def comp(argument, cs):
print_colored("COMP", "yellow")
argument = Seq(argument.replace('"', ""))
comp_seq = str(Seq.seq_complement(argument))
response = f"""Initial sequence: {argument}
Complement sequence: {comp_seq}"""
cs.send(response.encode())
print(response)
def rev(argument, cs):
print_colored("REV", "yellow")
argument = Seq(argument.replace('"', ""))
rev_seq = str(Seq.seq_reverse(argument))
response = f"""Initial sequence: {argument}
Reverse sequence: {rev_seq}"""
cs.send(response.encode())
print(response)
def info(argument, cs):
print_colored("INFO", "yellow")
list_bases = ["A", "C", "T", "G"]
argument = Seq(argument.replace('"', ""))
t_l = Seq.len(argument)
count_list = []
percentage_list = []
for base in list_bases:
count_list.append(argument.count_base_1(base))
for i in range(0, len(count_list)):
percentage_list.append(count_list[i] * 100 / t_l)
response = f"""Sequence: {argument}
Total length: {t_l}
A: {count_list[0]} ({percentage_list[0]}%)
C: {count_list[1]} ({percentage_list[0]}%)
G: {count_list[2]} ({percentage_list[0]}%)
T: {count_list[3]} ({percentage_list[0]}%)"""
cs.send(response.encode())
print(response)