def protocolPage(protocol_id):
protocol = getProtocol(protocol_id)
if not os.path.exists('protocol_files/{}.py'.format(protocol_id)):
getDownload(protocol_id)
labware = findLabware(protocol_id)
pipettes = findPipettes(protocol_id)
metadata = findMetadata(protocol_id)
modFields = []
wellmap = 'false'
for data in metadata:
if data['field'].lower() == 'modify':
if data['value'].lower() == 'true':
modFields = findModFields(protocol_id)
if data['field'].lower() == 'well-map':
if data['value'].lower() == 'true':
wellmap = 'true'
return render_template('protocol.html',
id=protocol_id,
name=protocol['name'],
modifiedTime=protocol['modifiedTime'],
pipettes=pipettes,
labware=labware,
metadata=metadata,
modFields=modFields,
wellmap=wellmap)
def HistoryConfirm(filename):
folder = "History/{}".format(filename)
labware = findLabware(folder, filename)
pipettes = findPipettes(folder, filename)
metadata = findMetadata(folder, filename)
modFields = findModFields(folder, filename)
description = getHistoryDescription(folder)
return render_template('confirm.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList = metadata, modFieldList=modFields, history=True, description=description)
def Protocol(filename):
folder = "ProtocolFiles"
labware = findLabware(folder, filename)
pipettes = findPipettes(folder, filename)
metadata = findMetadata(folder, filename)
modFields = findModFields(folder, filename)
makeTempFile(filename)
wellMap = wellMapEnabled(metadata)
return render_template('protocol.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList=metadata, modFieldList=modFields, wellMapEnabled=wellMap)
def ProtocolHistory(filename):
folder = "History/{}".format(filename)
labware = findLabware(folder, filename)
pipettes = findPipettes(folder, filename)
metadata = findMetadata(folder, filename)
modFields = findModFields(folder, filename)
wellmap = findWellmap(folder, filename)
simulationLog = simulateScript(folder, filename)
description = getHistoryDescription(folder)
return render_template('confirm.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList = metadata, modFieldList=modFields, history=True, wellmap=wellmap, simulationLog=simulationLog[1], error=simulationLog[0], description=description)
def Confirm(filename):
temp_filename = 'temp_' + filename
folder = "TemporaryFiles"
labware = findLabware(folder, temp_filename)
pipettes = findPipettes(folder, temp_filename)
metadata = findMetadata(folder, temp_filename)
modFields = findModFields(folder, temp_filename)
wellmap = findWellmap(folder, temp_filename)
simulationLog = simulateScript(folder, temp_filename)
return render_template('confirm.html', protocol=filename, labwareList=labware, pipetteList=pipettes, metadataList = metadata, modFieldList=modFields, history=False, wellmap=wellmap, simulationLog=simulationLog[1], error=simulationLog[0])
def editLabwarePage(protocol_id):
labwareForm = LabwareForm()
labwareResults = None
labware = findLabware(protocol_id)
if labwareForm.validate_on_submit():
labwareResultsSource = labwareForm.source.data
labwareResultsDestination = labwareForm.destination.data
editLabware(labwareResultsSource, labwareResultsDestination,
protocol_id)
return redirect(url_for('protocolPage', protocol_id=protocol_id))
print('submission not validated')
print(labwareForm.errors)
protocol = getProtocol(protocol_id)
return render_template('editLabware.html',
id=protocol_id,
name=protocol['name'],
form=labwareForm,
labware=labware)