def __init__(self):
QtGui.QMainWindow.__init__(self)
self.ui = Ui_SNPConvert()
self.ui.setupUi(self)
###############################################
###### TAB1 - Illumina MATRIX Format ##########
###############################################
#Setting log screen as readonly
self.ui.Log_wdg_tab1.setReadOnly(True)
#Setting action of buttons opening to Open file
self.inputFinRepFile_tab1 = ''
self.inputSnpMapFile_tab1 = ''
self.ui.FinRep_tab1.clicked.connect(self.FinRep_open_tab1)
self.ui.SnpMap_tab1.clicked.connect(self.SnpMap_open_tab1)
#Setting linedit read (breed code)
self.BrdCode_tab1 = 'UNKN_BRD'
self.ui.BrdCode_tab1.setPlaceholderText(
self.BrdCode_tab1) #default (example) value
self.ui.BrdCode_tab1.cursorPositionChanged.connect(
self.BrdCodeChange_tab1)
#Setting linedit read (output name)
self.OutName_tab1 = 'Output_name'
self.ui.OutName_tab1.setPlaceholderText(
self.OutName_tab1) #default (example) name
self.ui.OutName_tab1.cursorPositionChanged.connect(
self.OutNameChange_tab1)
#Setting action of buttons RUN
self.ui.ConvertFile_tab1.clicked.connect(self.ConvertFile_run_tab1)
###############################################
###### TAB2 - Illumina ROW Format ##########
###############################################
#Setting log screen as readonly
self.ui.Log_wdg_tab2.setReadOnly(True)
#Setting action of buttons opening to Open file
self.inputFinRepFile_tab2 = ''
self.inputSnpMap_tab2 = ''
self.ui.FinRep_tab2.clicked.connect(self.FinRep_open_tab2)
self.ui.SnpMap_tab2.clicked.connect(self.SnpMap_open_tab2)
#Setting the combo box
self.Chosen_allele = 'Forward'
self.items = ('Forward', 'Top', 'AB')
self.ui.AlleleCod_box_tab2.addItems(self.items)
self.ui.AlleleCod_box_tab2.currentIndexChanged.connect(
self.OutAlleleCoding_tab2)
#Setting linedit read (breed code)
self.BrdCode_tab2 = 'UNKN_BRD'
self.ui.BrdCode_tab2.setPlaceholderText(
self.BrdCode_tab2) #default (example) value
self.ui.BrdCode_tab2.cursorPositionChanged.connect(
self.BrdCodeChange_tab2)
#Setting linedit read (output name)
self.OutName_tab2 = 'Output_name'
self.ui.OutName_tab2.setPlaceholderText(
self.OutName_tab2) #default (example) name
self.ui.OutName_tab2.cursorPositionChanged.connect(
self.OutNameChange_tab2)
#Setting action of buttons RUN
self.ui.ConvertFile_tab2.clicked.connect(self.ConvertFile_run_tab2)
################################
###### TAB3 - iConvert #########
################################
#Setting log screen as readonly
self.ui.Log_wdg_tab3.setReadOnly(True)
#Setting action of buttons opening to Open file
self.inputPedFile_tab3 = ''
self.inputMapFile_tab3 = ''
self.inputSnpChimpFile_tab3 = ''
self.ui.PedFile_tab3.clicked.connect(self.PedFile_open_tab3)
self.ui.MapFile_tab3.clicked.connect(self.MapFile_open_tab3)
self.ui.SnpChimp_tab3.clicked.connect(self.SnpChimp_open_tab3)
#Setting the combo box
self.items1 = [
'ILMN_Forward', 'ILMN_Top', 'ILMN_AB', 'AFFY_Forward', 'AFFY_AB',
'NO_allele_conv'
]
self.INChosen_allele = 'ILMN_Forward'
self.ui.AlleleCodIn_box_tab3.addItems(self.items1)
self.ui.AlleleCodIn_box_tab3.currentIndexChanged.connect(
self.InAlleleCoding_tab3)
self.items2 = [
'ILMN_Top', 'ILMN_Forward', 'ILMN_AB', 'AFFY_Forward', 'AFFY_AB',
'NO_allele_conv'
]
self.OUTChosen_allele = 'ILMN_Top'
self.ui.AlleleCodOut_box_tab3.addItems(self.items2)
self.ui.AlleleCodOut_box_tab3.currentIndexChanged.connect(
self.OutAlleleCoding_tab3)
#Setting radio buttons
self.UpdateMap = True
self.ui.YesRadioButton_tab3.clicked.connect(self.YesRadio_clicked)
self.ui.NoRadioButton_tab3.clicked.connect(self.NoRadio_clicked)
#Setting linedit read (output name)
self.OutName_tab3 = 'Output_name'
self.ui.OutName_tab3.setPlaceholderText(
self.OutName_tab3) #default (example) name
self.ui.OutName_tab3.cursorPositionChanged.connect(
self.OutNameChange_tab3)
#Setting action of buttons RUN
self.ui.ConvertFile_tab3.clicked.connect(self.ConvertFile_run_tab3)
