selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge( ) if not selected_element: logging.getLogger("GUI").\ info("No element selected, please select an element.") return base_result and selected_element # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ data_collections = [] selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge( ) if selected_element: if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot( ) else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot path_template = self._create_path_template(sample, self._path_template) energy_scan = queue_model_objects.EnergyScan( sample, path_template, cpos) energy_scan.set_name(path_template.get_prefix()) energy_scan.set_number(path_template.run_number) energy_scan.element_symbol = selected_element energy_scan.edge = selected_edge data_collections.append(energy_scan) self._path_template.run_number += 1 else: logging.getLogger("GUI").\ info("No element selected, please select an element.") return data_collections def element_edge_selected(self, element, edge): if len(self._current_selected_items) == 1: item = self._current_selected_items[0] if isinstance(item, Qt4_queue_item.EnergyScanQueueItem): item.get_model().element_symbol = str(element) item.get_model().edge = str(edge)
class CreateCharWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation') self.setObjectName("create_char_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._vertical_dimension_widget = None self._current_selected_item = None self.init_models() self._char_params_mib = DataModelInputBinder(self._char_params) # Graphic elements ---------------------------------------------------- self._acq_widget = \ AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters, path_template = self._path_template) self._data_path_widget = DataPathWidget(self, data_model=self._path_template, layout='vertical') self._vertical_dimension_widget = loadUi( os.path.join( os.path.dirname(__file__), 'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui')) self._char_widget = loadUi( os.path.join( os.path.dirname(__file__), 'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui')) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._char_widget) _main_vlayout.addWidget(self._vertical_dimension_widget) _main_vlayout.setContentsMargins(2, 2, 2, 2) _main_vlayout.setSpacing(6) _main_vlayout.addStretch(0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._vertical_dimension_widget.space_group_ledit.activated.\ connect(self._space_group_change) #self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"), # self.use_induced_burn) self._char_widget.characterisation_gbox.toggled.connect(\ self.characterisation_gbox_toggled) self._char_widget.wait_result_cbx.toggled.connect(\ self.wait_results_cbx_toggled) self._char_widget.execute_plan_cbx.toggled.connect(\ self.run_diffraction_plan_cbx_toggled) # Other --------------------------------------------------------------- self._char_params_mib.bind_value_update( 'opt_sad', self._char_widget.optimised_sad_cbx, bool, None) self._char_params_mib.bind_value_update( 'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool, None) #self._char_params_mib.bind_value_update('determine_rad_params', # induced_burn_cbx, # bool, None) self._char_params_mib.bind_value_update( 'strategy_complexity', self._char_widget.start_comp_cbox, int, None) self._char_params_mib.\ bind_value_update('max_crystal_vdim', self._vertical_dimension_widget.max_vdim_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vdim', self._vertical_dimension_widget.min_vdim_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vphi', self._vertical_dimension_widget.min_vphi_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('max_crystal_vphi', self._vertical_dimension_widget.max_vphi_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._vertical_dimension_widget.space_group_ledit.addItems( XTAL_SPACEGROUPS) def enable_compression(self, state): CreateTaskBase.enable_compression(self, False) def use_induced_burn(self, state): """ Descript. : """ self._acquisition_parameters.induce_burn = state def _space_group_change(self, index): """ Descript. : """ self._char_params.space_group = queue_model_enumerables.\ XTAL_SPACEGROUPS[index] def _set_space_group(self, space_group): """ Descript. : """ index = 0 if self._vertical_dimension_widget: if space_group in XTAL_SPACEGROUPS: index = XTAL_SPACEGROUPS.index(space_group) self._space_group_change(index) self._vertical_dimension_widget.space_group_ledit.\ setCurrentIndex(index) def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._init_models() def _init_models(self): """ Descript. : """ self._char = queue_model_objects.Characterisation() self._char_params = self._char.characterisation_parameters self._processing_parameters = queue_model_objects.ProcessingParameters( ) self._set_space_group(self._processing_parameters.space_group) if self._beamline_setup_hwobj is not None: self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_char_acq_parameters() self._char_params = self._beamline_setup_hwobj.\ get_default_characterisation_parameters() else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters( ) self._path_template.reference_image_prefix = 'ref' # The num images drop down default value is 1 # we would like it to be 2 self._acquisition_parameters.num_images = 2 self._char.characterisation_software =\ queue_model_enumerables.COLLECTION_ORIGIN.EDNA self._path_template.num_files = 2 self._path_template.compression = False self._acquisition_parameters.shutterless = False def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): #self._init_models() if self._char_params.space_group == "": sample_model = tree_item.get_model() self._set_space_group( sample_model.processing_parameters.space_group) #self._acq_widget.update_data_model(self._acquisition_parameters, # self._path_template) #self._char_params_mib.set_model(self._char_params) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) self._char = tree_item.get_model() if self._char.get_path_template(): self._path_template = self._char.get_path_template() self._data_path_widget.update_data_model(self._path_template) data_collection = self._char.reference_image_collection self._char_params = self._char.characterisation_parameters self._char_params_mib.set_model(self._char_params) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(data_collection.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = data_collection.processing_parameters else: self.setDisabled(True) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._char_params.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) selected_shapes = self._graphics_manager_hwobj.get_selected_shapes() for shape in selected_shapes: if isinstance(shape, GraphicsItemPoint): result = True return result # Called by the owning widget (task_toolbox_widget) to create # a collection. when a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if not shape or not isinstance(shape, GraphicsItemPoint): cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot( ) else: # Shapes selected and sample is mounted, get the # centred positions for the shapes snapshot = self._graphics_manager_hwobj.\ get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot char_params = copy.deepcopy(self._char_params) acq = self._create_acq(sample) dc = queue_model_objects.\ DataCollection([acq], sample.crystals[0], self._processing_parameters) # Reference images for characterisations should be taken 90 deg apart # this is achived by setting overap to -89 acq.acquisition_parameters.overlap = -89 acq.acquisition_parameters.centred_position = cpos dc.acquisitions[0] = acq dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF dc.run_processing_parallel = False char = queue_model_objects.Characterisation(dc, char_params) char.set_name(dc.acquisitions[0].\ path_template.get_prefix()) char.set_number(dc.acquisitions[0].\ path_template.run_number) char.run_characterisation = self._char_widget.characterisation_gbox.isChecked( ) char.wait_result = self._char_widget.wait_result_cbx.isChecked() char.run_diffraction_plan = self._char_widget.execute_plan_cbx.isChecked( ) tasks.append(char) self._path_template.run_number += 1 return tasks def characterisation_gbox_toggled(self, state): if self._char: self._char.run_characterisation = state def wait_results_cbx_toggled(self, state): if self._char: self._char.wait_result = state def run_diffraction_plan_cbx_toggled(self, state): if self._char: self._char.run_diffraction_plan = state
class CreateHelicalWidget(CreateTaskBase): def __init__(self, parent = None,name = None, fl = 0): CreateTaskBase.__init__(self, parent, name, fl, 'Helical') if not name: self.setObjectName("create_helical_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() self._prev_pos = None self._current_pos = None self._list_item_map = {} self.init_models() # Graphic elements ---------------------------------------------------- self._lines_gbox = QtGui.QGroupBox('Lines', self) self._lines_list_widget = QtGui.QListWidget(self._lines_gbox) self._lines_list_widget.setFixedWidth(300) self._lines_list_widget.setFixedHeight(100) self._lines_list_widget.setToolTip(\ "Select the line(s) to perfrom helical scan on") add_button = QtGui.QPushButton("+", self._lines_gbox) add_button.setFixedWidth(20) add_button.setFixedHeight(20) remove_button = QtGui.QPushButton("-", self._lines_gbox) remove_button.setFixedWidth(20) remove_button.setFixedHeight(20) add_button_tool_tip = "Add a line between two saved positions, " \ "CTRL click to select more than one position" add_button.setToolTip(add_button_tool_tip) remove_button_tool_tip = "Remove selected line(s)" remove_button.setToolTip(remove_button_tool_tip) self._acq_gbox = QtGui.QGroupBox('Acquisition', self) self._acq_widget = AcquisitionWidget(self._acq_gbox, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_gbox = QtGui.QGroupBox('Data location', self) self._data_path_widget = \ DataPathWidget(self._data_path_gbox, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_gbox = QtGui.QGroupBox('Processing', self) self._processing_gbox.setObjectName('processing_gbox') self._processing_widget = \ ProcessingWidget(self._processing_gbox, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _lines_gbox_gridlayout = QtGui.QGridLayout(self) _lines_gbox_gridlayout.addWidget(self._lines_list_widget, 0, 0, 2, 1) _lines_gbox_gridlayout.addWidget(add_button, 0, 1) _lines_gbox_gridlayout.addWidget(remove_button, 1, 1) _lines_gbox_gridlayout.setSpacing(2) _lines_gbox_gridlayout.setColumnStretch(2, 10) _lines_gbox_gridlayout.setContentsMargins(2, 2, 2, 2) self._lines_gbox.setLayout(_lines_gbox_gridlayout) _acq_gbox_layout = QtGui.QVBoxLayout(self) _acq_gbox_layout.addWidget(self._acq_widget) _acq_gbox_layout.setSpacing(0) _acq_gbox_layout.setContentsMargins(0,0,0,0) self._acq_gbox.setLayout(_acq_gbox_layout) _data_path_gbox_layout = QtGui.QVBoxLayout(self) _data_path_gbox_layout.addWidget(self._data_path_widget) _data_path_gbox_layout.setSpacing(0) _data_path_gbox_layout.setContentsMargins(0,0,0,0) self._data_path_gbox.setLayout(_data_path_gbox_layout) _processing_gbox_layout = QtGui.QVBoxLayout(self) _processing_gbox_layout.addWidget(self._processing_widget) _processing_gbox_layout.setSpacing(0) _processing_gbox_layout.setContentsMargins(0,0,0,0) self._processing_gbox.setLayout(_processing_gbox_layout) _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._lines_gbox) _main_vlayout.addWidget(self._acq_gbox) _main_vlayout.addWidget(self._data_path_gbox) _main_vlayout.addWidget(self._processing_gbox) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0,0,0,0) self.setLayout(_main_vlayout) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ add_button.clicked.connect(self.add_clicked) remove_button.clicked.connect(self.remove_clicked) self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) QtCore.QObject.connect(self._lines_list_widget, QtCore.SIGNAL("selectionChanged()"), self.list_box_selection_changed) QtCore.QObject.connect(self._data_path_widget, QtCore.SIGNAL("pathTemplateChanged"), self.handle_path_conflict) def init_models(self): CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters() else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters() self._path_template = queue_model_objects.PathTemplate() def add_clicked(self): selected_shapes = self._graphics_manager_hwobj.get_selected_shapes() if len(selected_shapes) == 2: p1 = selected_shapes[0] p2 = selected_shapes[1] line = graphics_manager.GraphicsItemLine(p1, p2) line.show() self._graphics_manager_hwobj.add_shape(line) points_index = line.get_points_index() if points_index: display_name = "Line (points: %d, %d / kappa: %.2f phi: %.2f)" %\ (points_index[0], points_index[1], p1.centred_position.kappa, p1.centred_position.kappa_phi) else: display_name = "Line (points: #, #)" list_widget_item = QtGui.QListWidgetItem(display_name, self._lines_list_widget) self._list_item_map[list_widget_item] = line # De select previous items for item in self.selected_items(): item.setSelected(False) list_widget_item.setSelected(True) else: print "No points selected" def remove_clicked(self): selected_items = self.selected_items() if selected_items: for item in selected_items: self._lines_list_widget.takeItem(self._lines_list_widget.row(item)) line = self._list_item_map[item] self._graphics_manager_hwobj.delete_shape(line) del self._list_item_map[item] # Calback from graphics_manager, called when a shape is deleted def shape_deleted(self, shape): if isinstance(shape, graphics_manager.Point): items_to_remove = [] for (list_item, line) in self._list_item_map.iteritems(): #if shape for qub_object in shape.get_qub_objects(): if qub_object in line.get_qub_objects(): items_to_remove.append((list_item, line)) for (list_item, line) in items_to_remove: self._lines_list_widget.takeItem(self._lines_list_widget.row(list_item)) del self._list_item_map[list_item] def centred_position_selection(self, positions): if len(positions) == 1: self._prev_pos = positions[0] elif len(positions) == 2: for pos in positions: if pos != self._prev_pos: self._current_pos = pos else: self._prev_pos = None self._current_pos = None def list_box_selection_changed(self): self.show_selected_lines() def selected_items(self): selected_items = [] for item_index in range(self._lines_list_widget.count()): if self._lines_list_widget.item(item_index).isSelected(): selected_items.append(self._lines_list_widget.item(item_index)) return selected_items def show_selected_lines(self): selected_items = self.selected_items() for list_item in self._list_item_map.keys(): line = self._list_item_map[list_item] if list_item in selected_items: self._graphics_manager.select_shape(line) else: self._graphics_manager.de_select_shape(line) def approve_creation(self): base_result = CreateTaskBase.approve_creation(self) selected_lines = False if self.selected_items(): selected_lines = True else: logging.getLogger("user_level_log").\ warning("No lines selected, please select one or more lines.") return base_result and selected_lines def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def select_shape_with_cpos(self, start_cpos, end_cpos): self._graphics_manager_hwobj.de_select_all() selected_line = None for shape in self._graphics_manager_hwobj.get_shapes(): if isinstance(shape, graphics_manager.GraphicsItemLine): if shape.get_centred_positions()[0] == start_cpos and\ shape.get_centred_positions()[1] == end_cpos: self._graphics_manager_hwobj.de_select_all() shape.setSelected(True) selected_line = shape #de-select previous selected list items and #select the current shape (Line). for (list_item, shape) in self._list_item_map.iteritems(): if selected_line is shape: list_item.setSelected(True) else: list_item.setSelected(False) def single_item_selection(self, tree_item): CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() self._processing_parameters = sample_model.processing_parameters #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): data_collection = tree_item.get_model() if data_collection.experiment_type == EXPERIMENT_TYPE.HELICAL: if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) self._path_template = data_collection.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters if len(data_collection.acquisitions) == 2: start_cpos = data_collection.acquisitions[0].acquisition_parameters.\ centred_position end_cpos = data_collection.acquisitions[1].acquisition_parameters.\ centred_position self.select_shape_with_cpos(start_cpos, end_cpos) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) self._processing_parameters = data_collection.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): self._processing_widget.update_data_model(self._processing_parameters) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) def _create_task(self, sample, shape): data_collections = [] if isinstance(shape, graphics_manager.GraphicsItemLine): snapshot = self._graphics_manager_hwobj.get_snapshot(shape) # Acquisition for start position start_acq = self._create_acq(sample) start_acq.acquisition_parameters.\ centred_position = copy.deepcopy(shape.cp_start.centred_position) start_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot start_acq.path_template.suffix = self._session_hwobj.suffix # Add another acquisition for the end position end_acq = self._create_acq(sample) end_acq.acquisition_parameters.\ centred_position = shape.cp_end.centred_position end_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot end_acq.path_template.suffix = self._session_hwobj.suffix processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([start_acq, end_acq], sample.crystals[0], processing_parameters) dc.set_name(start_acq.path_template.get_prefix()) dc.set_number(start_acq.path_template.run_number) dc.experiment_type = EXPERIMENT_TYPE.HELICAL data_collections.append(dc) self._path_template.run_number += 1 return data_collections
class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, QtCore.Qt.WindowFlags(fl), "Standart") if not name: self.setObjectName("Qt4_create_discrete_widget") self.init_models() # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.previous_energy = None self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget( self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget( self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0, 0, 0, 0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) self._data_path_widget.pathTemplateChangedSignal.connect(\ self.handle_path_conflict) self._acq_widget.acqParametersChangedSignal.connect(\ self.handle_path_conflict) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._processing_widget.enableProcessingSignal.connect(\ self._enable_processing_toggled) # Other --------------------------------------------------------------- def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters( ) def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) self._acq_widget.disable_inverse_beam(False) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() if dc.experiment_type != queue_model_enumerables.EXPERIMENT_TYPE.HELICAL: if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[ 0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[ 0].acquisition_parameters self._acq_widget.update_data_model( self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.get_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot else: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_snapshot() if self._acq_widget.use_inverse_beam(): total_num_images = self._acquisition_parameters.num_images subwedge_size = self._acq_widget.get_num_subwedges() osc_range = self._acquisition_parameters.osc_range osc_start = self._acquisition_parameters.osc_start run_number = self._path_template.run_number subwedges = queue_model_objects.create_inverse_beam_sw( total_num_images, subwedge_size, osc_range, osc_start, run_number) self._acq_widget.set_use_inverse_beam(False) for sw in subwedges: tasks.extend( self.create_dc(sample, sw[3], sw[0], sw[1], sw[2], cpos=cpos, inverse_beam=True)) self._path_template.run_number += 1 else: tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number=None, start_image=None, num_images=None, osc_start=None, sc=None, cpos=None, inverse_beam=False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE tasks.append(dc) return tasks
class CreateDiscreteWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None, name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, QtCore.Qt.WindowFlags(fl), "Standart") if not name: self.setObjectName("Qt4_create_discrete_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.previous_energy = None self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_gbox = QtGui.QGroupBox('Data location', self) self._data_path_gbox.setObjectName('data_path_gbox') self._data_path_widget = \ DataPathWidget(self._data_path_gbox, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_gbox = QtGui.QGroupBox('Processing', self) self._processing_gbox.setObjectName('processing_gbox') self._processing_widget = \ ProcessingWidget(self._processing_gbox, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- self._data_path_gbox_layout = QtGui.QVBoxLayout(self) self._data_path_gbox_layout.addWidget(self._data_path_widget) self._data_path_gbox_layout.setSpacing(0) self._data_path_gbox_layout.setContentsMargins(0, 0, 0, 0) self._data_path_gbox.setLayout(self._data_path_gbox_layout) self._processing_gbox_layout = QtGui.QVBoxLayout(self) self._processing_gbox_layout.addWidget(self._processing_widget) self._processing_gbox_layout.setSpacing(0) self._processing_gbox_layout.setContentsMargins(0, 0, 0, 0) self._processing_gbox.setLayout(self._processing_gbox_layout) self.main_layout = QtGui.QVBoxLayout(self) self.main_layout.addWidget(self._acq_widget) self.main_layout.addWidget(self._data_path_gbox) self.main_layout.addWidget(self._processing_gbox) self.main_layout.addSpacing(10) self.main_layout.setSpacing(0) self.main_layout.setContentsMargins(0, 0, 0, 0) self.setLayout(self.main_layout) # SizePolicies -------------------------------------------------------- """self._acq_widget.setSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Fixed) self._data_path_gbox.setSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding) self._processing_gbox.setSizePolicy(QtGui.QSizePolicy.Expanding, QtGui.QSizePolicy.Expanding)""" # Qt signal/slot connections ------------------------------------------ self._processing_gbox.toggled.connect(self._use_processing_toggled) self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) self.connect(self._acq_widget, QtCore.SIGNAL('mad_energy_selected'), self.mad_energy_selected) self.connect(self._acq_widget, QtCore.SIGNAL("pathTemplateChanged"), self.handle_path_conflict) self.connect(self._data_path_widget, QtCore.SIGNAL("pathTemplateChanged"), self.handle_path_conflict) # Other --------------------------------------------------------------- def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters() def set_tunable_energy(self, state): """ Descript. : """ self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def mad_energy_selected(self, name, energy, state): """ Descript. : """ item = self._current_selected_items[0] model = item.get_model() if state: self._path_template.mad_prefix = name else: self._path_template.mad_prefix = '' run_number = self._beamline_setup_hwobj.queue_model_hwobj.\ get_next_run_number(self._path_template) data_path_widget = self.get_data_path_widget() data_path_widget.set_run_number(run_number) data_path_widget.set_prefix(self._path_template.base_prefix) if self.isEnabled(): if isinstance(item, Qt4_queue_item.TaskQueueItem) and \ not isinstance(item, Qt4_queue_item.DataCollectionGroupQueueItem): model.set_name(self._path_template.get_prefix()) item.setText(0, model.get_name()) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) self._acq_widget.disable_inverse_beam(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() if dc.experiment_type != queue_model_enumerables.EXPERIMENT_TYPE.HELICAL: if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[0].acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) selected_shapes = self._graphics_manager_hwobj.get_selected_shapes() for shape in selected_shapes: if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint): result = True return result # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_snapshot() else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_snapshot([shape]) cpos = copy.deepcopy(shape.get_centred_positions()[0]) cpos.snapshot_image = snapshot if self._acq_widget.use_inverse_beam(): total_num_images = self._acquisition_parameters.num_images subwedge_size = self._acq_widget.get_num_subwedges() osc_range = self._acquisition_parameters.osc_range osc_start = self._acquisition_parameters.osc_start run_number = self._path_template.run_number subwedges = queue_model_objects.create_inverse_beam_sw(total_num_images, subwedge_size, osc_range, osc_start, run_number) self._acq_widget.set_use_inverse_beam(False) for sw in subwedges: tasks.extend(self.create_dc(sample, sw[3], sw[0], sw[1], sw[2], cpos=cpos, inverse_beam = True)) self._path_template.run_number += 1 else: tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number = None, start_image = None, num_images = None, osc_start = None, sc = None, cpos=None, inverse_beam = False): """ Descript. : """ tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.NATIVE tasks.append(dc) return tasks
class CreateHelicalWidget(CreateTaskBase): def __init__(self, parent=None, name=None, fl=0): CreateTaskBase.__init__(self, parent, name, fl, 'Helical') if not name: self.setObjectName("create_helical_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() self._prev_pos = None self._current_pos = None self._list_item_map = {} self.init_models() # Graphic elements ---------------------------------------------------- self._lines_gbox = QtGui.QGroupBox('Lines', self) self._lines_list_widget = QtGui.QListWidget(self._lines_gbox) self._lines_list_widget.setFixedWidth(300) self._lines_list_widget.setFixedHeight(100) self._lines_list_widget.setToolTip(\ "Select the line(s) to perfrom helical scan on") add_button = QtGui.QPushButton("+", self._lines_gbox) add_button.setFixedWidth(20) add_button.setFixedHeight(20) remove_button = QtGui.QPushButton("-", self._lines_gbox) remove_button.setFixedWidth(20) remove_button.setFixedHeight(20) add_button_tool_tip = "Add a line between two saved positions, " \ "CTRL click to select more than one position" add_button.setToolTip(add_button_tool_tip) remove_button_tool_tip = "Remove selected line(s)" remove_button.setToolTip(remove_button_tool_tip) self._acq_widget = AcquisitionWidget( self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_gbox = QtGui.QGroupBox('Data location', self) self._data_path_widget = \ DataPathWidget(self._data_path_gbox, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_gbox = QtGui.QGroupBox('Processing', self) self._processing_gbox.setObjectName('processing_gbox') self._processing_widget = \ ProcessingWidget(self._processing_gbox, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _lines_gbox_gridlayout = QtGui.QGridLayout(self) _lines_gbox_gridlayout.addWidget(self._lines_list_widget, 0, 0, 2, 1) _lines_gbox_gridlayout.addWidget(add_button, 0, 1) _lines_gbox_gridlayout.addWidget(remove_button, 1, 1) _lines_gbox_gridlayout.setSpacing(2) _lines_gbox_gridlayout.setColumnStretch(2, 10) _lines_gbox_gridlayout.setContentsMargins(2, 2, 2, 2) self._lines_gbox.setLayout(_lines_gbox_gridlayout) _data_path_gbox_layout = QtGui.QVBoxLayout(self) _data_path_gbox_layout.addWidget(self._data_path_widget) _data_path_gbox_layout.setSpacing(0) _data_path_gbox_layout.setContentsMargins(0, 0, 0, 0) self._data_path_gbox.setLayout(_data_path_gbox_layout) _processing_gbox_layout = QtGui.QVBoxLayout(self) _processing_gbox_layout.addWidget(self._processing_widget) _processing_gbox_layout.setSpacing(0) _processing_gbox_layout.setContentsMargins(0, 0, 0, 0) self._processing_gbox.setLayout(_processing_gbox_layout) _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._lines_gbox) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_gbox) _main_vlayout.addWidget(self._processing_gbox) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0, 0, 0, 0) self.setLayout(_main_vlayout) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ add_button.clicked.connect(self.add_clicked) remove_button.clicked.connect(self.remove_clicked) self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) QtCore.QObject.connect(self._lines_list_widget, QtCore.SIGNAL("selectionChanged()"), self.list_box_selection_changed) QtCore.QObject.connect(self._data_path_widget, QtCore.SIGNAL("pathTemplateChanged"), self.handle_path_conflict) def init_models(self): CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters( ) if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters() else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters( ) self._path_template = queue_model_objects.PathTemplate() def add_clicked(self): selected_shapes = self._graphics_manager_hwobj.get_selected_points() if len(selected_shapes) == 2: p1 = selected_shapes[0] p2 = selected_shapes[1] line = graphics_manager.GraphicsItemLine(p1, p2) line.show() self._graphics_manager_hwobj.add_shape(line) points_index = line.get_points_index() if points_index: display_name = "Line (points: %d, %d / kappa: %.2f phi: %.2f)" %\ (points_index[0], points_index[1], p1.centred_position.kappa, p1.centred_position.kappa_phi) else: display_name = "Line (points: #, #)" list_widget_item = QtGui.QListWidgetItem(display_name, self._lines_list_widget) self._list_item_map[list_widget_item] = line # De select previous items for item in self.selected_items(): item.setSelected(False) list_widget_item.setSelected(True) else: print "Select two points to create a helical line." def remove_clicked(self): selected_items = self.selected_items() if selected_items: for item in selected_items: self._lines_list_widget.takeItem( self._lines_list_widget.row(item)) line = self._list_item_map[item] self._graphics_manager_hwobj.delete_shape(line) del self._list_item_map[item] # Calback from graphics_manager, called when a shape is deleted def shape_deleted(self, shape): if isinstance(shape, graphics_manager.GraphicsItemPoint): items_to_remove = [] for (list_item, line) in self._list_item_map.iteritems(): if shape in line.get_graphics_points(): items_to_remove.append((list_item, line)) for (list_item, line) in items_to_remove: self._lines_list_widget.takeItem( self._lines_list_widget.row(list_item)) del self._list_item_map[list_item] def centred_position_selection(self, positions): if len(positions) == 1: self._prev_pos = positions[0] elif len(positions) == 2: for pos in positions: if pos != self._prev_pos: self._current_pos = pos else: self._prev_pos = None self._current_pos = None def list_box_selection_changed(self): self.show_selected_lines() def selected_items(self): selected_items = [] for item_index in range(self._lines_list_widget.count()): if self._lines_list_widget.item(item_index).isSelected(): selected_items.append(self._lines_list_widget.item(item_index)) return selected_items def show_selected_lines(self): selected_items = self.selected_items() for list_item in self._list_item_map.keys(): line = self._list_item_map[list_item] if list_item in selected_items: self._graphics_manager.select_shape(line) else: self._graphics_manager.de_select_shape(line) def approve_creation(self): base_result = CreateTaskBase.approve_creation(self) selected_lines = False if self.selected_items(): selected_lines = True else: logging.getLogger("user_level_log").\ warning("No lines selected, please select one or more lines.") return base_result and selected_lines def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def select_shape_with_cpos(self, start_cpos, end_cpos): self._graphics_manager_hwobj.de_select_all() selected_line = None for shape in self._graphics_manager_hwobj.get_shapes(): if isinstance(shape, graphics_manager.GraphicsItemLine): if shape.get_centred_positions()[0] == start_cpos and\ shape.get_centred_positions()[1] == end_cpos: self._graphics_manager_hwobj.de_select_all() shape.setSelected(True) selected_line = shape #de-select previous selected list items and #select the current shape (Line). for (list_item, shape) in self._list_item_map.iteritems(): if selected_line is shape: list_item.setSelected(True) else: list_item.setSelected(False) def single_item_selection(self, tree_item): CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() self._processing_parameters = sample_model.processing_parameters #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_widget.update_data_model( self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): data_collection = tree_item.get_model() if data_collection.experiment_type == EXPERIMENT_TYPE.HELICAL: if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) self._path_template = data_collection.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters if len(data_collection.acquisitions) == 2: start_cpos = data_collection.acquisitions[0].acquisition_parameters.\ centred_position end_cpos = data_collection.acquisitions[1].acquisition_parameters.\ centred_position self.select_shape_with_cpos(start_cpos, end_cpos) self._acq_widget.update_data_model( self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) self._processing_parameters = data_collection.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): self._processing_widget.update_data_model( self._processing_parameters) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) def _create_task(self, sample, shape): data_collections = [] if isinstance(shape, graphics_manager.GraphicsItemLine): snapshot = self._graphics_manager_hwobj.get_snapshot(shape) # Acquisition for start position start_acq = self._create_acq(sample) start_acq.acquisition_parameters.\ centred_position = copy.deepcopy(shape.cp_start.centred_position) start_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot start_acq.path_template.suffix = self._session_hwobj.suffix # Add another acquisition for the end position end_acq = self._create_acq(sample) end_acq.acquisition_parameters.\ centred_position = shape.cp_end.centred_position end_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot end_acq.path_template.suffix = self._session_hwobj.suffix processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([start_acq, end_acq], sample.crystals[0], processing_parameters) dc.set_name(start_acq.path_template.get_prefix()) dc.set_number(start_acq.path_template.run_number) dc.experiment_type = EXPERIMENT_TYPE.HELICAL data_collections.append(dc) self._path_template.run_number += 1 return data_collections
class CreateEnergyScanWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent=None,name=None, fl=0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Energy scan') if not name: self.setObjectName("create_energy_scan_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._periodic_table_widget = PeriodicTableWidget(self) self._data_path_widget = DataPathWidget(self, data_model = self._path_template, layout = 'vertical') _parameters_gbox = QGroupBox('Parameters', self) self._adjust_transmission_cbox = QCheckBox(\ "Adjust transmission", _parameters_gbox) self._adjust_transmission_cbox.setChecked(False) self._adjust_transmission_cbox.setEnabled(True) self._max_transmission_label = QLabel("Maximum transmission:") self._max_transmission_ledit = QLineEdit("20", _parameters_gbox) self._max_transmission_ledit.setFixedWidth(80) self._max_transmission_ledit.setEnabled(False) # Layout -------------------------------------------------------------- _parameters_gbox_hlayout = QGridLayout(_parameters_gbox) _parameters_gbox_hlayout.addWidget(self._adjust_transmission_cbox, 0, 0) _parameters_gbox_hlayout.addWidget(self._max_transmission_label, 1, 0) _parameters_gbox_hlayout.addWidget(self._max_transmission_ledit, 1, 1) _parameters_gbox_hlayout.setColumnStretch(2, 1) _parameters_gbox_hlayout.setSpacing(2) _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._periodic_table_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(_parameters_gbox) _main_vlayout.setContentsMargins(2, 2, 2, 2) _main_vlayout.setSpacing(6) _main_vlayout.addStretch(10) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ #self._periodic_table_widget.elementEdgeSelectedSignal.connect(\ # self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.connect(\ self.path_template_changed) self._adjust_transmission_cbox.stateChanged.connect(\ self.adjust_transmission_state_changed) self._max_transmission_ledit.textEdited.connect(\ self.max_transmission_value_changed) def set_expert_mode(self, state): self._adjust_transmission_cbox.setEnabled(state) self._max_transmission_label.setEnabled(state) self._max_transmission_ledit.setEnabled(state) def enable_compression(self, state): CreateTaskBase.enable_compression(self, False) def set_beamline_setup(self, bl_setup_hwobj): CreateTaskBase.set_beamline_setup(self, bl_setup_hwobj) self._periodic_table_widget.set_elements(\ self._beamline_setup_hwobj.energyscan_hwobj.getElements()) self.enable_compression(False) try: max_transmission_value = self._beamline_setup_hwobj.\ energyscan_hwobj.get_max_transmission_value() self._adjust_transmission_cbox.setEnabled(True) self._adjust_transmission_cbox.setChecked(True) self._beamline_setup_hwobj.energyscan_hwobj.adjust_transmission(True) if max_transmission_value: self._max_transmission_ledit.setText("%.2f" % max_transmission_value) except: pass def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self.enery_scan = queue_model_objects.EnergyScan() self._path_template.start_num = 1 self._path_template.num_files = 1 self._path_template.suffix = 'raw' self._path_template.compression = False def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) escan_model = tree_item.get_model() if isinstance(tree_item, Qt4_queue_item.EnergyScanQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) if escan_model.get_path_template(): self._path_template = escan_model.get_path_template() self._data_path_widget.update_data_model(self._path_template) elif not(isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem)): self.setDisabled(True) def approve_creation(self): """ Descript. : """ base_result = CreateTaskBase.approve_creation(self) selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge() if not selected_element: logging.getLogger("GUI").\ warning("No element selected, please select an element.") return base_result and selected_element # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ data_collections = [] selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge() if selected_element: if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot path_template = self._create_path_template(sample, self._path_template) energy_scan = queue_model_objects.EnergyScan(sample, path_template, cpos) energy_scan.set_name(path_template.get_prefix()) energy_scan.set_number(path_template.run_number) energy_scan.element_symbol = selected_element energy_scan.edge = selected_edge data_collections.append(energy_scan) self._path_template.run_number += 1 else: logging.getLogger("GUI").\ info("No element selected, please select an element.") return data_collections def element_edge_selected(self, element, edge): if len(self._current_selected_items) == 1: item = self._current_selected_items[0] if isinstance(item, Qt4_queue_item.EnergyScanQueueItem): item.get_model().element_symbol = str(element) item.get_model().edge = str(edge) def adjust_transmission_state_changed(self, state): self._max_transmission_ledit.setEnabled(state) self._beamline_setup_hwobj.energyscan_hwobj.adjust_transmission(state) def max_transmission_value_changed(self, value): try: max_transmission = float(value) self._beamline_setup_hwobj.energyscan_hwobj.set_max_transmission(max_transmission) except: pass
class CreateStillScanWidget(CreateTaskBase): def __init__(self,parent=None, name=None, fl=0): CreateTaskBase.__init__(self, parent, name, Qt.WindowFlags(fl), "Still") if not name: self.setObjectName("create_still_scan_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._acq_widget = AcquisitionStillWidget(self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget(self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(6) _main_vlayout.setContentsMargins(2, 2, 2, 2) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._processing_widget.enableProcessingSignal.connect(\ self._run_processing_toggled) # Other --------------------------------------------------------------- def use_osc_start(self, status): pass def update_exp_time_limits(self, status): pass def init_models(self): CreateTaskBase.init_models(self) self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_acquisition_values") self._acquisition_parameters.num_triggers = 1 self._acquisition_parameters.num_images_per_trigger = 1 self._processing_widget.processing_widget.run_processing_parallel_cbox.setChecked(\ self._beamline_setup_hwobj._get_run_processing_parallel()) def set_tunable_energy(self, state): self._acq_widget.set_tunable_energy(state) def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_parameters = sample_model.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): dc = tree_item.get_model() self._acq_widget.use_kappa(False) if not dc.is_helical(): if dc.is_executed(): self.setDisabled(True) else: self.setDisabled(False) sample_data_model = self.get_sample_item(tree_item).get_model() energy_scan_result = sample_data_model.crystals[0].energy_scan_result self._acq_widget.set_energies(energy_scan_result) #self._acq_widget.disable_inverse_beam(True) self._path_template = dc.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = dc.acquisitions[0].acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(dc.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = dc.processing_parameters self._processing_widget.update_data_model(self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) def _create_task(self, sample, shape): tasks = [] cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() tasks.extend(self.create_dc(sample, cpos=cpos)) self._path_template.run_number += 1 return tasks def create_dc(self, sample, run_number=None, start_image=None, num_images=None, osc_start=None, sc=None, cpos=None, inverse_beam=False): tasks = [] # Acquisition for start position acq = self._create_acq(sample) if run_number: acq.path_template.run_number = run_number if start_image: acq.acquisition_parameters.first_image = start_image acq.path_template.start_num = start_image if num_images: acq.acquisition_parameters.num_images = num_images acq.path_template.num_files = num_images if osc_start: acq.acquisition_parameters.osc_start = osc_start if inverse_beam: acq.acquisition_parameters.inverse_beam = False acq.acquisition_parameters.centred_position = cpos processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([acq], sample.crystals[0], processing_parameters) dc.set_name(acq.path_template.get_prefix()) dc.set_number(acq.path_template.run_number) dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.STILL dc.run_processing_after = self._processing_widget.processing_widget.\ run_processing_after_cbox.isChecked() dc.run_processing_parallel = self._processing_widget.processing_widget.\ run_processing_parallel_cbox.isChecked() dc.set_requires_centring(False) tasks.append(dc) return tasks
class CreateEnergyScanWidget(CreateTaskBase): """ Descript. : """ def __init__(self, parent = None,name = None, fl = 0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Energy scan') if not name: self.setObjectName("create_energy_scan_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self.init_models() # Graphic elements ---------------------------------------------------- self._periodic_table_widget = PeriodicTableWidget(self) self._data_path_widget = DataPathWidget(self, data_model = self._path_template, layout = 'vertical') # Layout -------------------------------------------------------------- self.main_layout = QtGui.QVBoxLayout(self) self.main_layout.addWidget(self._periodic_table_widget) self.main_layout.addWidget(self._data_path_widget) self.main_layout.setContentsMargins(0, 0, 0, 0) self.main_layout.setSpacing(6) self.main_layout.addStretch(10) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._periodic_table_widget.elementEdgeSelectedSignal.\ connect(self.acq_parameters_changed) self._data_path_widget.pathTemplateChangedSignal.\ connect(self.acq_parameters_changed) def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self.enery_scan = queue_model_objects.EnergyScan() self._path_template.start_num = 1 self._path_template.num_files = 1 self._path_template.suffix = 'raw' def set_energy_scan_hwobj(self, energy_scan_hwobj): """ Descript. : """ self._periodic_table_widget.set_elements(\ energy_scan_hwobj.getElements()) def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) escan_model = tree_item.get_model() if isinstance(tree_item, Qt4_queue_item.EnergyScanQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) if escan_model.get_path_template(): self._path_template = escan_model.get_path_template() self._data_path_widget.update_data_model(self._path_template) elif not(isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem)): self.setDisabled(True) def approve_creation(self): """ Descript. : """ base_result = CreateTaskBase.approve_creation(self) selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge() if not selected_element: logging.getLogger("GUI").\ info("No element selected, please select an element.") return base_result and selected_element # Called by the owning widget (task_toolbox_widget) to create # a collection. When a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ data_collections = [] selected_element, selected_edge = self._periodic_table_widget.get_selected_element_edge() if selected_element: if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot path_template = self._create_path_template(sample, self._path_template) energy_scan = queue_model_objects.EnergyScan(sample, path_template, cpos) energy_scan.set_name(path_template.get_prefix()) energy_scan.set_number(path_template.run_number) energy_scan.element_symbol = selected_element energy_scan.edge = selected_edge data_collections.append(energy_scan) self._path_template.run_number += 1 else: logging.getLogger("GUI").\ info("No element selected, please select an element.") return data_collections def element_edge_selected(self, element, edge): if len(self._current_selected_items) == 1: item = self._current_selected_items[0] if isinstance(item, Qt4_queue_item.EnergyScanQueueItem): item.get_model().element_symbol = str(element) item.get_model().edge = str(edge)
class CreateHelicalWidget(CreateTaskBase): def __init__(self, parent=None, name=None, fl=0): CreateTaskBase.__init__(self, parent, name, fl, 'Helical') if not name: self.setObjectName("create_helical_widget") self.init_models() # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._lines_map = {} # Graphic elements ---------------------------------------------------- self._lines_widget = uic.loadUi(os.path.join(\ os.path.dirname(__file__), "ui_files/Qt4_helical_line_widget_layout.ui")) self._acq_widget = AcquisitionWidget( self, "acquisition_widget", layout='vertical', acq_params=self._acquisition_parameters, path_template=self._path_template) self._data_path_widget = DataPathWidget(self, 'create_dc_path_widget', data_model=self._path_template, layout='vertical') self._processing_widget = ProcessingWidget( self, data_model=self._processing_parameters) # Layout -------------------------------------------------------------- _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._lines_widget) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._processing_widget) _main_vlayout.addStretch(0) _main_vlayout.setSpacing(2) _main_vlayout.setContentsMargins(0, 0, 0, 0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ #self._lines_widget.lines_treewidget.itemSelectionChanged.connect(\ # self.lines_treewidget_selection_changed) self._lines_widget.create_line_button.clicked.connect(\ self.create_line_button_clicked) self._lines_widget.remove_line_button.clicked.connect(\ self.remove_line_button_clicked) self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) self._data_path_widget.pathTemplateChangedSignal.connect(\ self.handle_path_conflict) self._acq_widget.madEnergySelectedSignal.connect(\ self.mad_energy_selected) self._acq_widget.acqParametersChangedSignal.connect(\ self.handle_path_conflict) self._processing_widget.enableProcessingSignal.connect(\ self._enable_processing_toggled) # Other --------------------------------------------------------------- for col in range(self._lines_widget.lines_treewidget.columnCount()): self._lines_widget.lines_treewidget.resizeColumnToContents(col) def init_models(self): CreateTaskBase.init_models(self) self._energy_scan_result = queue_model_objects.EnergyScanResult() self._processing_parameters = queue_model_objects.ProcessingParameters( ) if self._beamline_setup_hwobj is not None: has_shutter_less = self._beamline_setup_hwobj.\ detector_has_shutterless() self._acquisition_parameters.shutterless = has_shutter_less self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_acquisition_parameters("default_helical_values") else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters( ) self._path_template = queue_model_objects.PathTemplate() def shape_created(self, shape, shape_type): if shape_type == "Line": self._lines_widget.lines_treewidget.clearSelection() info_str_list = QtCore.QStringList() info_str_list.append(shape.get_display_name()) info_str_list.append("%d" % shape.get_points_index()[0]) info_str_list.append("%d" % shape.get_points_index()[1]) lines_treewidget_item = QtGui.QTreeWidgetItem(\ self._lines_widget.lines_treewidget, info_str_list) lines_treewidget_item.setSelected(True) self._lines_map[shape] = lines_treewidget_item self.lines_treewidget_selection_changed() def shape_deleted(self, shape, shape_type): if self._lines_map.get(shape): shape_index = self._lines_widget.lines_treewidget.\ indexFromItem(self._lines_map[shape]) self._lines_widget.lines_treewidget.\ takeTopLevelItem(shape_index.row()) self._lines_map.pop(shape) def approve_creation(self): base_result = CreateTaskBase.approve_creation(self) if len(self._lines_widget.lines_treewidget.selectedItems()) == 0: logging.getLogger("user_level_log").\ warning("No lines selected, please select one or more lines.") return False else: return base_result def update_processing_parameters(self, crystal): self._processing_parameters.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma self._processing_widget.update_data_model(self._processing_parameters) def select_shape_with_cpos(self, start_cpos, end_cpos, num_images): selected_line = None for shape in self._graphics_manager_hwobj.get_shapes(): if isinstance(shape, GraphicsItemLine): (line_start_cpos, line_end_cpos) = shape.get_centred_positions() if line_start_cpos == start_cpos and line_end_cpos == end_cpos: self._graphics_manager_hwobj.de_select_all() self._graphics_manager_hwobj.select_line(shape) shape.set_num_images(num_images) selected_line = shape #de-select previous selected list items and #select the current shape (Line). for (list_item, shape) in self._lines_map.iteritems(): if selected_line == shape: list_item.setSelected(True) else: list_item.setSelected(False) def single_item_selection(self, tree_item): CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): sample_model = tree_item.get_model() self._processing_parameters = sample_model.processing_parameters #self._processing_parameters = copy.deepcopy(self._processing_parameters) self._processing_widget.update_data_model( self._processing_parameters) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): data_collection = tree_item.get_model() if data_collection.experiment_type == EXPERIMENT_TYPE.HELICAL: self.setDisabled(tree_item.get_model().is_executed()) self._path_template = data_collection.get_path_template() self._data_path_widget.update_data_model(self._path_template) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters if len(data_collection.acquisitions) == 2: start_cpos = data_collection.acquisitions[0].acquisition_parameters.\ centred_position end_cpos = data_collection.acquisitions[1].acquisition_parameters.\ centred_position num_images = data_collection.acquisitions[0].acquisition_parameters.\ num_images self.select_shape_with_cpos(start_cpos, end_cpos, num_images) self._acq_widget.update_data_model( self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) self._processing_parameters = data_collection.processing_parameters self._processing_widget.update_data_model( self._processing_parameters) else: self.setDisabled(True) else: self.setDisabled(True) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionGroupQueueItem) or \ isinstance(tree_item, Qt4_queue_item.DataCollectionQueueItem): self._processing_widget.update_data_model( self._processing_parameters) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) def _create_task(self, sample, shape): data_collections = [] for shape in self.get_selected_lines(): snapshot = self._graphics_manager_hwobj.get_snapshot(shape) # Acquisition for start position start_acq = self._create_acq(sample) start_graphical_point, end_graphical_point = \ shape.get_graphical_points() start_acq.acquisition_parameters.\ centred_position = copy.deepcopy(start_graphical_point.get_centred_position()) start_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot start_acq.path_template.suffix = self._session_hwobj.suffix # Add another acquisition for the end position end_acq = self._create_acq(sample) end_acq.acquisition_parameters.\ centred_position = copy.deepcopy(end_graphical_point.get_centred_position()) end_acq.acquisition_parameters.centred_position.\ snapshot_image = snapshot end_acq.path_template.suffix = self._session_hwobj.suffix processing_parameters = copy.deepcopy(self._processing_parameters) dc = queue_model_objects.DataCollection([start_acq, end_acq], sample.crystals[0], processing_parameters) dc.set_name(start_acq.path_template.get_prefix()) dc.set_number(start_acq.path_template.run_number) dc.set_experiment_type(EXPERIMENT_TYPE.HELICAL) dc.set_requires_centring(False) data_collections.append(dc) self._path_template.run_number += 1 return data_collections def lines_treewidget_selection_changed(self): for shape, list_item in self._lines_map.iteritems(): shape.setSelected(list_item.isSelected()) def create_line_button_clicked(self): self._graphics_manager_hwobj.create_line() def remove_line_button_clicked(self): line_to_delete = None for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): line_to_delete = line break if line_to_delete: self._graphics_manager_hwobj.delete_shape(line_to_delete) def get_selected_lines(self): selected_lines = [] for line, treewidget_item in self._lines_map.iteritems(): if treewidget_item.isSelected(): selected_lines.append(line) return selected_lines
class CreateCharWidget(CreateTaskBase): """ Descript. : """ def __init__(self,parent = None,name = None, fl = 0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation') self.setObjectName("create_char_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._vertical_dimension_widget = None self._current_selected_item = None self.init_models() self._char_params_mib = DataModelInputBinder(self._char_params) # Graphic elements ---------------------------------------------------- self._acq_widget = \ AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters, path_template = self._path_template) self._data_path_widget = DataPathWidget(self, data_model = self._path_template, layout = 'vertical') self._vertical_dimension_widget = loadUi(os.path.join(os.path.dirname(__file__), 'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui')) self._char_widget = loadUi(os.path.join(os.path.dirname(__file__), 'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui')) # Layout -------------------------------------------------------------- _main_vlayout = QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_widget) _main_vlayout.addWidget(self._char_widget) _main_vlayout.addWidget(self._vertical_dimension_widget) _main_vlayout.setContentsMargins(2, 2, 2, 2) _main_vlayout.setSpacing(6) _main_vlayout.addStretch(0) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ self._data_path_widget.pathTemplateChangedSignal.\ connect(self.path_template_changed) self._acq_widget.acqParametersChangedSignal.\ connect(self.acq_parameters_changed) self._vertical_dimension_widget.space_group_ledit.activated.\ connect(self._space_group_change) #self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"), # self.use_induced_burn) self._char_widget.characterisation_gbox.toggled.connect(\ self.characterisation_gbox_toggled) self._char_widget.wait_result_cbx.toggled.connect(\ self.wait_results_cbx_toggled) self._char_widget.execute_plan_cbx.toggled.connect(\ self.run_diffraction_plan_cbx_toggled) # Other --------------------------------------------------------------- self._char_params_mib.bind_value_update( 'opt_sad', self._char_widget.optimised_sad_cbx, bool, None) self._char_params_mib.bind_value_update( 'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool, None) #self._char_params_mib.bind_value_update('determine_rad_params', # induced_burn_cbx, # bool, None) self._char_params_mib.bind_value_update( 'strategy_complexity', self._char_widget.start_comp_cbox, int, None) self._char_params_mib.\ bind_value_update('max_crystal_vdim', self._vertical_dimension_widget.max_vdim_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vdim', self._vertical_dimension_widget.min_vdim_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vphi', self._vertical_dimension_widget.min_vphi_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('max_crystal_vphi', self._vertical_dimension_widget.max_vphi_ledit, float, QDoubleValidator(0.0, 1000, 2, self)) self._vertical_dimension_widget.space_group_ledit.addItems( queue_model_enumerables.XTAL_SPACEGROUPS ) self._data_path_widget.data_path_layout.compression_cbox.setVisible(False) def enable_compression(self, state): CreateTaskBase.enable_compression(self, False) def use_induced_burn(self, state): """ Descript. : """ self._acquisition_parameters.induce_burn = state def _space_group_change(self, index): """ Descript. : """ self._char_params.space_group = ( queue_model_enumerables.XTAL_SPACEGROUPS[index] ) def _set_space_group(self, space_group): """ Descript. : """ index = 0 if self._vertical_dimension_widget: if space_group in queue_model_enumerables.XTAL_SPACEGROUPS: index = queue_model_enumerables.XTAL_SPACEGROUPS.index(space_group) self._space_group_change(index) self._vertical_dimension_widget.space_group_ledit.\ setCurrentIndex(index) def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._init_models() def _init_models(self): """ Descript. : """ self._char = queue_model_objects.Characterisation() self._char_params = self._char.characterisation_parameters self._processing_parameters = queue_model_objects.ProcessingParameters() self._set_space_group(self._processing_parameters.space_group) if self._beamline_setup_hwobj is not None: self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_char_acq_parameters() self._char_params = self._beamline_setup_hwobj.\ get_default_characterisation_parameters() else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters() self._path_template.reference_image_prefix = 'ref' # The num images drop down default value is 1 # we would like it to be 2 self._acquisition_parameters.num_images = 2 self._char.characterisation_software =\ queue_model_enumerables.COLLECTION_ORIGIN.EDNA self._path_template.num_files = 2 self._path_template.compression = False self._acquisition_parameters.shutterless = False def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): #self._init_models() if self._char_params.space_group == "": sample_model = tree_item.get_model() self._set_space_group(sample_model.processing_parameters.space_group) #self._acq_widget.update_data_model(self._acquisition_parameters, # self._path_template) #self._char_params_mib.set_model(self._char_params) elif isinstance(tree_item, Qt4_queue_item.BasketQueueItem): self.setDisabled(False) elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) self._char = tree_item.get_model() if self._char.get_path_template(): self._path_template = self._char.get_path_template() self._data_path_widget.update_data_model(self._path_template) data_collection = self._char.reference_image_collection self._char_params = self._char.characterisation_parameters self._char_params_mib.set_model(self._char_params) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) #self.get_acquisition_widget().use_osc_start(True) if len(data_collection.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = data_collection.processing_parameters else: self.setDisabled(True) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._char_params.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) selected_shapes = self._graphics_manager_hwobj.get_selected_shapes() for shape in selected_shapes: if isinstance(shape, GraphicsItemPoint): result = True return result # Called by the owning widget (task_toolbox_widget) to create # a collection. when a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if not shape or not isinstance(shape, GraphicsItemPoint): cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_scene_snapshot() else: # Shapes selected and sample is mounted, get the # centred positions for the shapes snapshot = self._graphics_manager_hwobj.\ get_scene_snapshot(shape) cpos = copy.deepcopy(shape.get_centred_position()) cpos.snapshot_image = snapshot char_params = copy.deepcopy(self._char_params) acq = self._create_acq(sample) dc = queue_model_objects.\ DataCollection([acq], sample.crystals[0], self._processing_parameters) # Reference images for characterisations should be taken 90 deg apart # this is achived by setting overap to -89 acq.acquisition_parameters.overlap = -89 acq.acquisition_parameters.centred_position = cpos dc.acquisitions[0] = acq dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF dc.run_processing_parallel = False char = queue_model_objects.Characterisation(dc, char_params) char.set_name(dc.acquisitions[0].\ path_template.get_prefix()) char.set_number(dc.acquisitions[0].\ path_template.run_number) char.run_characterisation = self._char_widget.characterisation_gbox.isChecked() char.wait_result = self._char_widget.wait_result_cbx.isChecked() char.run_diffraction_plan = self._char_widget.execute_plan_cbx.isChecked() char.diff_plan_compression = self._tree_brick.compression_state tasks.append(char) self._path_template.run_number += 1 return tasks def characterisation_gbox_toggled(self, state): if self._char: self._char.run_characterisation = state def wait_results_cbx_toggled(self, state): if self._char: self._char.wait_result = state def run_diffraction_plan_cbx_toggled(self, state): if self._char: self._char.run_diffraction_plan = state
class CreateCharWidget(CreateTaskBase): """ Descript. : """ def __init__(self,parent = None,name = None, fl = 0): """ Descript. : """ CreateTaskBase.__init__(self, parent, name, fl, 'Characterisation') if not name: self.setName("create_char_widget") # Hardware objects ---------------------------------------------------- # Internal variables -------------------------------------------------- self._current_selected_item = None self.init_models() self._char_params_mib = DataModelInputBinder(self._char_params) # Graphic elements ---------------------------------------------------- self._acq_widget = \ AcquisitionWidgetSimple(self, acq_params = self._acquisition_parameters, path_template = self._path_template) self._data_path_gbox = QtGui.QGroupBox('Data location', self) self._data_path_widget = DataPathWidget( self._data_path_gbox, data_model = self._path_template, layout = 'vertical') self._vertical_dimension_widget = uic.loadUi(os.path.join(os.path.dirname(__file__), 'ui_files/Qt4_vertical_crystal_dimension_widget_layout.ui')) self._char_widget = uic.loadUi(os.path.join(os.path.dirname(__file__), 'ui_files/Qt4_characterise_simple_widget_vertical_layout.ui')) gbox = self._char_widget.findChild(QtGui.QGroupBox, "characterisation_gbox") p = gbox.palette(); p.setColor(QtGui.QPalette.Window, QtCore.Qt.red); p.setColor(QtGui.QPalette.Highlight, QtCore.Qt.red); gbox.setPalette(p); # Layout -------------------------------------------------------------- _data_path_gbox_layout = QtGui.QVBoxLayout(self) _data_path_gbox_layout.addWidget(self._data_path_widget) _data_path_gbox_layout.setSpacing(0) _data_path_gbox_layout.setContentsMargins(0,0,0,0) self._data_path_gbox.setLayout(_data_path_gbox_layout) _main_vlayout = QtGui.QVBoxLayout(self) _main_vlayout.addWidget(self._acq_widget) _main_vlayout.addWidget(self._data_path_gbox) _main_vlayout.addWidget(self._char_widget) _main_vlayout.addWidget(self._vertical_dimension_widget) _main_vlayout.setSpacing(0) _main_vlayout.setContentsMargins(0,0,0,0) self.setLayout(_main_vlayout) # SizePolicies -------------------------------------------------------- # Qt signal/slot connections ------------------------------------------ # Other --------------------------------------------------------------- self._char_params_mib.bind_value_update( 'opt_sad', self._char_widget.optimised_sad_cbx, bool, None) self._char_params_mib.bind_value_update( 'account_rad_damage', self._char_widget.account_rad_dmg_cbx, bool, None) #self._char_params_mib.bind_value_update('determine_rad_params', # induced_burn_cbx, # bool, None) self._char_params_mib.bind_value_update( 'strategy_complexity', self._char_widget.start_comp_cbox, int, None) self._char_params_mib.\ bind_value_update('max_crystal_vdim', self._vertical_dimension_widget.max_vdim_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vdim', self._vertical_dimension_widget.min_vdim_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('min_crystal_vphi', self._vertical_dimension_widget.min_vphi_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._char_params_mib.\ bind_value_update('max_crystal_vphi', self._vertical_dimension_widget.max_vphi_ledit, float, QtGui.QDoubleValidator(0.0, 1000, 2, self)) self._vertical_dimension_widget.space_group_ledit.addItems(XTAL_SPACEGROUPS) self._data_path_widget.data_path_layout.prefix_ledit.textChanged.\ connect(self._prefix_ledit_change) self._data_path_widget.data_path_layout.run_number_ledit.textChanged.\ connect(self._run_number_ledit_change) self._vertical_dimension_widget.space_group_ledit.activated.\ connect(self._space_group_change) self.connect(self._data_path_widget, QtCore.SIGNAL("pathTemplateChanged"), self.handle_path_conflict) #self.connect(induced_burn_cbx, QtCore.SIGNAL("toggled(bool)"), # self.use_induced_burn) def use_induced_burn(self, state): """ Descript. : """ self._acquisition_parameters.induce_burn = state def _space_group_change(self, index): """ Descript. : """ self._char_params.space_group = queue_model_enumerables.\ XTAL_SPACEGROUPS[index] def _set_space_group(self, space_group): """ Descript. : """ index = 0 if space_group in XTAL_SPACEGROUPS: index = XTAL_SPACEGROUPS.index(space_group) self._space_group_change(index) self._vertical_dimension_widget.space_group_ledit.setCurrentIndex(index) def init_models(self): """ Descript. : """ CreateTaskBase.init_models(self) self._init_models() def _init_models(self): """ Descript. : """ self._char = queue_model_objects.Characterisation() self._char_params = self._char.characterisation_parameters self._processing_parameters = queue_model_objects.ProcessingParameters() if self._beamline_setup_hwobj is not None: self._acquisition_parameters = self._beamline_setup_hwobj.\ get_default_char_acq_parameters() self._char_params = self._beamline_setup_hwobj.\ get_default_characterisation_parameters() try: transmission = self._beamline_setup_hwobj.transmission_hwobj.getAttFactor() transmission = round(float(transmission), 1) except AttributeError: transmission = 0 try: resolution = self._beamline_setup_hwobj.resolution_hwobj.getPosition() resolution = round(float(resolution), 3) except AttributeError: resolution = 0 try: energy = self._beamline_setup_hwobj.energy_hwobj.getCurrentEnergy() energy = round(float(energy), 4) except AttributeError: energy = 0 self._acquisition_parameters.resolution = resolution self._acquisition_parameters.energy = energy self._acquisition_parameters.transmission = transmission else: self._acquisition_parameters = queue_model_objects.AcquisitionParameters() return self._path_template.reference_image_prefix = 'ref' # The num images drop down default value is 1 # we would like it to be 2 self._acquisition_parameters.num_images = 2 self._char.characterisation_software =\ queue_model_enumerables.COLLECTION_ORIGIN.EDNA self._path_template.num_files = 2 self._acquisition_parameters.shutterless = False def single_item_selection(self, tree_item): """ Descript. : """ CreateTaskBase.single_item_selection(self, tree_item) if isinstance(tree_item, Qt4_queue_item.SampleQueueItem): self._init_models() self._set_space_group(self._char_params.space_group) self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self._char_params_mib.set_model(self._char_params) #self._char_params = copy.deepcopy(self._char_params) #self._acquisition_parameters = copy.deepcopy(self._acquisition_parameters) elif isinstance(tree_item, Qt4_queue_item.CharacterisationQueueItem): if tree_item.get_model().is_executed(): self.setDisabled(True) else: self.setDisabled(False) self._char = tree_item.get_model() if self._char.get_path_template(): self._path_template = self._char.get_path_template() self._data_path_widget.update_data_model(self._path_template) data_collection = self._char.reference_image_collection self._char_params = self._char.characterisation_parameters self._char_params_mib.set_model(self._char_params) self._acquisition_parameters = data_collection.acquisitions[0].\ acquisition_parameters self._acq_widget.update_data_model(self._acquisition_parameters, self._path_template) self.get_acquisition_widget().use_osc_start(True) if len(data_collection.acquisitions) == 1: self.select_shape_with_cpos(self._acquisition_parameters.\ centred_position) self._processing_parameters = data_collection.processing_parameters else: self.setDisabled(True) def update_processing_parameters(self, crystal): """ Descript. : """ self._processing_parameters.space_group = crystal.space_group self._char_params.space_group = crystal.space_group self._processing_parameters.cell_a = crystal.cell_a self._processing_parameters.cell_alpha = crystal.cell_alpha self._processing_parameters.cell_b = crystal.cell_b self._processing_parameters.cell_beta = crystal.cell_beta self._processing_parameters.cell_c = crystal.cell_c self._processing_parameters.cell_gamma = crystal.cell_gamma def approve_creation(self): """ Descript. : """ result = CreateTaskBase.approve_creation(self) selected_shapes = self._graphics_manager_hwobj.get_selected_shapes() for shape in selected_shapes: if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint): result = True return result # Called by the owning widget (task_toolbox_widget) to create # a collection. when a data collection group is selected. def _create_task(self, sample, shape): """ Descript. : """ tasks = [] if not shape: cpos = queue_model_objects.CentredPosition() cpos.snapshot_image = self._graphics_manager_hwobj.get_snapshot() else: # Shapes selected and sample is mounted, get the # centred positions for the shapes if isinstance(shape, Qt4_GraphicsManager.GraphicsItemPoint): snapshot = self._graphics_manager_hwobj.\ get_snapshot([shape]) cpos = copy.deepcopy(shape.get_centred_positions()[0]) cpos.snapshot_image = snapshot char_params = copy.deepcopy(self._char_params) acq = self._create_acq(sample) dc = queue_model_objects.\ DataCollection([acq], sample.crystals[0], self._processing_parameters) # Reference images for characterisations should be taken 90 deg apart # this is achived by setting overap to -89 acq.acquisition_parameters.overlap = -89 acq.acquisition_parameters.centred_position = cpos dc.acquisitions[0] = acq dc.experiment_type = queue_model_enumerables.EXPERIMENT_TYPE.EDNA_REF char = queue_model_objects.Characterisation(dc, char_params) char.set_name(dc.acquisitions[0].\ path_template.get_prefix()) char.set_number(dc.acquisitions[0].\ path_template.run_number) tasks.append(char) self._path_template.run_number += 1 return tasks