def getAccessionNumber(input_type, input_value):
""" Function to obtain accession number from the database
input: database query with Arg4, type and value from the config file
output: accession numberfrom database """
accession_number = db_query(cg.dbArg1, input_type, input_value)
return accession_number
def getDNA(input_type, input_value):
""" Function to obtain DNA Sequence from the database
input: database query type and value from the config file
output:dna_sequence from database"""
dna_sequence = db_query(cg.dbArg7, input_type, input_value)
return dna_sequence
def getLocationCDS(input_type, input_value):
""" Function to obtain CDS Location from the database
input: database query with Arg4, type and value from the config file
output: CDS Location from database """
cds_location = db_query(cg.dbArg6, input_value, output_value)
return cds_location
def getAminoAcidSequence(input_type, input_value):
""" Function to obtain Amino Acid Sequence from the database
input: database query Arg5, type, and value from the config file
output:Amino Acid Sequence from database"""
amino_acid_sequence = db_query(cg.dbArg5, input_type, input_value)
return amino_acid_sequence
def getGeneID(input_type, input_value):
""" Function to obtain protein GeneID from the database
input: database query Arg3, type, and value from the config file
output:Gene ID from database"""
gene_id = db_query(cg.dbArg3, input_type, input_value)
if gene_id == '':
return 'Gene ID missing'
else:
return gene_id
def getChrLocation(input_type, input_value):
""" Function to obtain Chromosome Location from the database
input: database query Arg2, type, and value from the config file
output:Chromosome Location from database"""
chr_location = db_query(cg.dbArg2, input_type, input_value)
if chr_location == '':
return 'Chromosomal Location Missing'
else:
return chr_location
def getProductName(input_type, input_value):
""" Function to obtain protein product name from the database
input: database query type and value from the config file
output:protein product name from database """
product_name = db_query(cg.dbArg4, input_type, input_value)
if product_name == '':
return 'Product Name Missing'
else:
return product_name
def getProductName(input_type, input_value):
product_name = db_query(dbArg4, input_type, input_value)
if product_name == '':
return 'Product Name Missing'
else:
return product_name
def getAccessionNumber(input_type, input_value):
accession_number = db_query(dbArg1, input_type, input_value)
return accession_number
def getChrLocation(input_type, input_value):
chr_location = db_query(dbArg2, input_type, input_value)
if chr_location == '':
return 'Chromosomal Location Missing'
else:
return chr_location
def getLocationCDS(input_type, input_value):
cds_location = db_query(dbArg6, input_value, output_value)
return cds_location
def getAminoAcidSequence(input_type, input_value):
amino_acid_sequence = db_query(dbArg5, input_type, input_value)
return amino_acid_sequence
def getDNA(input_type, input_value):
dna_sequence = db_query(dbArg7, input_type, input_value)
return dna_sequence
def getGeneID(input_type, input_value):
gene_id = db_query(dbArg3, input_type, input_value)
if gene_id == '':
return 'Gene ID missing'
else:
return gene_id
