def translate_image(self, image_name, x_units, y_units):
input_image = cv2.imread(image_name, 1)
file_name = "ReferenceImages/translation.jpg"
translation = Translation()
translated_image = translation.translate(input_image, y_units, x_units)
cv2.imwrite(file_name, translated_image)
rows, cols = translated_image.shape[0], translated_image.shape[1]
return file_name, rows, cols
#filename="/home/bmajoros/1000G/assembly/BRCA1-NA19782.fasta";
filename="/Users/bmajoros/python/test/data/subset.fasta"
print(FastaReader.getSize(filename))
[defline,seq]=FastaReader.firstSequence(filename)
print(len(seq))
#filename="/home/bmajoros/1000G/assembly/test.fasta"
filename="/Users/bmajoros/python/test/data/subset.fasta"
hash=FastaReader.readAllAndKeepDefs(filename)
for key in hash.keys():
[defline,seq]=hash[key]
print(defline)
[id,attrs]=FastaReader.parseDefline(defline)
print("id="+id)
for key,value in attrs.items():
print(key+"="+value)
writer=FastaWriter()
writer.writeFasta(">ABCD","ATCGATCGTAGCTAGTCTGCGCGTATCGTCAGTCTCTATCGATCGTACTGCGATCTAGCTAGCTGATCGTAGCTTCTATGACTGCTAGTCATCTAGCTAGCTGATCGTAGCTGCGCGCGATATATTGCATCTATGCTATCATTGCATGCTAGCTCTAGCTAGTCGATGCTATCTTAGCTAC","test1.fasta")
writer.appendToFasta(">XYZ","GATTACA","test1.fasta")
print(Translation.translate(seq))
print("forward:",seq)
print("revcomp: ",Translation.reverseComplement(seq))
