Python parse_id Examples

Example #1

File: test_XMFA2Coords.py Project: hobrien/Python

def test_parse_id():
  (start, strand, name) = parse_id('1:1-20 + /Users/HeathOBrien/Bioinformatics/Psuedomonas/AE016853.gbk')
  assert start == 1
  assert strand == '+'
  assert name == '/Users/HeathOBrien/Bioinformatics/Psuedomonas/AE016853.gbk'
  (start, strand, name) = parse_id('1:1-20 - /Users/HeathOBrien/Bioinformatics/Psuedomonas/AE016853.gbk')
  assert start == 20
  assert strand == '-'

Example #2

File: test_XMFA2Coords.py Project: hobrien/Python

def test_parse_id3():
  """test if error handling works correctly when strand info not formatted correctly"""
  (start, strand, name) = parse_id('1:1-20 1 /Users/HeathOBrien/Bioinformatics/Psuedomonas/AE016853.gbk')