Python Read.parse_sam_bitwise_flag Examples

Example #1

File: test_Read.py Project: HollickLab/metagene_analysis

    for test in bad_cigar_string:
        yield (check_catch_bad_cigar_input, test, bad_cigar_string[test])


@raises(MetageneError)
def check_catch_bad_cigar_input(test, (values, expected)):
    print Read.build_positions(*values)


def test_parse_sam_bitwise_flag():
    for test in bitwise_flag:
        yield (check_parse_sam_bitwise_flag, test, bitwise_flag[test])


def check_parse_sam_bitwise_flag(test, (values, expected)):
    bitwise_result = Read.parse_sam_bitwise_flag(*values)
    test_description = "\nTest:    \t{}\n".format(test)
    test_description += "Expected:\t{}\n".format(expected)
    test_description += "Position:\t{}\n".format(bitwise_result)
    assert bitwise_result == expected, "{}Error:   \tDid not parse bitwise flag as expected.".format(test_description)


def test_catch_bad_bitwise_input():
    for test in bad_bitwise_flag:
        yield (check_catch_bad_bitwise_input, test, bad_bitwise_flag[test])


@raises(MetageneError)
def check_catch_bad_bitwise_input(test, (values, expected)):
    print Read.parse_sam_bitwise_flag(*values)

Example #2

File: test_Read.py Project: Joy-El/metagene_analysis

    for test in bad_cigar_string:
        yield (check_catch_bad_cigar_input, test, bad_cigar_string[test])


@raises(MetageneError)
def check_catch_bad_cigar_input(test, (values, expected)):
    print Read.build_positions(*values)


def test_parse_sam_bitwise_flag():
    for test in bitwise_flag:
        yield (check_parse_sam_bitwise_flag, test, bitwise_flag[test])


def check_parse_sam_bitwise_flag(test, (values, expected)):
    bitwise_result = Read.parse_sam_bitwise_flag(*values)
    test_description = "\nTest:    \t{}\n".format(test)
    test_description += "Expected:\t{}\n".format(expected)
    test_description += "Position:\t{}\n".format(bitwise_result)
    assert bitwise_result == expected, "{}Error:   \tDid not parse bitwise flag as expected.".format(
        test_description)


def test_catch_bad_bitwise_input():
    for test in bad_bitwise_flag:
        yield (check_catch_bad_bitwise_input, test, bad_bitwise_flag[test])


@raises(MetageneError)
def check_catch_bad_bitwise_input(test, (values, expected)):
    print Read.parse_sam_bitwise_flag(*values)