def load_network(net_file,name): server = connect_server("http://localhost:9000") cytoscape = server.Cytoscape title = name if cytoscape.hasCurrentNetwork() == True: old_id = cytoscape.getNetworkID() cytoscape.destroyNetwork(old_id) cytoscape.createNetwork(title) else: cytoscape.createNetwork(title) network = Cyto() network.load(net_file) return network, cytoscape
def load_network(file,name): network = Cyto() network.load(file) network.name = name return network
def load_network(file, name): network = Cyto() network.load(file) network.name = name return network
elif connections == 2: cytoscape.setNodeFillColor(id, [node], 0, 255, 0) elif connections > 2: cytoscape.setNodeFillColor(id, [node], 0, 0, 255) server = connect_server("http://localhost:9000") cytoscape = server.Cytoscape title = "bHLH" if cytoscape.hasCurrentNetwork() == True: old_id = cytoscape.getNetworkID() cytoscape.destroyNetwork(old_id) cytoscape.createNetwork(title) else: cytoscape.createNetwork(title) network = Cyto() network.load(options.net_in) nodes = network.nodes.keys() from_nodes, to_nodes = network.edges() cytoscape.createNodes(nodes) cytoscape.createEdges(from_nodes, to_nodes) #cytoscape.performDefaultLayout() cytoscape.performLayout("force-directed") id = cytoscape.getNetworkID() scale_nodesize(range(1, 50, 2), id) set_color(id) #cytoscape.setLayoutPropertyValues("kamada-kawai-noweight")
elif connections == 2: cytoscape.setNodeFillColor(id,[node], 0,255,0) elif connections > 2: cytoscape.setNodeFillColor(id,[node],0,0,255) server = connect_server("http://localhost:9000") cytoscape = server.Cytoscape title = "bHLH" if cytoscape.hasCurrentNetwork() == True: old_id = cytoscape.getNetworkID() cytoscape.destroyNetwork(old_id) cytoscape.createNetwork(title) else: cytoscape.createNetwork(title) network = Cyto() network.load(options.net_in) nodes = network.nodes.keys() from_nodes, to_nodes = network.edges() cytoscape.createNodes(nodes) cytoscape.createEdges(from_nodes, to_nodes) #cytoscape.performDefaultLayout() cytoscape.performLayout("force-directed") id = cytoscape.getNetworkID() scale_nodesize(range(1,50,2),id) set_color(id) #cytoscape.setLayoutPropertyValues("kamada-kawai-noweight")