def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginWaitMultiFile.process global time-out is set to: %s (default value)" % (self.getTimeOut()))
self.setTimeInit()
################################################################################
# Initialize the accumulator with the query
################################################################################
xsdiAccumulator = XSDataInputAccumulator()
xsdQuery = XSDataQuery()
xsdQuery.setRemoveItems(XSDataBoolean(1))
xsdQuery.setItem(self.listXsdStrings)
xsdiAccumulator.setQuery([xsdQuery])
edPluginAccumulator = self.loadPlugin(self.__strControlledPluginAccumulator)
edPluginAccumulator.setDataInput(xsdiAccumulator)
edPluginAccumulator.connectSUCCESS(self.doSuccessAccumulator)
edPluginAccumulator.connectFAILURE(self.doFailureAccumulator)
edPluginAccumulator.execute()
for oneXSDImage in self.listXsdFiles:
xsdiWaitFile = XSDataInputWaitFile()
xsdiWaitFile.setExpectedFile(oneXSDImage)
xsdiWaitFile.setExpectedSize(self.dataInput.expectedSize)
xsdiWaitFile.setTimeOut(self.dataInput.timeOut)
edPluginWaitFile = self.loadPlugin(self.__strControlledPluginWaitFile)
edPluginWaitFile.setDataInput(xsdiWaitFile)
edPluginWaitFile.connectSUCCESS(self.doSuccessWaitFile)
edPluginWaitFile.connectFAILURE(self.doFailureWaitFile)
edPluginWaitFile.execute()
def testFlush(self):
xsDataInput = XSDataInputAccumulator()
xsDataInput.setFlush(XSDataBoolean(True))
edPluginAccumulator = self.createPlugin()
edPluginAccumulator.emptyItems()
edPluginAccumulator.emptyQueries()
edPluginAccumulator.addItem("data1")
edPluginAccumulator.addItem("data2")
edPluginAccumulator.addItem("data3")
edPluginAccumulator.addItem("data4")
edPluginAccumulator.addItem("data3")
EDAssert.equal(edPluginAccumulator.getItems(),
["data1", "data2", "data3", "data4", "data3"],
"Artificial item feed")
edPluginAccumulator.setDataInput(xsDataInput)
edPluginAccumulator.checkParameters()
edPluginAccumulator.preProcess()
edPluginAccumulator.process()
edPluginAccumulator.postProcess()
EDAssert.equal(edPluginAccumulator.getItems(), [],
"Empty item list after Flush")
if "query" in edPluginAccumulator.getDataOutput().__dict__:
# print "Old datamodel"
myQuery = edPluginAccumulator.getDataOutput(
).__dict__["query"][0].__dict__['item']
else:
myQuery = edPluginAccumulator.getDataOutput(
).__dict__["_XSDataResultAccumulator__query"][0].__dict__[
'_XSDataQuery__item']
EDAssert.equal(len(myQuery), 5, "We expect 5 items as output")
def doSuccessWaitFile(self, _edPlugin=None):
with self.locked():
self.DEBUG("EDPluginWaitMultiFile.doSuccessWaitFile")
self.retrieveSuccessMessages(
_edPlugin, "EDPluginWaitMultiFile.doSuccessWaitFile")
xsdFile = _edPlugin.dataOutput.actualFile
if _edPlugin.dataOutput.getActualSize() is None:
self.WARNING("Wait for file %s finished in timeout!" %
_edPlugin.dataInput.expectedFile.path.value)
self.DEBUG("Please check why XSDataResultWaitFile is:\n%s" %
_edPlugin.dataOutput.marshal())
self.DEBUG(
"This usually happens when EDPluginWaitFile has no configuration file or EDNA_SITE is undefined"
)
self.setFailure()
else:
self.__filesize.append(_edPlugin.dataOutput.actualSize.value)
if _edPlugin.dataOutput.timedOut.value:
self.__bAnyTimeOut = True
if xsdFile is not None:
xsdiAccumulator = XSDataInputAccumulator()
xsdiAccumulator.setItem([xsdFile.path
]) #Mandatory to be a list !!!
edPluginAccumulator = self.loadPlugin(
self.__strControlledPluginAccumulator)
edPluginAccumulator.setDataInput(xsdiAccumulator)
edPluginAccumulator.connectSUCCESS(
self.doSuccessAccumulator)
edPluginAccumulator.connectFAILURE(
self.doFailureAccumulator)
edPluginAccumulator.execute()
def preProcess(self):
"""
PreProcess of the execution test: download an EDF file from http://www.edna-site.org
"""
EDTestCasePluginExecuteControlMedianFilterImagev1_0.preProcess(self)
self.loadTestImage([ "noise2.edf", "noise3.edf", "noise4.edf", "noise5.edf", "noise6.edf"])
acc = EDFactoryPluginStatic.loadPlugin("EDPluginAccumulatorv1_0")
xsdIn = XSDataInputAccumulator()
xsdIn.setItem([XSDataString(os.path.join(self.getTestsDataImagesHome(), "noise%i.edf" % i)) for i in [2, 3, 5, 6]])
acc.setDataInput(xsdIn)
acc.executeSynchronous()
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlMedianFilterImagev1_0.preProcess")
# Load the execution plugin
self.__edPluginExecAccumulator = self.loadPlugin(self.__strControlledPluginAccumulator)
self.image = os.path.abspath(self.getDataInput().getInputImage().getPath().getValue())
self.width = self.getDataInput().getFilterWidth().getValue()
if self.getDataInput().getMedianFilteredImage() is not None:
self.outputImage = os.path.abspath(self.getDataInput().getMedianFilteredImage().getPath().getValue())
xsdAcc = XSDataInputAccumulator()
xsdAcc.setQuery([self.prepareQuery(self.image, self.width)])
xsdAcc.setItem([XSDataString(self.image)])
self.__edPluginExecAccumulator.setDataInput(xsdAcc)
def preProcess(self):
"""
PreProcess of the execution test: download an EDF file from http://www.edna-site.org
"""
EDTestCasePluginExecuteControlMedianFilterImagev1_0.preProcess(self)
self.loadTestImage([
"noise2.edf", "noise3.edf", "noise4.edf", "noise5.edf",
"noise6.edf"
])
acc = EDFactoryPluginStatic.loadPlugin("EDPluginAccumulatorv1_0")
xsdIn = XSDataInputAccumulator()
xsdIn.setItem([
XSDataString(
os.path.join(self.getTestsDataImagesHome(), "noise%i.edf" % i))
for i in [2, 3, 5, 6]
])
acc.setDataInput(xsdIn)
acc.executeSynchronous()
def doSuccessWaitFile(self, _edPlugin=None):
with self.locked():
self.DEBUG("EDPluginWaitMultiFile.doSuccessWaitFile")
self.retrieveSuccessMessages(_edPlugin, "EDPluginWaitMultiFile.doSuccessWaitFile")
xsdFile = _edPlugin.dataOutput.actualFile
if _edPlugin.dataOutput.getActualSize() is None:
self.WARNING("Wait for file %s finished in timeout!" % _edPlugin.dataInput.expectedFile.path.value)
self.DEBUG("Please check why XSDataResultWaitFile is:\n%s" % _edPlugin.dataOutput.marshal())
self.DEBUG("This usually happens when EDPluginWaitFile has no configuration file or EDNA_SITE is undefined")
self.setFailure()
else:
self.__filesize.append(_edPlugin.dataOutput.actualSize.value)
if _edPlugin.dataOutput.timedOut.value:
self.__bAnyTimeOut = True
if xsdFile is not None:
xsdiAccumulator = XSDataInputAccumulator()
xsdiAccumulator.setItem([xsdFile.path]) #Mandatory to be a list !!!
edPluginAccumulator = self.loadPlugin(self.__strControlledPluginAccumulator)
edPluginAccumulator.setDataInput(xsdiAccumulator)
edPluginAccumulator.connectSUCCESS(self.doSuccessAccumulator)
edPluginAccumulator.connectFAILURE(self.doFailureAccumulator)
edPluginAccumulator.execute()
def testFlush(self):
xsDataInput = XSDataInputAccumulator()
xsDataInput.setFlush(XSDataBoolean(True))
edPluginAccumulator = self.createPlugin()
edPluginAccumulator.emptyItems()
edPluginAccumulator.emptyQueries()
edPluginAccumulator.addItem("data1")
edPluginAccumulator.addItem("data2")
edPluginAccumulator.addItem("data3")
edPluginAccumulator.addItem("data4")
edPluginAccumulator.addItem("data3")
EDAssert.equal(edPluginAccumulator.getItems(), ["data1", "data2", "data3", "data4", "data3"], "Artificial item feed")
edPluginAccumulator.setDataInput(xsDataInput)
edPluginAccumulator.checkParameters()
edPluginAccumulator.preProcess()
edPluginAccumulator.process()
edPluginAccumulator.postProcess()
EDAssert.equal(edPluginAccumulator.getItems(), [], "Empty item list after Flush")
if "query" in edPluginAccumulator.getDataOutput().__dict__:
# print "Old datamodel"
myQuery = edPluginAccumulator.getDataOutput().__dict__["query"][0].__dict__['item']
else:
myQuery = edPluginAccumulator.getDataOutput().__dict__["_XSDataResultAccumulator__query"][0].__dict__['_XSDataQuery__item']
EDAssert.equal(len(myQuery), 5, "We expect 5 items as output")
def preProcess(self, _edObject=None):
EDPluginControl.preProcess(self)
self.DEBUG("EDPluginControlMedianFilterImagev1_0.preProcess")
# Load the execution plugin
self.__edPluginExecAccumulator = self.loadPlugin(
self.__strControlledPluginAccumulator)
self.image = os.path.abspath(
self.getDataInput().getInputImage().getPath().getValue())
self.width = self.getDataInput().getFilterWidth().getValue()
if self.getDataInput().getMedianFilteredImage() is not None:
self.outputImage = os.path.abspath(self.getDataInput(
).getMedianFilteredImage().getPath().getValue())
xsdAcc = XSDataInputAccumulator()
xsdAcc.setQuery([self.prepareQuery(self.image, self.width)])
xsdAcc.setItem([XSDataString(self.image)])
self.__edPluginExecAccumulator.setDataInput(xsdAcc)
def doSuccessExecMeasureOffset(self, _edPlugin=None):
with self.semMeasure:
self.DEBUG(
"EDPluginControlAlignStackv1_0.doSuccessExecMeasureOffset")
self.retrieveSuccessMessages(
_edPlugin,
"EDPluginControlAlignStackv1_0.doSuccessExecMeasureOffset")
listIndex = [i.getValue() for i in _edPlugin.dataInput.index]
listIndex.sort()
dataOutput = _edPlugin.dataOutput
if self.bAlwaysMOvsRef:
if min(listIndex) < EDPluginControlAlignStackv1_0.__iRefFrame:
iToShift, iRef = tuple(listIndex)
EDPluginControlAlignStackv1_0.__dictAbsShift[
iToShift] = tuple(
[-i.getValue() for i in dataOutput.getOffset()])
else:
iRef, iToShift = tuple(listIndex)
EDPluginControlAlignStackv1_0.__dictAbsShift[
iToShift] = tuple(
[i.getValue() for i in dataOutput.getOffset()])
self.screen(
"Frame number %i has absolute offset of %.3f,%.3f" %
(iToShift,
EDPluginControlAlignStackv1_0.__dictAbsShift[iToShift][0],
EDPluginControlAlignStackv1_0.__dictAbsShift[iToShift][1])
)
edPluginExecShift = self.loadPlugin(
self.__strControlledPluginShift)
xsdata = XSDataInputShiftImage(
index=XSDataInteger(iToShift),
offset=[
XSDataDouble(i) for i in
EDPluginControlAlignStackv1_0.__dictAbsShift[iToShift]
],
inputImage=self.getFrameRef(iToShift),
outputImage=XSDataImageExt(
shared=XSDataString("Shifted-%06i" % iToShift)))
edPluginExecShift.setDataInput(xsdata)
edPluginExecShift.connectSUCCESS(self.doSuccessExecShiftImage)
edPluginExecShift.connectFAILURE(self.doFailureExecShiftImage)
self.queue.put(edPluginExecShift)
else:
if min(listIndex) < EDPluginControlAlignStackv1_0.__iRefFrame:
iToShift, iRef = tuple(listIndex)
EDPluginControlAlignStackv1_0.__dictRelShift[
iToShift] = tuple(
[-i.value for i in dataOutput.offset])
else:
iRef, iToShift = tuple(listIndex)
EDPluginControlAlignStackv1_0.__dictRelShift[
iToShift] = tuple([i.value for i in dataOutput.offset])
self.screen(
"Frame number %i has relative offset of %.3f,%.3f" %
(iToShift,
EDPluginControlAlignStackv1_0.__dictRelShift[iToShift][0],
EDPluginControlAlignStackv1_0.__dictRelShift[iToShift][1])
)
xsdata = XSDataInputAccumulator(
item=[XSDataString("shift %04i" % iToShift)])
edPluginExecAccumulator = self.loadPlugin(
self.__strControlledPluginAccumulator)
edPluginExecAccumulator.setDataInput(xsdata)
edPluginExecAccumulator.connectSUCCESS(
self.doSuccessExecAccumultor)
edPluginExecAccumulator.connectFAILURE(
self.doFailureExecAccumulator)
self.queue.put(edPluginExecAccumulator)
def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginControlAlignStackv1_0.process")
for iFrame in self.iFrames:
edPluginExecAccumulator = self.loadPlugin(
self.__strControlledPluginAccumulator)
queryRaw = XSDataQuery()
queryShift = XSDataQuery()
queryRaw.setRemoveItems(XSDataBoolean(False))
queryShift.setRemoveItems(XSDataBoolean(False))
xsdataAcc = XSDataInputAccumulator()
if (EDPluginControlAlignStackv1_0.__iRefFrame
== iFrame) or (self.bDoAlign == False):
EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame] = (0.0,
0.0)
EDPluginControlAlignStackv1_0.__dictRelShift[iFrame] = (0.0,
0.0)
self.hdf5_offset(index=iFrame, offset=[0.0, 0.0])
edPluginExecShift = self.loadPlugin(
self.__strControlledPluginShift)
xsdata = XSDataInputShiftImage(
index=XSDataInteger(iFrame),
offset=[
XSDataDouble(i) for i in
EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame]
],
inputImage=self.getFrameRef(iFrame),
outputImage=XSDataImageExt(
shared=XSDataString("Shifted-%06i" % iFrame)))
edPluginExecShift.setDataInput(xsdata)
edPluginExecShift.connectSUCCESS(self.doSuccessExecShiftImage)
edPluginExecShift.connectFAILURE(self.doFailureExecShiftImage)
self.queue.put(edPluginExecShift)
if (self.bDoAlign == False):
self.executeControlledPlugins()
return
elif EDPluginControlAlignStackv1_0.__iRefFrame < iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([
XSDataString(
"raw %04i" %
(EDPluginControlAlignStackv1_0.__iRefFrame)),
XSDataString("raw %04i" % iFrame)
])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([
XSDataString("raw %04i" % (iFrame - 1)),
XSDataString("raw %04i" % iFrame)
])
queryShift.setItem([
XSDataString("shift %04i" % i) for i in range(
EDPluginControlAlignStackv1_0.__iRefFrame +
1, iFrame + 1)
])
xsdataAcc.setQuery([queryRaw, queryShift])
elif EDPluginControlAlignStackv1_0.__iRefFrame > iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([
XSDataString("raw %04i" % iFrame),
XSDataString(
"raw %04i" %
(EDPluginControlAlignStackv1_0.__iRefFrame))
])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([
XSDataString("raw %04i" % (iFrame + 1)),
XSDataString("raw %04i" % iFrame)
])
queryShift.setItem([
XSDataString("shift %04i" % i) for i in range(
EDPluginControlAlignStackv1_0.__iRefFrame -
1, iFrame - 1, -1)
])
xsdataAcc.setQuery([queryRaw, queryShift])
if (EDPluginControlAlignStackv1_0.__iRefFrame == iFrame):
self.saveReferenceFrame(iFrame)
xsdataAcc.setItem([XSDataString("raw %04i" % iFrame)])
edPluginExecAccumulator.setDataInput(xsdataAcc)
edPluginExecAccumulator.connectSUCCESS(
self.doSuccessExecAccumultor)
edPluginExecAccumulator.connectFAILURE(
self.doFailureExecAccumulator)
self.queue.put(edPluginExecAccumulator)
self.executeControlledPlugins()
def process(self, _edObject=None):
EDPluginControl.process(self)
self.DEBUG("EDPluginControlAlignStackv1_0.process")
for iFrame in self.iFrames:
edPluginExecAccumulator = self.loadPlugin(self.__strControlledPluginAccumulator)
queryRaw = XSDataQuery()
queryShift = XSDataQuery()
queryRaw.setRemoveItems(XSDataBoolean(False))
queryShift.setRemoveItems(XSDataBoolean(False))
xsdataAcc = XSDataInputAccumulator()
if (EDPluginControlAlignStackv1_0.__iRefFrame == iFrame) or (self.bDoAlign == False) :
EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame] = (0.0, 0.0)
EDPluginControlAlignStackv1_0.__dictRelShift[iFrame] = (0.0, 0.0)
self.hdf5_offset(index=iFrame, offset=[0.0, 0.0])
edPluginExecShift = self.loadPlugin(self.__strControlledPluginShift)
xsdata = XSDataInputShiftImage(index=XSDataInteger(iFrame),
offset=[XSDataDouble(i) for i in EDPluginControlAlignStackv1_0.__dictAbsShift[iFrame]],
inputImage=self.getFrameRef(iFrame),
outputImage=XSDataImageExt(shared=XSDataString("Shifted-%06i" % iFrame)))
edPluginExecShift.setDataInput(xsdata)
edPluginExecShift.connectSUCCESS(self.doSuccessExecShiftImage)
edPluginExecShift.connectFAILURE(self.doFailureExecShiftImage)
self.queue.put(edPluginExecShift)
if (self.bDoAlign == False):
self.executeControlledPlugins()
return
elif EDPluginControlAlignStackv1_0.__iRefFrame < iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([XSDataString("raw %04i" % (EDPluginControlAlignStackv1_0.__iRefFrame)), XSDataString("raw %04i" % iFrame)])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([XSDataString("raw %04i" % (iFrame - 1)), XSDataString("raw %04i" % iFrame)])
queryShift.setItem([XSDataString("shift %04i" % i) for i in range(EDPluginControlAlignStackv1_0.__iRefFrame + 1, iFrame + 1)])
xsdataAcc.setQuery([queryRaw, queryShift])
elif EDPluginControlAlignStackv1_0.__iRefFrame > iFrame:
if self.bAlwaysMOvsRef:
queryRaw.setItem([ XSDataString("raw %04i" % iFrame), XSDataString("raw %04i" % (EDPluginControlAlignStackv1_0.__iRefFrame))])
xsdataAcc.setQuery([queryRaw])
else:
queryRaw.setItem([XSDataString("raw %04i" % (iFrame + 1)), XSDataString("raw %04i" % iFrame)])
queryShift.setItem([XSDataString("shift %04i" % i) for i in range(EDPluginControlAlignStackv1_0.__iRefFrame - 1, iFrame - 1, -1)])
xsdataAcc.setQuery([queryRaw, queryShift])
if (EDPluginControlAlignStackv1_0.__iRefFrame == iFrame):
self.saveReferenceFrame(iFrame)
xsdataAcc.setItem([XSDataString("raw %04i" % iFrame)])
edPluginExecAccumulator.setDataInput(xsdataAcc)
edPluginExecAccumulator.connectSUCCESS(self.doSuccessExecAccumultor)
edPluginExecAccumulator.connectFAILURE(self.doFailureExecAccumulator)
self.queue.put(edPluginExecAccumulator)
self.executeControlledPlugins()
def testCheckParameters(self):
xsDataInput = XSDataInputAccumulator()
edPluginAccumulator = self.createPlugin()
edPluginAccumulator.setDataInput(xsDataInput)
edPluginAccumulator.checkParameters()
